FFCP PHASE1:Hg19::chr4:70707689..70707711,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:70707689..70707711,-
|short_description=p@chr4:70707689..70707711,-
|description=CAGE_peak_at_chr4:70707689..70707711,-
|association_with_transcript=NA
|E...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr4:70707689..70707711,- | |||
|coexpression_cluster_id=C2795 | |||
|description=CAGE_peak_at_chr4:70707689..70707711,- | |||
|id=chr4:70707689..70707711,- | |||
|ontology_enrichment_celltype=CL:0002564!3.99e-11!3;CL:0000188!5.44e-09!9;CL:1000306!6.84e-09!4;CL:0002547!6.84e-09!4;CL:0002549!3.15e-08!2;CL:0002494!3.63e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:1000306;1.82e-32;4!CL:0002547;1.82e-32;4!CL:0002564;1.15e-19;3!CL:0002557;5.56e-16;1!CL:0002548;1.46e-10;6!CL:0002494;1.09e-08;16!CL:0002549;1.39e-08;2!CL:0002600;2.40e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000306,1.18e-32,4;CL:0002547,1.18e-32,4;CL:0002564,2.04e-19,3;CL:0002557,5.56e-16,1;CL:0002548,1.43e-10,6;CL:0000057,8.96e-09,76;CL:0002494,1.09e-08,16;CL:0002549,1.39e-08,2;CL:0002600,2.31e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002200!1.77e-14!11;UBERON:0006876!1.77e-14!11;UBERON:0005284!1.02e-11!5;UBERON:0002242!3.99e-11!3;UBERON:0003068!3.99e-11!3;UBERON:0002328!3.99e-11!3;UBERON:0004880!3.99e-11!3;UBERON:0000415!6.84e-09!4;UBERON:0007240!6.84e-09!4;UBERON:0005742!6.84e-09!4;UBERON:0005734!6.84e-09!4;UBERON:0004664!6.84e-09!4;UBERON:0004663!6.84e-09!4;UBERON:0003947!3.15e-08!2;UBERON:0005629!3.15e-08!2;UBERON:0005358!3.15e-08!2;UBERON:0001886!3.15e-08!2;UBERON:0004086!3.15e-08!2;UBERON:0005282!3.15e-08!2;UBERON:0005281!3.15e-08!2;UBERON:0004535!1.37e-07!110;UBERON:0001009!2.88e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0004797;1.82e-32;4!UBERON:0000415;1.82e-32;4!UBERON:0007240;1.82e-32;4!UBERON:0005742;1.82e-32;4!UBERON:0005734;1.82e-32;4!UBERON:0004664;1.82e-32;4!UBERON:0004663;1.82e-32;4!UBERON:0002242;1.15e-19;3!UBERON:0002108;3.35e-12;4!UBERON:0011135;3.35e-12;5!UBERON:0002216;3.35e-12;5!UBERON:0011134;3.35e-12;5!UBERON:0002209;3.35e-12;5!UBERON:0002213;3.35e-12;5!UBERON:0007844;3.35e-12;5!UBERON:0011138;3.35e-12;5!UBERON:0001130;3.35e-12;5!UBERON:0001066;3.35e-12;5!UBERON:0001468;3.35e-12;5!UBERON:0000078;1.20e-08;2!UBERON:0002012;1.20e-08;2!UBERON:0008886;1.20e-08;2!UBERON:0005629;1.39e-08;2!UBERON:0005358;1.39e-08;2!UBERON:0001886;1.39e-08;2!UBERON:0004086;1.39e-08;2!UBERON:0005282;1.39e-08;2!UBERON:0005281;1.39e-08;2!UBERON:0004905;5.76e-08;8!UBERON:0000982;5.76e-08;8!UBERON:0004770;5.76e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000415,1.18e-32,4;UBERON:0007240,1.18e-32,4;UBERON:0005742,1.18e-32,4;UBERON:0005734,1.18e-32,4;UBERON:0004664,1.18e-32,4;UBERON:0004663,1.18e-32,4;UBERON:0002242,2.04e-19,3;UBERON:0003068,2.04e-19,3;UBERON:0002328,2.04e-19,3;UBERON:0004880,2.04e-19,3;UBERON:0004797,5.57e-19,7;UBERON:0002108,2.82e-12,4;UBERON:0011135,4.70e-12,5;UBERON:0002216,4.70e-12,5;UBERON:0011134,4.70e-12,5;UBERON:0002209,4.70e-12,5;UBERON:0002213,4.70e-12,5;UBERON:0005856,4.70e-12,5;UBERON:0005866,4.70e-12,5;UBERON:0005863,4.70e-12,5;UBERON:0007844,4.70e-12,5;UBERON:0011138,4.70e-12,5;UBERON:0001130,4.70e-12,5;UBERON:0001066,4.70e-12,5;UBERON:0001468,4.70e-12,5;UBERON:0000948,6.51e-10,24;UBERON:0005498,6.51e-10,24;UBERON:0004140,6.51e-10,24;UBERON:0009881,6.51e-10,24;UBERON:0004141,6.51e-10,24;UBERON:0003084,6.51e-10,24;UBERON:0007005,6.51e-10,24;UBERON:0004139,6.51e-10,24;UBERON:0004291,6.51e-10,24;UBERON:0007100,7.75e-09,27;UBERON:0000078,1.20e-08,2;UBERON:0007497,1.20e-08,2;UBERON:0003643,1.20e-08,2;UBERON:0003504,1.20e-08,2;UBERON:0003469,1.20e-08,2;UBERON:0003496,1.20e-08,2;UBERON:0002012,1.20e-08,2;UBERON:0008886,1.20e-08,2;UBERON:0007303,1.20e-08,2;UBERON:0002061,1.20e-08,2;UBERON:0005432,1.20e-08,2;UBERON:0004363,1.20e-08,2;UBERON:0005629,1.39e-08,2;UBERON:0005358,1.39e-08,2;UBERON:0001886,1.39e-08,2;UBERON:0004086,1.39e-08,2;UBERON:0005282,1.39e-08,2;UBERON:0005281,1.39e-08,2;UBERON:0004872,5.68e-08,83;UBERON:0004905,7.10e-08,8;UBERON:0000982,7.10e-08,8;UBERON:0004770,7.10e-08,8;UBERON:0004535,1.01e-07,109;UBERON:0001009,1.71e-07,112 