FFCP PHASE1:Hg19::chr5:135382143..135382154,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:135382143..135382154,- | |||
|coexpression_cluster_id=C295 | |||
|description=CAGE_peak_at_chr5:135382143..135382154,- | |description=CAGE_peak_at_chr5:135382143..135382154,- | ||
|id=chr5:135382143..135382154,- | |id=chr5:135382143..135382154,- | ||
|ontology_enrichment_celltype=CL:0000055!4.80e-24!180;CL:0000057!2.53e-16!75;CL:0000048!6.02e-11!430;CL:0000144!8.68e-11!625;CL:0000723!1.04e-10!436;CL:0002371!1.27e-10!591;CL:0000548!1.67e-10!679;CL:0000004!1.67e-10!679;CL:0000255!1.67e-10!679;CL:0000012!3.02e-10!682;CL:0000034!6.22e-10!444;CL:0000680!8.45e-10!57;CL:0000056!8.45e-10!57;CL:0000355!8.45e-10!57;CL:0002620!3.33e-09!23;CL:0000187!3.21e-08!54;CL:0000003!4.75e-07!722;CL:0000183!6.64e-07!59;CL:0000192!7.46e-07!42;CL:0000514!7.46e-07!42 | |ontology_enrichment_celltype=CL:0000055!4.80e-24!180;CL:0000057!2.53e-16!75;CL:0000048!6.02e-11!430;CL:0000144!8.68e-11!625;CL:0000723!1.04e-10!436;CL:0002371!1.27e-10!591;CL:0000548!1.67e-10!679;CL:0000004!1.67e-10!679;CL:0000255!1.67e-10!679;CL:0000012!3.02e-10!682;CL:0000034!6.22e-10!444;CL:0000680!8.45e-10!57;CL:0000056!8.45e-10!57;CL:0000355!8.45e-10!57;CL:0002620!3.33e-09!23;CL:0000187!3.21e-08!54;CL:0000003!4.75e-07!722;CL:0000183!6.64e-07!59;CL:0000192!7.46e-07!42;CL:0000514!7.46e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0000327;3.09e-14;15!CL:0000153;3.40e-11;9!CL:0000447;3.40e-11;9!CL:0000499;8.42e-10;28!CL:0000138;9.32e-10;6!CL:0000632;4.59e-09;3!CL:0002579;5.49e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000327,2.52e-14,15;CL:0000153,3.24e-11,9;CL:0000447,3.24e-11,9;CL:0000057,1.03e-10,76;CL:0000499,7.29e-10,28;CL:0000058,8.81e-10,6;CL:0000138,8.81e-10,6;CL:0000632,3.47e-09,3;CL:0002579,7.13e-09,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3571;1.09e-07;1!DOID:4235;3.72e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3571,1.06e-07,1;DOID:4235,6.97e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004290!5.06e-09!70;UBERON:0000914!6.60e-09!83;UBERON:0002329!6.60e-09!83;UBERON:0003077!6.60e-09!83;UBERON:0003059!6.60e-09!83;UBERON:0007282!6.60e-09!83;UBERON:0009618!6.60e-09!83;UBERON:0007285!6.60e-09!83;UBERON:0001134!1.34e-08!61;UBERON:0002036!1.34e-08!61;UBERON:0003082!1.34e-08!61;UBERON:0000486!1.70e-08!82;UBERON:0002385!4.60e-08!63;UBERON:0001015!4.60e-08!63;UBERON:0000383!4.60e-08!63;UBERON:0005256!8.38e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;5.72e-11;9!UBERON:0000042;5.72e-11;9!UBERON:0003688;1.68e-09;6!UBERON:0002358;1.68e-09;6!UBERON:0003684;1.68e-09;6!UBERON:0001178;1.68e-09;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.83e-09,6;UBERON:0002358,2.83e-09,6;UBERON:0003684,2.83e-09,6;UBERON:0001178,2.83e-09,6;UBERON:0004457,4.24e-08,12;UBERON:0000042,4.24e-08,12 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.563817616383885,1.0007329835313,0.893922188854576,0,0,0,0,0,0,0,0.791300934685361,0,0,0.672325146451775,0,0,0,0.123121058076788,1.83600622119828,0.940364164434263,0,0.410623275218653,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601633342410425,0,0,0,0,0,0,0.242584061187816,0,0,0,0.575384784644301,0.512321413058201,0,0,0,0,0.188242339542605,0,0,0.612167784741805,0,0,0.329851300186716,0.199463657621632,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0.419317291016752,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53007406669196,0,1.30361867064741,0,3.40644409211845,0,1.33037638477538,0.43917392846563,0,0,0.370784442784429,0.324547393654683,0,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.25326102332916,0.132409180813219,1.14734648299525,0,0.560677600142307,0,2.71334303258876,0,0.134710672069688,0.163461903113459,0,0.576175924479999,0,0.624320153660641,0,0.149448680551801,0.117434498643765,0,0.280901613404497,0,0.122834317311768,0.206651562351531,0,0.494533858557114,0,0,0,0,0,0.438977620880838,0,0.901428353439581,0,0.717558542755448,0.85422955527427,0.211931901159562,2.40072876867522,0.206105058476878,1.54584324027377,0