FFCP PHASE1:Hg19::chr3:149089491..149089519,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-168bp_to_AK023364_5end | |association_with_transcript=-168bp_to_AK023364_5end | ||
|cluster_id=chr3:149089491..149089519,- | |||
|coexpression_cluster_id=C2724 | |||
|description=CAGE_peak_1_at_AK023364_5end | |description=CAGE_peak_1_at_AK023364_5end | ||
|id=chr3:149089491..149089519,- | |id=chr3:149089491..149089519,- | ||
|ontology_enrichment_celltype=CL:0000222!1.65e-23!119;CL:0000213!6.44e-16!57;CL:0000215!6.44e-16!57;CL:0000066!4.87e-15!254;CL:0000220!4.13e-14!246;CL:0002321!1.30e-13!248;CL:0002078!3.14e-13!44;CL:0002139!8.19e-13!24;CL:0000076!4.53e-12!62;CL:0000115!2.38e-11!35;CL:0000071!4.99e-09!18;CL:0002546!4.99e-09!18;CL:0000359!5.48e-09!32;CL:0000192!7.12e-09!42;CL:0000514!7.12e-09!42;CL:0000187!1.26e-08!54;CL:0000183!2.39e-08!59;CL:0000680!2.55e-08!57;CL:0000056!2.55e-08!57;CL:0000355!2.55e-08!57 | |ontology_enrichment_celltype=CL:0000222!1.65e-23!119;CL:0000213!6.44e-16!57;CL:0000215!6.44e-16!57;CL:0000066!4.87e-15!254;CL:0000220!4.13e-14!246;CL:0002321!1.30e-13!248;CL:0002078!3.14e-13!44;CL:0002139!8.19e-13!24;CL:0000076!4.53e-12!62;CL:0000115!2.38e-11!35;CL:0000071!4.99e-09!18;CL:0002546!4.99e-09!18;CL:0000359!5.48e-09!32;CL:0000192!7.12e-09!42;CL:0000514!7.12e-09!42;CL:0000187!1.26e-08!54;CL:0000183!2.39e-08!59;CL:0000680!2.55e-08!57;CL:0000056!2.55e-08!57;CL:0000355!2.55e-08!57 | ||
|ontology_enrichment_celltype_v019=CL:0002139;3.04e-16;24!CL:0000115;5.49e-14;36!CL:0000213;6.94e-13;58!CL:0000215;6.94e-13;58!CL:0002078;2.11e-12;45!CL:0000071;1.29e-10;18!CL:0000077;3.91e-08;19!CL:0002138;1.42e-07;6!CL:1000413;4.22e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000213,2.08e-22,58;CL:0000215,2.08e-22,58;CL:0000222,6.14e-22,121;CL:0002078,5.85e-19,45;CL:0002139,6.04e-17,24;CL:0000115,2.03e-16,36;CL:0000066,3.96e-15,253;CL:0000071,2.92e-11,18;CL:0002546,2.92e-11,18;CL:0000076,2.13e-10,63;CL:0002321,3.32e-09,250;CL:0000077,1.00e-07,19;CL:0005020,1.45e-07,6;CL:0002138,1.45e-07,6;CL:0005022,1.45e-07,6;CL:1000413,2.24e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002546;1.29e-10;18!UBERON:0008947;1.08e-08;29!CL:0005022;1.42e-07;6!CL:0000222;2.23e-07;121 | |||
|ontology_enrichment_disease=DOID:305!6.31e-10!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.39e-10,106;DOID:0050687,3.11e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000477!9.74e-22!286;UBERON:0003914!1.14e-21!118;UBERON:0002049!2.22e-20!79;UBERON:0007798!2.22e-20!79;UBERON:0000055!2.62e-20!69;UBERON:0001981!7.93e-19!60;UBERON:0007500!7.93e-19!60;UBERON:0004537!7.93e-19!60;UBERON:0006965!7.93e-19!60;UBERON:0004872!6.93e-18!84;UBERON:0003104!1.02e-15!238;UBERON:0009142!1.02e-15!238;UBERON:0004111!1.38e-15!241;UBERON:0000490!3.20e-15!138;UBERON:0001009!3.46e-15!113;UBERON:0000119!4.12e-15!312;UBERON:0004535!7.29e-15!110;UBERON:0001637!1.20e-14!42;UBERON:0003509!1.20e-14!42;UBERON:0004572!1.20e-14!42;UBERON:0000483!1.34e-14!309;UBERON:0000481!4.87e-14!347;UBERON:0005256!1.25e-12!143;UBERON:0004573!6.34e-12!33;UBERON:0004571!6.34e-12!33;UBERON:0000025!6.38e-12!194;UBERON:0000467!6.82e-10!625;UBERON:0000480!9.84e-10!626;UBERON:0000487!1.15e-09!22;UBERON:0006914!1.25e-09!25;UBERON:0000926!1.30e-09!448;UBERON:0004120!1.30e-09!448;UBERON:0006603!1.30e-09!448;UBERON:0002100!1.62e-09!216;UBERON:0000468!3.93e-09!659;UBERON:0001986!4.99e-09!18;UBERON:0004638!4.99e-09!18;UBERON:0004852!4.99e-09!18;UBERON:0001737!2.26e-08!9;UBERON:0000947!6.63e-08!21;UBERON:0010191!6.63e-08!21;UBERON:0002050!2.11e-07!605;UBERON:0005423!2.11e-07!605;UBERON:0001134!2.44e-07!61;UBERON:0002036!2.44e-07!61;UBERON:0003082!2.44e-07!61;UBERON:0002385!2