FFCP PHASE1:Hg19::chr3:18486936..18486954,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:18486936..18486954,- | |||
|coexpression_cluster_id=C1622 | |coexpression_cluster_id=C1622 | ||
|description=CAGE_peak_at_chr3:18486936..18486954,- | |description=CAGE_peak_at_chr3:18486936..18486954,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000791!2.59e-27!18;CL:0000789!2.59e-27!18;CL:0002420!2.59e-27!18;CL:0002419!2.59e-27!18;CL:0000790!2.59e-27!18;CL:0000838!1.76e-26!52;CL:0000084!4.08e-26!25;CL:0000827!4.08e-26!25;CL:0000542!8.30e-26!53;CL:0000051!8.30e-26!53;CL:0000037!1.71e-19!172;CL:0000566!1.71e-19!172;CL:0000625!4.90e-19!11;CL:0000738!6.21e-18!140;CL:0000988!1.30e-17!182;CL:0002087!1.74e-17!119;CL:0002032!1.34e-16!165;CL:0000837!1.34e-16!165;CL:0002031!6.23e-14!124;CL:0000624!1.11e-08!6;CL:0000842!1.26e-07!3;CL:0000623!9.29e-07!3;CL:0000825!9.29e-07!3;CL:0000236!9.42e-07!14 | |ontology_enrichment_celltype=CL:0000791!2.59e-27!18;CL:0000789!2.59e-27!18;CL:0002420!2.59e-27!18;CL:0002419!2.59e-27!18;CL:0000790!2.59e-27!18;CL:0000838!1.76e-26!52;CL:0000084!4.08e-26!25;CL:0000827!4.08e-26!25;CL:0000542!8.30e-26!53;CL:0000051!8.30e-26!53;CL:0000037!1.71e-19!172;CL:0000566!1.71e-19!172;CL:0000625!4.90e-19!11;CL:0000738!6.21e-18!140;CL:0000988!1.30e-17!182;CL:0002087!1.74e-17!119;CL:0002032!1.34e-16!165;CL:0000837!1.34e-16!165;CL:0002031!6.23e-14!124;CL:0000624!1.11e-08!6;CL:0000842!1.26e-07!3;CL:0000623!9.29e-07!3;CL:0000825!9.29e-07!3;CL:0000236!9.42e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000226;1.06e-28;3!CL:0000842;1.06e-28;3!CL:0000791;3.02e-25;18!CL:0000789;3.02e-25;18!CL:0002419;3.02e-25;18!CL:0000084;2.26e-23;25!CL:0000625;1.42e-21;11!CL:0000542;7.79e-14;53!CL:0000624;2.57e-07;6!CL:0000236;4.66e-07;13 | |ontology_enrichment_celltype_v019=CL:0000226;1.06e-28;3!CL:0000842;1.06e-28;3!CL:0000791;3.02e-25;18!CL:0000789;3.02e-25;18!CL:0002419;3.02e-25;18!CL:0000084;2.26e-23;25!CL:0000625;1.42e-21;11!CL:0000542;7.79e-14;53!CL:0000624;2.57e-07;6!CL:0000236;4.66e-07;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000226,1.35e-28,3;CL:0000842,1.35e-28,3;CL:0000791,2.61e-25,18;CL:0000789,2.61e-25,18;CL:0002420,2.61e-25,18;CL:0002419,2.61e-25,18;CL:0000790,2.61e-25,18;CL:0000084,2.37e-23,25;CL:0000827,2.37e-23,25;CL:0000625,1.18e-21,11;CL:0000838,2.52e-20,52;CL:0000542,6.53e-20,53;CL:0000051,6.53e-20,53;CL:0002087,1.07e-13,115;CL:0000738,2.99e-11,136;CL:0000037,3.96e-10,168;CL:0000988,1.71e-09,177;CL:0002031,8.85e-08,120;CL:0000624,2.61e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000790;3.02e-25;18!CL:0000051;7.79e-14;53 | |ontology_enrichment_development_v019=CL:0000790;3.02e-25;18!CL:0000051;7.79e-14;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!4.83e-10!15;UBERON:0000179!4.83e-10!15;UBERON:0000463!4.83e-10!15;UBERON:0004177!4.58e-07!7 | |ontology_enrichment_uberon=UBERON:0000178!4.83e-10!15;UBERON:0000179!4.83e-10!15;UBERON:0000463!4.83e-10!15;UBERON:0004177!4.58e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;7.68e-21;2!UBERON:0005058;7.68e-21;2!UBERON:0009113;7.68e-21;2!UBERON:0004177;6.87e-09;5!UBERON:0005057;6.87e-09;5!UBERON:0002390;7.79e-07;32 | |ontology_enrichment_uberon_v019=UBERON:0002370;7.68e-21;2!UBERON:0005058;7.68e-21;2!UBERON:0009113;7.68e-21;2!UBERON:0004177;6.87e-09;5!UBERON:0005057;6.87e-09;5!UBERON:0002390;7.79e-07;32 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.78e-11,4;UBERON:0005058,6.78e-11,4;UBERON:0009113,6.78e-11,4;UBERON:0003295,6.78e-11,4;UBERON:0005562,6.78e-11,4;UBERON:0003351,1.52e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0.224723484445085,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0.400395987036012,1.14950487990897,0.661044872784862,0,1.1384259382189,0.587237189370939,1.91136614062614,2.64342657158052,0.560508562981536,0.263384084775077,0.590129310341499,1.17903228824749,0.205601498999509,0.167186495390678,2.60737813306872,0.473447805734733,1.94826728407911,0.111410456885174,0.294605907474837,0,0,0.128091319725675,0.130059347559878,0,0,0,2.22429844743091,1.60524496853828,0,0.113309342697566,0,0,0.506039384039006,1.27426165729639,0.651083453856419,0.950452044448374,0.752875595388864,0.76791966692651,0,0.710331756132051,1.64225599384209,2.21767417547206,1.33720097891754,2.60683926989038,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0.591092280605782,0.215627574859517,0.641715181398742,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24060815673732,1.07857100409308,1.38745825144478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