,1.18143432568886,0.389748020644795,1.51460264546469,0.460249493211497,0.161646056818812,2.13005755509969,0,0,0.386521706326594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445893486866185,0,0.335964256397719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.87192013766656,0,0,0,2.535908257668,0,0,0,0,0,0.142977993658148,0,0.823240336780769,0.325736184293735,0.355391948742546,0.791951872933429,0,0,0.099972991182057,0,0,0,0.718874566474748,0,0,0.289562613335158,1.02738161275192,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0.157702415033935,0,0,2.27407504055985,0,0,1.10621501125022,0,0,0,0,0,0,0,0,1.20956117331872,0.992431231275107,0,1.68396056659844,1.02511319404561,0,2.73451665944133,0,0.616838775210622,0.532685175939381,0.0821271560138091,0,0.697262270759755,0,0,0.0920809889358963,0.114814448164607,0,0.786746489756545,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0.924291702687866,1.22802939780904,0.275673144969061,0.214840489736547,0.145016693914229,0.426133137080504,0,0,0.576570202095319,0,0.2023155617111,0,1.5740617341532,0,0.308033580176089,0,0,0.37064843820784,0.858749320451947,0,0,0.38126038784765,0,0,0,0.78494864019923,0.179872457583315,0.274537029736055,0.471249609382746,0.202182481573316,0,1.26377536871694,0,0,1.05650146756755,0.136499911407986,0.989838023675989,0,0.551365343546124,0.66343897524122,1.31535265576129,0,0,0.405820753925408,0.30982349809975,1.40847801266121,0,0,0,0,5.2776908824416,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.0870592065804026,0,0,0,0,0,0,0,0,0,0.794858446811959,0,0,0.320635281006135,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,3.60299883542404,0,0,0,0.13480708770837,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0.653174720218818,0,0,0.340776043570843,0,0,0,0,0,0.171086837884329,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0.298509605773748,0,0,0.189403005275089,0,0,0.228840068396924,0,0.621748802331122,0,0.318593534327405,0,0,0,0.265841714557995,1.04349012362347,0.601030435988874,0,0,0.181848659202559,0.322231671127465,0.928067519756987,0.398095888698616,0.800055529326307,0.686791410365586,0.673498977531838,0,0.385239660814607,0,0,0,0.694567422971502,0,0.537266523244462,0,0,0,0.192914038270915,0.337884881306145,0,0,0.303859956177382,0,0,0,0,0,0.245772908753719,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27201740261367,0,0,0.705351887381368,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0.115525666150338,0,0,0,0,0.20170506870352,0,0,0.163771917510097,0.295712172434091,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0.514464028312255,0,0,0,0,0,0,0.280272163313789,0,0.215927591218621,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0.218559560503957,0.470317296361523,0,0,0,0,0,1.0195626881269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0.924351257262837,1.29787968637137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0.181678379270557,0.428201047781966,0.563817616383885,1.0007329835313,0.893922188854576,0,0,0,0,0,0,0,0.791300934685361,0,0,0.672325146451775,0,0,0,0.123121058076788,1.83600622119828,0.940364164434263,0,0.410623275218653,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601633342410425,0,0,0,0,0,0,0.242584061187816,0,0,0,0.575384784644301,0.512321413058201,0,0,0,0,0.188242339542605,0,0,0.612167784741805,0,0,0.329851300186716,0.199463657621632,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0.419317291016752,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53007406669196,0,1.30361867064741,0,3.40644409211845,0,1.33037638477538,0.43917392846563,0,0,0.370784442784429,0.324547393654683,0,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.25326102332916,0.132409180813219,1.14734648299525,0,0.560677600142307,0,2.71334303258876,0,0.134710672069688,0.163461903113459,0,0.576175924479999,0,0.624320153660641,0,0.149448680551801,0.117434498643765,0,0.280901613404497,0,0.122834317311768,0.206651562351531,0,0.494533858557114,0,0,0,0,0,0.438977620880838,0,0.901428353439581,0,0.717558542755448,0.85422955527427,0.211931901