.79e-07!63;UBERON:0001015!2.79e-07!63;UBERON:0000383!2.79e-07!63;UBERON:0000923!3.28e-07!604;UBERON:0005291!3.28e-07!604;UBERON:0006598!3.28e-07!604;UBERON:0002532!3.28e-07!604;UBERON:0000914!4.12e-07!83;UBERON:0002329!4.12e-07!83;UBERON:0003077!4.12e-07!83;UBERON:0003059!4.12e-07!83;UBERON:0007282!4.12e-07!83;UBERON:0009618!4.12e-07!83;UBERON:0007285!4.12e-07!83;UBERON:0004290!5.33e-07!70;UBERON:0000922!5.86e-07!612;UBERON:0000486!7.29e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;3.86e-12;42!UBERON:0003509;3.86e-12;42!UBERON:0004572;3.86e-12;42!UBERON:0000487;4.01e-12;22!UBERON:0001737;4.70e-12;9!UBERON:0001557;4.70e-12;9!UBERON:0000055;4.89e-12;65!UBERON:0003914;1.29e-11;74!UBERON:0006914;1.83e-11;25!UBERON:0007500;2.00e-11;56!UBERON:0001981;2.00e-11;56!UBERON:0004537;2.00e-11;56!UBERON:0004573;1.27e-10;33!UBERON:0004571;1.27e-10;33!UBERON:0004638;1.29e-10;18!UBERON:0001986;1.29e-10;18!UBERON:0004852;1.29e-10;18!UBERON:0002049;2.19e-09;75!UBERON:0007798;2.19e-09;75!UBERON:0000947;2.80e-07;21!UBERON:0010191;2.80e-07;21!UBERON:0003915;4.22e-07;9!UBERON:0004700;4.22e-07;9!UBERON:0001917;4.22e-07;9!UBERON:0000490;9.06e-07;33 | |||
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| ||
|short_description=p1@AK023364 | |short_description=p1@AK023364 | ||
}} | }} |
Latest revision as of 16:52, 29 July 2015
Short description: | p1@AK023364 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AK023364_5end |
Coexpression cluster: | C2724_Hep2_epitheloid_giant_Lymphatic_large_clear_Mesothelial |
Association with transcript: | -168bp_to_AK023364_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lining cell | 2.08e-22 | 58 |
barrier cell | 2.08e-22 | 58 |
mesodermal cell | 6.14e-22 | 121 |
meso-epithelial cell | 5.85e-19 | 45 |
endothelial cell of vascular tree | 6.04e-17 | 24 |
endothelial cell | 2.03e-16 | 36 |
epithelial cell | 3.96e-15 | 253 |
blood vessel endothelial cell | 2.92e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.92e-11 | 18 |
squamous epithelial cell | 2.13e-10 | 63 |
embryonic cell | 3.32e-09 | 250 |
mesothelial cell | 1.00e-07 | 19 |
lymphangioblast | 1.45e-07 | 6 |
endothelial cell of lymphatic vessel | 1.45e-07 | 6 |
vascular lymphangioblast | 1.45e-07 | 6 |
endothelial cell of artery | 2.24e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
vessel | 2.18e-24 | 68 |
epithelial tube | 1.15e-22 | 117 |
vasculature | 1.84e-21 | 78 |
vascular system | 1.84e-21 | 78 |
epithelial tube open at both ends | 4.67e-21 | 59 |
blood vessel | 4.67e-21 | 59 |
blood vasculature | 4.67e-21 | 59 |
vascular cord | 4.67e-21 | 59 |
splanchnic layer of lateral plate mesoderm | 1.08e-19 | 83 |
cardiovascular system | 2.51e-17 | 109 |
circulatory system | 2.28e-16 | 112 |
artery | 1.76e-15 | 42 |
arterial blood vessel | 1.76e-15 | 42 |
arterial system | 1.76e-15 | 42 |
simple squamous epithelium | 1.04e-12 | 22 |
anatomical conduit | 3.78e-12 | 240 |
larynx | 4.87e-12 | 9 |
squamous epithelium | 5.39e-12 | 25 |
systemic artery | 1.41e-11 | 33 |
systemic arterial system | 1.41e-11 | 33 |
blood vessel endothelium | 2.92e-11 | 18 |
endothelium | 2.92e-11 | 18 |
cardiovascular system endothelium | 2.92e-11 | 18 |
tube | 4.24e-10 | 192 |
unilaminar epithelium | 1.23e-09 | 148 |
mesenchyme | 1.89e-08 | 160 |
entire embryonic mesenchyme | 1.89e-08 | 160 |
aorta | 9.51e-08 | 21 |
aortic system | 9.51e-08 | 21 |
upper respiratory tract | 2.14e-07 | 19 |
endothelial tube | 2.24e-07 | 9 |
arterial system endothelium | 2.24e-07 | 9 |
endothelium of artery | 2.24e-07 | 9 |
epithelium | 8.39e-07 | 306 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.39e-10 | 106 |
cell type cancer | 3.11e-07 | 143 |