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,0.12786256184353,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.417989933073621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.72446121153937,0,1.43418310374407,1.41867352879343,0,0,0.49333509683432,0,3.23305612967251,2.61539044981534,0.756787138224657,6.91411109375999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.2088964844019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0.590789906681404,0,0.122988438543114,0.857839051492628,0.109750285408626,0,0.100528972411631,0,0,0,0,0,0.234817388471643,0,0,0.380508304469197,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30788020649984,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2269149171914,1.00034104211935,0.271265023699736,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0.154048617114644,0.767518373630648,0.137836572484531,0.751941714077915,0.290033387828457,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0.949138274156178,0.953150969619124,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0.731140468893853,0,0,0,0,0,0,0,0,1.31178950409327,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173858272302579,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0.308696632431779,1.31135736302374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,0.12786256184353,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.417989933073621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.72446121153937,0,1.43418310374407,1.41867352879343,0,0,0.49333509683432,0,3.23305612967251,2.61539044981534,0.756787138224657,6.91411109375999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.2088964844019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0.590789906681404,0,0.122988438543114,0.857839051492628,0.109750285408626,0,0.100528972411631,0,0,0,0,0,0.234817388471643,0,0,0.380508304469197,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30788020649984,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2269149171914,1.00034104211935,0.271265023699736,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0.154048617114644,0.767518373630648,0.137836572484531,0.751941714077915,0.290033387828457,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0.949138274156178,0.953150969619124,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0.731140468893853,0,0,0,0,0,0,0,0,1.31178950409327,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173858272302579,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0.308696632431779,1.31135736302374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr4:70707689..70707711,- | |||
}} | }} |
Latest revision as of 06:15, 30 July 2015
Short description: | p@chr4:70707689..70707711, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:70707689..70707711, - |
Coexpression cluster: | C2795_Fibroblast_Cardiac_Meningeal_Nucleus_lung_uterus_Skeletal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of tunica adventitia of artery | 1.18e-32 | 4 |
fibroblast of the aortic adventitia | 1.18e-32 | 4 |
nucleus pulposus cell of intervertebral disc | 2.04e-19 | 3 |
fibroblast of pulmonary artery | 5.56e-16 | 1 |
cardiac fibroblast | 1.43e-10 | 6 |
fibroblast | 8.96e-09 | 76 |
cardiocyte | 1.09e-08 | 16 |
fibroblast of choroid plexus | 1.39e-08 | 2 |
smooth muscle cell of trachea | 2.31e-08 | 2 |