FFCP PHASE1:Hg19::chr6:106975193..106975220,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:106975193..106975220,+ | |||
|coexpression_cluster_id=C1740 | |||
|description=CAGE_peak_at_chr6:106975193..106975220,+ | |description=CAGE_peak_at_chr6:106975193..106975220,+ | ||
|id=chr6:106975193..106975220,+ | |id=chr6:106975193..106975220,+ | ||
|ontology_enrichment_celltype=CL:0002371!5.25e-16!591;CL:0000144!1.91e-14!625;CL:0000548!1.41e-12!679;CL:0000004!1.41e-12!679;CL:0000255!1.41e-12!679;CL:0000012!2.69e-12!682;CL:0000680!9.78e-11!57;CL:0000056!9.78e-11!57;CL:0000355!9.78e-11!57;CL:0000220!3.40e-10!246;CL:0002321!6.15e-10!248;CL:0000003!8.87e-10!722;CL:0002159!2.05e-09!13;CL:0000187!4.80e-09!54;CL:0002368!4.96e-09!13;CL:0000183!2.46e-08!59;CL:0002076!9.48e-08!43;CL:0000393!2.37e-07!60;CL:0000211!2.37e-07!60;CL:0000192!6.95e-07!42;CL:0000514!6.95e-07!42 | |ontology_enrichment_celltype=CL:0002371!5.25e-16!591;CL:0000144!1.91e-14!625;CL:0000548!1.41e-12!679;CL:0000004!1.41e-12!679;CL:0000255!1.41e-12!679;CL:0000012!2.69e-12!682;CL:0000680!9.78e-11!57;CL:0000056!9.78e-11!57;CL:0000355!9.78e-11!57;CL:0000220!3.40e-10!246;CL:0002321!6.15e-10!248;CL:0000003!8.87e-10!722;CL:0002159!2.05e-09!13;CL:0000187!4.80e-09!54;CL:0002368!4.96e-09!13;CL:0000183!2.46e-08!59;CL:0002076!9.48e-08!43;CL:0000393!2.37e-07!60;CL:0000211!2.37e-07!60;CL:0000192!6.95e-07!42;CL:0000514!6.95e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0002159;1.25e-26;14!CL:0002368;2.64e-23;13!CL:0002076;6.84e-17;42!CL:0002621;4.20e-13;3!CL:0002166;1.11e-12;3!CL:0002328;2.16e-12;3!CL:0002077;2.42e-12;34!CL:0000362;2.32e-11;9!CL:0000240;2.58e-11;6!CL:0000311;2.58e-11;6!CL:0000079;2.58e-11;6!CL:0000237;2.58e-11;6!CL:0002202;1.07e-10;9!CL:0002632;1.07e-10;9!CL:0002327;1.13e-09;4!CL:0000317;4.53e-09;2!CL:1000448;4.53e-09;2!CL:0002308;4.53e-09;2!CL:0002140;4.53e-09;2!CL:0000312;3.47e-08;5!CL:0000575;3.49e-08;2!CL:0000622;9.35e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,2.00e-26,14;CL:0002368,2.52e-23,13;CL:0002076,1.94e-20,42;CL:0002077,4.20e-14,34;CL:0000223,9.93e-14,58;CL:0002621,4.38e-13,3;CL:0002166,1.28e-12,3;CL:0002321,1.94e-12,250;CL:0002328,2.20e-12,3;CL:0000066,1.26e-11,253;CL:0000362,2.25e-11,9;CL:0000240,2.42e-11,6;CL:0000311,2.42e-11,6;CL:0000079,2.42e-11,6;CL:0000237,2.42e-11,6;CL:0000036,2.42e-11,6;CL:0000357,2.42e-11,6;CL:0000114,2.42e-11,6;CL:0002202,1.05e-10,9;CL:0002632,1.05e-10,9;CL:0002327,8.94e-10,4;CL:0000317,4.72e-09,2;CL:1000448,4.72e-09,2;CL:0002308,4.72e-09,2;CL:0002140,4.72e-09,2;CL:0000312,3.27e-08,5;CL:0000575,6.10e-08,2;CL:0000622,9.80e-08,5 | |||
|ontology_enrichment_development_v019=CL:0000357;2.58e-11;6!CL:0000114;2.58e-11;6!CL:0000223;5.54e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!3.93e-14!82;UBERON:0000914!2.27e-13!83;UBERON:0002329!2.27e-13!83;UBERON:0003077!2.27e-13!83;UBERON:0003059!2.27e-13!83;UBERON:0007282!2.27e-13!83;UBERON:0009618!2.27e-13!83;UBERON:0007285!2.27e-13!83;UBERON:0004290!6.35e-12!70;UBERON:0003102!1.71e-09!95;UBERON:0002385!1.80e-09!63;UBERON:0001015!1.80e-09!63;UBERON:0000383!1.80e-09!63;UBERON:0001134!1.98e-09!61;UBERON:0002036!1.98e-09!61;UBERON:0003082!1.98e-09!61;UBERON:0000490!2.81e-07!138;UBERON:0001981!3.68e-07!60;UBERON:0007500!3.68e-07!60;UBERON:0004537!3.68e-07!60;UBERON:0006965!3.68e-07!60 