FFCP PHASE1:Hg19::chr3:9142472..9142491,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:9142472..9142491,+ | |||
|coexpression_cluster_id=C2558 | |coexpression_cluster_id=C2558 | ||
|description=CAGE_peak_at_chr3:9142472..9142491,+ | |description=CAGE_peak_at_chr3:9142472..9142491,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002009!7.24e-49!65;CL:0002194!2.84e-47!63;CL:0000576!2.84e-47!63;CL:0000040!2.84e-47!63;CL:0000559!2.84e-47!63;CL:0000557!3.97e-44!71;CL:0000766!9.60e-44!76;CL:0000839!7.62e-42!70;CL:0002057!3.41e-39!42;CL:0000860!3.42e-36!45;CL:0000763!3.54e-31!112;CL:0000049!3.54e-31!112;CL:0000738!6.07e-25!140;CL:0002087!2.66e-23!119;CL:0002031!4.63e-22!124;CL:0000037!9.72e-19!172;CL:0000566!9.72e-19!172;CL:0002032!1.58e-18!165;CL:0000837!1.58e-18!165;CL:0000988!3.00e-17!182;CL:0002619!4.19e-13!3;CL:0000235!2.75e-09!10;CL:0002393!4.88e-07!9;CL:0002397!4.88e-07!9 | |ontology_enrichment_celltype=CL:0002009!7.24e-49!65;CL:0002194!2.84e-47!63;CL:0000576!2.84e-47!63;CL:0000040!2.84e-47!63;CL:0000559!2.84e-47!63;CL:0000557!3.97e-44!71;CL:0000766!9.60e-44!76;CL:0000839!7.62e-42!70;CL:0002057!3.41e-39!42;CL:0000860!3.42e-36!45;CL:0000763!3.54e-31!112;CL:0000049!3.54e-31!112;CL:0000738!6.07e-25!140;CL:0002087!2.66e-23!119;CL:0002031!4.63e-22!124;CL:0000037!9.72e-19!172;CL:0000566!9.72e-19!172;CL:0002032!1.58e-18!165;CL:0000837!1.58e-18!165;CL:0000988!3.00e-17!182;CL:0002619!4.19e-13!3;CL:0000235!2.75e-09!10;CL:0002393!4.88e-07!9;CL:0002397!4.88e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000473;8.13e-36;39!CL:0000234;8.13e-36;39!CL:0000576;7.20e-34;48!CL:0000766;1.28e-31;69!CL:0000860;2.08e-30;33!CL:0002057;2.08e-30;33!CL:0002619;3.43e-30;3!CL:0002393;8.52e-15;6!CL:0002397;8.52e-15;6!CL:0000235;1.57e-14;6!CL:0002087;3.01e-11;104!CL:0000763;8.08e-11;100!CL:0000738;6.58e-07;136 | |ontology_enrichment_celltype_v019=CL:0000473;8.13e-36;39!CL:0000234;8.13e-36;39!CL:0000576;7.20e-34;48!CL:0000766;1.28e-31;69!CL:0000860;2.08e-30;33!CL:0002057;2.08e-30;33!CL:0002619;3.43e-30;3!CL:0002393;8.52e-15;6!CL:0002397;8.52e-15;6!CL:0000235;1.57e-14;6!CL:0002087;3.01e-11;104!CL:0000763;8.08e-11;100!CL:0000738;6.58e-07;136 | ||
|ontology_enrichment_celltype_v019_2=CL:0002194,1.89e-60,59;CL:0000576,1.89e-60,59;CL:0000040,1.89e-60,59;CL:0000559,1.89e-60,59;CL:0002009,2.04e-58,61;CL:0000473,3.73e-54,48;CL:0000234,3.73e-54,48;CL:0000839,7.25e-54,66;CL:0000557,4.90e-53,67;CL:0000766,3.16e-49,72;CL:0000860,4.88e-42,42;CL:0002057,4.88e-42,42;CL:0000763,4.30e-32,108;CL:0000049,4.30e-32,108;CL:0002619,3.43e-30,3;CL:0002087,5.41e-30,115;CL:0002031,1.22e-28,120;CL:0000738,5.64e-25,136;CL:0002032,1.09e-20,161;CL:0000837,1.09e-20,161;CL:0000037,1.02e-19,168;CL:0000988,1.42e-18,177;CL:0000235,1.81e-14,6;CL:0002393,4.45e-10,9;CL:0002397,4.45e-10,9;CL:0000134,8.06e-08,354;CL:0002320,1.31e-07,361;CL:0000219,7.36e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;2.54e-29;42!UBERON:0005425;1.40e-10;1!CL:0000049;2.32e-07;108 | |ontology_enrichment_development_v019=CL:0002057;2.54e-29;42!UBERON:0005425;1.40e-10;1!CL:0000049;2.32e-07;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.45e-38!80;UBERON:0001474!3.83e-35!86;UBERON:0002390!8.50e-35!102;UBERON:0003061!8.50e-35!102;UBERON:0002193!5.37e-33!112;UBERON:0002405!6.88e-30!115;UBERON:0004765!8.27e-29!101;UBERON:0001434!8.27e-29!101;UBERON:0002204!1.93e-14!167;UBERON:0003081!3.86e-12!216;UBERON:0005162!2.01e-08!2;UBERON:0000122!2.01e-08!2;UBERON:0000062!6.01e-07!511 | |ontology_enrichment_uberon=UBERON:0002371!2.45e-38!80;UBERON:0001474!3.83e-35!86;UBERON:0002390!8.50e-35!102;UBERON:0003061!8.50e-35!102;UBERON:0002193!5.37e-33!112;UBERON:0002405!6.88e-30!115;UBERON:0004765!8.27e-29!101;UBERON:0001434!8.27e-29!101;UBERON:0002204!1.93e-14!167;UBERON:0003081!3.86e-12!216;UBERON:0005162!2.01e-08!2;UBERON:0000122!2.01e-08!2;UBERON:0000062!6.01e-07!511 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.40e-10;1!UBERON:0001785;1.40e-10;1!UBERON:0002464;1.40e-10;1!UBERON:0004904;1.40e-10;1!UBERON:0001021;1.40e-10;1 | |ontology_enrichment_uberon_v019=UBERON:0000941;1.40e-10;1!UBERON:0001785;1.40e-10;1!UBERON:0002464;1.40e-10;1!UBERON:0004904;1.40e-10;1!UBERON:0001021;1.40e-10;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.56e-46,76;UBERON:0001474,5.56e-43,82;UBERON:0004765,5.70e-39,90;UBERON:0002405,1.21e-37,93;UBERON:0002390,1.32e-35,98;UBERON:0003061,1.32e-35,98;UBERON:0001434,7.55e-35,100;UBERON:0002193,4.30e-32,108;UBERON:0002204,7.52e-20,167;UBERON:0003081,7.66e-16,203;UBERON:0000941,1.21e-10,1;UBERON:0001785,1.21e-10,1;UBERON:0002464,1.21e-10,1;UBERON:0004904,1.21e-10,1;UBERON:0001021,1.21e-10,1;UBERON:0003902,1.21e-10,1;UBERON:0005425,1.21e-10,1;UBERON:0000926,3.61e-09,315;UBERON:0004120,3.61e-09,315;UBERON:0006603,3.61e-09,315;UBERON:0002384,2.56e-07,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0.464448369948228,0,0,0,0,0,0,4.43196326825502,3.00816671205213,1.95309783644267,6.26963327871788,7.12566065241755,6.95454032612304,0,0,0,0.232429036905685,1.23350366406548,2.78735733805593,0,0,0.236482229888585,1.03423704220986,5.16387746867061,6.77132432971709,0,0.272906150057846,0.449446968890169,0,4.17207735198922,3.19668562899521,0,0,0,0.870627715885752,2.26954089876456,3.73693349397345,0,0.521482918420201,0,0.605399502633369,5.52416453981347,6.64571013625857,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46217006087397,0.702012795417713,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,1.00451418286425,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250381861413,0,0.332787154610557,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0.0673520530145875,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0.464448369948228,0,0,0,0,0,0,4.43196326825502,3.00816671205213,1.95309783644267,6.26963327871788,7.12566065241755,6.95454032612304,0,0,0,0.232429036905685,1.23350366406548,2.78735733805593,0,0,0.236482229888585,1.03423