0.764637207142375,0.569647187174163,0.238231775457789,0,0,0.540031437238115,0.79312517629427,0,0,0,0,0,0.284567373393656,0.159426272728822,0.399158742865633,0.383010740264733,0.211673582723883,0,0,0.228234679033192,0.313359791546046,0,0,0,0,0,0,0.307240764308458,0,0.166849141711909,0.19538809540204,0,0,0,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,1.02314474045374,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,1.05154941711726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.751145584238999,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0.394308725006267,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0.345786262321089,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.126831620387814,0,0,0,0.351742488719241,0,0,0,0,0,0,0,0,0,0.460409414939944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0.257831551894309,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0,0.23806443146374,7.04019117212467,5.27635071514792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.603821380773079,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0.224723484445085,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0.400395987036012,1.14950487990897,0.661044872784862,0,1.1384259382189,0.587237189370939,1.91136614062614,2.64342657158052,0.560508562981536,0.263384084775077,0.590129310341499,1.17903228824749,0.205601498999509,0.167186495390678,2.60737813306872,0.473447805734733,1.94826728407911,0.111410456885174,0.294605907474837,0,0,0.128091319725675,0.130059347559878,0,0,0,2.22429844743091,1.60524496853828,0,0.113309342697566,0,0,0.506039384039006,1.27426165729639,0.651083453856419,0.950452044448374,0.752875595388864,0.76791966692651,0,0.710331756132051,1.64225599384209,2.21767417547206,1.33720097891754,2.60683926989038,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0.591092280605782,0.215627574859517,0.641715181398742,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24060815673732,1.07857100409308,1.38745825144478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0.764637207142375,0.569647187174163,0.238231775457789,0,0,0.540031437238115,0.79312517629427,0,0,0,0,0,0.284567373393656,0.159426272728822,0.399158742865633,0.383010740264733,0.211673582723883,0,0,0.228234679033192,0.313359791546046,0,0,0,0,0,0,0.307240764308458,0,0.166849141711909,0.19538809540204,0,0,0,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,1.02314474045374,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,1.05154941711726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.751145584238999,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0.394308725006267,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0.345786262321089,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.126831620387814,0,0,0,0.351742488719241,0,0,0,0,0,0,0,0,0,0.460409414939944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0.257831551894309,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0,0.23806443146374,7.04019117212467,5.27635071514792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.603821380773079,0 | ||
|short_description=p@chr3:18486936..18486954,- | |short_description=p@chr3:18486936..18486954,- | ||
}} | }} |
Latest revision as of 18:59, 29 July 2015
Short description: | p@chr3:18486936..18486954, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:18486936..18486954, - |
Coexpression cluster: | C1622_thymus_CD8_Natural_vein_blood_acute_Basophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
single nucleate cell | 1.35e-28 | 3 |
mononuclear cell | 1.35e-28 | 3 |
mature alpha-beta T cell | 2.61e-25 | 18 |
alpha-beta T cell | 2.61e-25 | 18 |
immature T cell | 2.61e-25 | 18 |
mature T cell | 2.61e-25 | 18 |
immature alpha-beta T cell | 2.61e-25 | 18 |
T cell | 2.37e-23 | 25 |
pro-T cell | 2.37e-23 | 25 |
CD8-positive, alpha-beta T cell | 1.18e-21 | 11 |
lymphoid lineage restricted progenitor cell | 2.52e-20 | 52 |
lymphocyte | 6.53e-20 | 53 |
common lymphoid progenitor | 6.53e-20 | 53 |
nongranular leukocyte | 1.07e-13 | 115 |
leukocyte | 2.99e-11 | 136 |
hematopoietic stem cell | 3.96e-10 | 168 |
hematopoietic cell | 1.71e-09 | 177 |
hematopoietic lineage restricted progenitor cell | 8.85e-08 | 120 |
CD4-positive, alpha-beta T cell | 2.61e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
thymus | 6.78e-11 | 4 |
hemolymphoid system gland | 6.78e-11 | 4 |
thymic region | 6.78e-11 | 4 |
pharyngeal gland | 6.78e-11 | 4 |
thymus primordium | 6.78e-11 | 4 |
pharyngeal epithelium | 1.52e-07 | 6 |