FFCP PHASE1:Hg19::chr4:145580835..145580860,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:145580835..145580860,+ | |||
|coexpression_cluster_id=C28 | |coexpression_cluster_id=C28 | ||
|description=CAGE_peak_at_chr4:145580835..145580860,+ | |description=CAGE_peak_at_chr4:145580835..145580860,+ | ||
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|ontology_enrichment_celltype=CL:1000413!1.46e-30!9;CL:0000071!1.27e-25!18;CL:0002546!1.27e-25!18;CL:0002139!1.14e-21!24;CL:0002544!3.32e-21!6;CL:0000115!7.04e-14!35;CL:0002078!3.21e-12!44;CL:0000222!1.79e-10!119;CL:0000213!3.82e-10!57;CL:0000215!3.82e-10!57;CL:0002545!2.33e-08!2;CL:0002589!1.40e-07!2 | |ontology_enrichment_celltype=CL:1000413!1.46e-30!9;CL:0000071!1.27e-25!18;CL:0002546!1.27e-25!18;CL:0002139!1.14e-21!24;CL:0002544!3.32e-21!6;CL:0000115!7.04e-14!35;CL:0002078!3.21e-12!44;CL:0000222!1.79e-10!119;CL:0000213!3.82e-10!57;CL:0000215!3.82e-10!57;CL:0002545!2.33e-08!2;CL:0002589!1.40e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002581;9.48e-18;1!CL:1000413;4.78e-17;9!CL:0002544;6.34e-12;6!CL:0002545;1.51e-09;2!CL:0000071;7.76e-09;18!CL:0000632;8.86e-07;3!CL:0002139;9.22e-07;24 | |ontology_enrichment_celltype_v019=CL:0002581;9.48e-18;1!CL:1000413;4.78e-17;9!CL:0002544;6.34e-12;6!CL:0002545;1.51e-09;2!CL:0000071;7.76e-09;18!CL:0000632;8.86e-07;3!CL:0002139;9.22e-07;24 | ||
|ontology_enrichment_celltype_v019_2=CL:0002581,8.72e-18,1;CL:1000413,5.49e-17,9;CL:0002544,6.70e-12,6;CL:0002545,1.22e-09,2;CL:0000071,8.30e-09,18;CL:0002546,8.30e-09,18;CL:0000632,9.12e-07,3;CL:0002139,9.69e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002546;7.76e-09;18 | |ontology_enrichment_development_v019=CL:0002546;7.76e-09;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0002370;1.11e-34;2!UBERON:0005058;1.11e-34;2!UBERON:0009113;1.11e-34;2!UBERON:0003915;4.78e-17;9!UBERON:0004700;4.78e-17;9!UBERON:0001917;4.78e-17;9!UBERON:0004177;1.61e-14;5!UBERON:0005057;1.61e-14;5!UBERON:0005800;1.51e-09;2!UBERON:0001515;1.51e-09;2!UBERON:0005406;1.51e-09;2!UBERON:0004638;7.76e-09;18!UBERON:0001986;7.76e-09;18!UBERON:0004852;7.76e-09;18!UBERON:0000487;2.49e-07;22 | |ontology_enrichment_uberon_v019=UBERON:0002370;1.11e-34;2!UBERON:0005058;1.11e-34;2!UBERON:0009113;1.11e-34;2!UBERON:0003915;4.78e-17;9!UBERON:0004700;4.78e-17;9!UBERON:0001917;4.78e-17;9!UBERON:0004177;1.61e-14;5!UBERON:0005057;1.61e-14;5!UBERON:0005800;1.51e-09;2!UBERON:0001515;1.51e-09;2!UBERON:0005406;1.51e-09;2!UBERON:0004638;7.76e-09;18!UBERON:0001986;7.76e-09;18!UBERON:0004852;7.76e-09;18!UBERON:0000487;2.49e-07;22 | ||
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| ||
|short_description=p@chr4:145580835..145580860,+ | |short_description=p@chr4:145580835..145580860,+ | ||
}} | }} |
Latest revision as of 02:01, 30 July 2015
Short description: | p@chr4:145580835..145580860, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:145580835..145580860, + |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
perirenal preadipocyte | 8.72e-18 | 1 |
endothelial cell of artery | 5.49e-17 | 9 |
aortic endothelial cell | 6.70e-12 | 6 |
thoracic aorta endothelial cell | 1.22e-09 | 2 |
blood vessel endothelial cell | 8.30e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.30e-09 | 18 |
hepatic stellate cell | 9.12e-07 | 3 |
endothelial cell of vascular tree | 9.69e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
thymus | 6.79e-18 | 4 |
hemolymphoid system gland | 6.79e-18 | 4 |
thymic region | 6.79e-18 | 4 |
pharyngeal gland | 6.79e-18 | 4 |
thymus primordium | 6.79e-18 | 4 |
endothelial tube | 5.49e-17 | 9 |
arterial system endothelium | 5.49e-17 | 9 |
endothelium of artery | 5.49e-17 | 9 |
pharyngeal epithelium | 2.91e-12 | 6 |
hemopoietic organ | 1.21e-10 | 7 |
immune organ | 1.21e-10 | 7 |
segment of aorta | 1.22e-09 | 2 |
thoracic aorta | 1.22e-09 | 2 |
perirenal fat | 1.44e-09 | 2 |
blood vessel endothelium | 8.30e-09 | 18 |
endothelium | 8.30e-09 | 18 |
cardiovascular system endothelium | 8.30e-09 | 18 |
neck | 1.02e-07 | 10 |
gland of gut | 1.02e-07 | 10 |
chordate pharynx | 1.02e-07 | 10 |
pharyngeal region of foregut | 1.02e-07 | 10 |
simple squamous epithelium | 2.64e-07 | 22 |
pharynx | 4.30e-07 | 11 |
entire pharyngeal arch endoderm | 4.30e-07 | 11 |
early pharyngeal endoderm | 4.30e-07 | 11 |