704220986,5.16387746867061,6.77132432971709,0,0.272906150057846,0.449446968890169,0,4.17207735198922,3.19668562899521,0,0,0,0.870627715885752,2.26954089876456,3.73693349397345,0,0.521482918420201,0,0.605399502633369,5.52416453981347,6.64571013625857,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46217006087397,0.702012795417713,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,1.00451418286425,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250381861413,0,0.332787154610557,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0.0673520530145875,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:9142472..9142491,+ | |short_description=p@chr3:9142472..9142491,+ | ||
}} | }} |
Latest revision as of 23:52, 29 July 2015
Short description: | p@chr3:9142472..9142491, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:9142472..9142491, + |
Coexpression cluster: | C2558_CD14_Monocytederived_Macrophage_spleen_dura_lymph_left |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 1.89e-60 | 59 |
monocyte | 1.89e-60 | 59 |
monoblast | 1.89e-60 | 59 |
promonocyte | 1.89e-60 | 59 |
macrophage dendritic cell progenitor | 2.04e-58 | 61 |
defensive cell | 3.73e-54 | 48 |
phagocyte | 3.73e-54 | 48 |
myeloid lineage restricted progenitor cell | 7.25e-54 | 66 |
granulocyte monocyte progenitor cell | 4.90e-53 | 67 |
myeloid leukocyte | 3.16e-49 | 72 |
classical monocyte | 4.88e-42 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.88e-42 | 42 |
myeloid cell | 4.30e-32 | 108 |
common myeloid progenitor | 4.30e-32 | 108 |
adult endothelial progenitor cell | 3.43e-30 | 3 |
nongranular leukocyte | 5.41e-30 | 115 |
hematopoietic lineage restricted progenitor cell | 1.22e-28 | 120 |
leukocyte | 5.64e-25 | 136 |
hematopoietic oligopotent progenitor cell | 1.09e-20 | 161 |
hematopoietic multipotent progenitor cell | 1.09e-20 | 161 |
hematopoietic stem cell | 1.02e-19 | 168 |
hematopoietic cell | 1.42e-18 | 177 |
macrophage | 1.81e-14 | 6 |
intermediate monocyte | 4.45e-10 | 9 |
CD14-positive, CD16-positive monocyte | 4.45e-10 | 9 |
mesenchymal cell | 8.06e-08 | 354 |
connective tissue cell | 1.31e-07 | 361 |
motile cell | 7.36e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.56e-46 | 76 |
bone element | 5.56e-43 | 82 |
skeletal element | 5.70e-39 | 90 |
immune system | 1.21e-37 | 93 |
hematopoietic system | 1.32e-35 | 98 |
blood island | 1.32e-35 | 98 |
skeletal system | 7.55e-35 | 100 |
hemolymphoid system | 4.30e-32 | 108 |
musculoskeletal system | 7.52e-20 | 167 |
lateral plate mesoderm | 7.66e-16 | 203 |
cranial nerve II | 1.21e-10 | 1 |
cranial nerve | 1.21e-10 | 1 |
nerve trunk | 1.21e-10 | 1 |
nerve connecting eye with brain | 1.21e-10 | 1 |
nerve | 1.21e-10 | 1 |
retinal neural layer | 1.21e-10 | 1 |
presumptive neural retina | 1.21e-10 | 1 |
mesoderm | 3.61e-09 | 315 |
mesoderm-derived structure | 3.61e-09 | 315 |
presumptive mesoderm | 3.61e-09 | 315 |
connective tissue | 2.56e-07 | 371 |