159562,2.40072876867522,0.206105058476878,1.54584324027377,0,1.18143432568886,0.389748020644795,1.51460264546469,0.460249493211497,0.161646056818812,2.13005755509969,0,0,0.386521706326594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445893486866185,0,0.335964256397719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.87192013766656,0,0,0,2.535908257668,0,0,0,0,0,0.142977993658148,0,0.823240336780769,0.325736184293735,0.355391948742546,0.791951872933429,0,0,0.099972991182057,0,0,0,0.718874566474748,0,0,0.289562613335158,1.02738161275192,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0.157702415033935,0,0,2.27407504055985,0,0,1.10621501125022,0,0,0,0,0,0,0,0,1.20956117331872,0.992431231275107,0,1.68396056659844,1.02511319404561,0,2.73451665944133,0,0.616838775210622,0.532685175939381,0.0821271560138091,0,0.697262270759755,0,0,0.0920809889358963,0.114814448164607,0,0.786746489756545,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0.924291702687866,1.22802939780904,0.275673144969061,0.214840489736547,0.145016693914229,0.426133137080504,0,0,0.576570202095319,0,0.2023155617111,0,1.5740617341532,0,0.308033580176089,0,0,0.37064843820784,0.858749320451947,0,0,0.38126038784765,0,0,0,0.78494864019923,0.179872457583315,0.274537029736055,0.471249609382746,0.202182481573316,0,1.26377536871694,0,0,1.05650146756755,0.136499911407986,0.989838023675989,0,0.551365343546124,0.66343897524122,1.31535265576129,0,0,0.405820753925408,0.30982349809975,1.40847801266121,0,0,0,0,5.2776908824416,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.0870592065804026,0,0,0,0,0,0,0,0,0,0.794858446811959,0,0,0.320635281006135,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,3.60299883542404,0,0,0,0.13480708770837,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0.653174720218818,0,0,0.340776043570843,0,0,0,0,0,0.171086837884329,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0.298509605773748,0,0,0.189403005275089,0,0,0.228840068396924,0,0.621748802331122,0,0.318593534327405,0,0,0,0.265841714557995,1.04349012362347,0.601030435988874,0,0,0.181848659202559,0.322231671127465,0.928067519756987,0.398095888698616,0.800055529326307,0.686791410365586,0.673498977531838,0,0.385239660814607,0,0,0,0.694567422971502,0,0.537266523244462,0,0,0,0.192914038270915,0.337884881306145,0,0,0.303859956177382,0,0,0,0,0,0.245772908753719,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27201740261367,0,0,0.705351887381368,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0.115525666150338,0,0,0,0,0.20170506870352,0,0,0.163771917510097,0.295712172434091,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0.514464028312255,0,0,0,0,0,0,0.280272163313789,0,0.215927591218621,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0.218559560503957,0.470317296361523,0,0,0,0,0,1.0195626881269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0.924351257262837,1.29787968637137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr5:135382143..135382154,- | |short_description=p@chr5:135382143..135382154,- | ||
}} | }} |
Latest revision as of 10:01, 30 July 2015
Short description: | p@chr5:135382143..135382154, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:135382143..135382154, - |
Coexpression cluster: | C295_Fibroblast_Smooth_Myoblast_Chondrocyte_hepatic_Synoviocyte_Preadipocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extracellular matrix secreting cell | 2.52e-14 | 15 |
GAG secreting cell | 3.24e-11 | 9 |
carbohydrate secreting cell | 3.24e-11 | 9 |
fibroblast | 1.03e-10 | 76 |
stromal cell | 7.29e-10 | 28 |
chondroblast | 8.81e-10 | 6 |
chondrocyte | 8.81e-10 | 6 |
hepatic stellate cell | 3.47e-09 | 3 |
omentum preadipocyte | 7.13e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.83e-09 | 6 |
peritoneum | 2.83e-09 | 6 |
abdominal cavity | 2.83e-09 | 6 |
visceral peritoneum | 2.83e-09 | 6 |
cavity lining | 4.24e-08 | 12 |
serous membrane | 4.24e-08 | 12 |
Ontology term | p-value | n |
---|---|---|
liver cancer | 1.06e-07 | 1 |
spindle cell sarcoma | 6.97e-07 | 1 |