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;4.20e-13;3!UBERON:0004815;2.16e-12;3!UBERON:0002031;2.16e-12;3!UBERON:0001911;1.13e-09;4!UBERON:0001708;1.29e-09;4!UBERON:0008895;1.29e-09;4!UBERON:0002419;4.53e-09;2!UBERON:0007771;4.53e-09;2!UBERON:0003297;4.53e-09;2!UBERON:0001821;4.53e-09;2!UBERON:0003487;4.53e-09;2!UBERON:0001820;4.53e-09;2!UBERON:0000486;5.83e-08;12!UBERON:0011159;9.04e-08;5!UBERON:0002185;1.33e-07;5!UBERON:0010371;3.65e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,4.38e-13,3;UBERON:0004815,2.20e-12,3;UBERON:0002031,2.20e-12,3;UBERON:0001911,8.94e-10,4;UBERON:0005333,8.94e-10,4;UBERON:0008425,8.94e-10,4;UBERON:0005311,8.94e-10,4;UBERON:0003102,1.05e-09,99;UBERON:0001708,1.43e-09,4;UBERON:0008895,1.43e-09,4;UBERON:0002419,4.72e-09,2;UBERON:0007771,4.72e-09,2;UBERON:0003297,4.72e-09,2;UBERON:0001821,4.72e-09,2;UBERON:0003487,4.72e-09,2;UBERON:0001820,4.72e-09,2;UBERON:0005089,4.72e-09,2;UBERON:0005088,4.72e-09,2;UBERON:0011159,9.80e-08,5;UBERON:0005157,1.22e-07,47;UBERON:0002185,1.35e-07,5;UBERON:0005153,5.69e-07,37 | |||
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| ||
|short_description=p@chr6:106975193..106975220,+ | |short_description=p@chr6:106975193..106975220,+ | ||
}} | }} |
Latest revision as of 17:59, 30 July 2015
Short description: | p@chr6:106975193..106975220, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:106975193..106975220, + |
Coexpression cluster: | C1740_Keratinocyte_Mammary_Mallassezderived_Gingival_Small_Sebocyte_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 2.00e-26 | 14 |
respiratory epithelial cell | 2.52e-23 | 13 |
endo-epithelial cell | 1.94e-20 | 42 |
ecto-epithelial cell | 4.20e-14 | 34 |
endodermal cell | 9.93e-14 | 58 |
gingival epithelial cell | 4.38e-13 | 3 |
epithelial cell of Malassez | 1.28e-12 | 3 |
embryonic cell | 1.94e-12 | 250 |
bronchial epithelial cell | 2.20e-12 | 3 |
epithelial cell | 1.26e-11 | 253 |
epidermal cell | 2.25e-11 | 9 |
stratified squamous epithelial cell | 2.42e-11 | 6 |
keratin accumulating cell | 2.42e-11 | 6 |
stratified epithelial cell | 2.42e-11 | 6 |
keratinizing barrier epithelial cell | 2.42e-11 | 6 |
epithelial fate stem cell | 2.42e-11 | 6 |
stratified epithelial stem cell | 2.42e-11 | 6 |
surface ectodermal cell | 2.42e-11 | 6 |
epithelial cell of tracheobronchial tree | 1.05e-10 | 9 |
epithelial cell of lower respiratory tract | 1.05e-10 | 9 |
mammary gland epithelial cell | 8.94e-10 | 4 |
sebum secreting cell | 4.72e-09 | 2 |
epithelial cell of sweat gland | 4.72e-09 | 2 |
epithelial cell of skin gland | 4.72e-09 | 2 |
acinar cell of sebaceous gland | 4.72e-09 | 2 |
keratinocyte | 3.27e-08 | 5 |
corneal epithelial cell | 6.10e-08 | 2 |
acinar cell | 9.80e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 4.38e-13 | 3 |
lower respiratory tract epithelium | 2.20e-12 | 3 |
epithelium of bronchus | 2.20e-12 | 3 |
mammary gland | 8.94e-10 | 4 |
mammary bud | 8.94e-10 | 4 |
mammary ridge | 8.94e-10 | 4 |
mammary placode | 8.94e-10 | 4 |
surface structure | 1.05e-09 | 99 |
jaw skeleton | 1.43e-09 | 4 |
splanchnocranium | 1.43e-09 | 4 |
skin gland | 4.72e-09 | 2 |
epidermis gland | 4.72e-09 | 2 |
gland of integumental system | 4.72e-09 | 2 |
sebaceous gland | 4.72e-09 | 2 |
skin sebaceous gland | 4.72e-09 | 2 |
sweat gland | 4.72e-09 | 2 |
sweat gland placode | 4.72e-09 | 2 |
sebaceous gland placode | 4.72e-09 | 2 |
primary subdivision of cranial skeletal system | 9.80e-08 | 5 |
epithelial fold | 1.22e-07 | 47 |
bronchus | 1.35e-07 | 5 |
epithelial bud | 5.69e-07 | 37 |