FFCP PHASE1:Hg19::chr6:24278432..24278446,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr6:24278432..24278446,- | |||
|coexpression_cluster_id=C860 | |||
|description=CAGE_peak_at_chr6:24278432..24278446,- | |||
|id=chr6:24278432..24278446,- | |||
|ontology_enrichment_celltype=CL:1000497!1.42e-16!18;CL:0002518!1.42e-16!18;CL:1000507!3.19e-14!12;CL:1000494!3.19e-14!12;CL:1000449!7.17e-13!16;CL:0002681!1.09e-09!13;CL:0002584!1.09e-09!13;CL:0000066!2.32e-09!254;CL:0002149!1.34e-07!6;CL:0002255!1.34e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:1000507;5.72e-33;10!CL:1000494;5.72e-33;10!CL:1000449;5.05e-22;15!CL:1000497;1.93e-19;17!CL:0002518;1.93e-19;17!CL:0000313;4.72e-15;1!CL:0002681;1.57e-10;12!CL:0002584;1.57e-10;12!CL:0000159;3.56e-08;2!CL:0000650;7.03e-08;2!CL:1000500;7.03e-08;2!CL:1000618;7.03e-08;2!CL:1001318;7.03e-08;2!CL:0002173;7.03e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,5.02e-33,10;CL:1000494,5.02e-33,10;CL:1000449,4.63e-22,15;CL:1000497,1.78e-19,17;CL:0002518,1.78e-19,17;CL:0000313,4.73e-15,1;CL:0002681,1.63e-10,12;CL:0002584,1.63e-10,12;CL:0000159,3.56e-08,2;CL:0000650,9.19e-08,2;CL:1000500,9.19e-08,2;CL:1000618,9.19e-08,2;CL:1001318,9.19e-08,2;CL:0002173,9.19e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:299!7.49e-16!25;DOID:193!3.25e-15!29;DOID:120!4.08e-14!27;DOID:0050687!9.21e-13!143;DOID:305!2.53e-12!106;DOID:14566!6.50e-11!239;DOID:162!1.14e-10!235;DOID:7!1.37e-08!39;DOID:0050686!7.34e-08!137;DOID:3001!1.34e-07!6;DOID:4468!5.63e-07!2;DOID:5093!6.55e-07!4;DOID:1612!6.55e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:2152;4.72e-15;1!DOID:4468;3.95e-08;2!DOID:3193;7.03e-08;2!DOID:962;7.03e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,4.73e-15,1;DOID:4468,3.82e-08,2;DOID:3193,7.52e-08,2;DOID:962,7.52e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0005172!9.20e-18!55;UBERON:0005173!9.20e-18!55;UBERON:0002113!1.96e-16!27;UBERON:0003918!1.96e-16!27;UBERON:0005095!1.96e-16!27;UBERON:0007687!1.96e-16!27;UBERON:0002417!1.96e-15!61;UBERON:0000916!1.96e-15!61;UBERON:0006555!1.29e-14!17;UBERON:0005103!1.29e-14!17;UBERON:0000083!1.29e-14!17;UBERON:0009201!1.29e-14!17;UBERON:0004819!1.29e-14!17;UBERON:0006553!1.29e-14!17;UBERON:0003074!1.29e-14!17;UBERON:0003060!1.29e-14!17;UBERON:0009773!3.19e-14!12;UBERON:0001231!3.19e-14!12;UBERON:0004810!3.19e-14!12;UBERON:0000080!1.12e-13!18;UBERON:0002120!1.12e-13!18;UBERON:0004875!1.12e-13!18;UBERON:0005721!1.12e-13!18;UBERON:0005754!1.12e-13!18;UBERON:0007297!1.12e-13!18;UBERON:0000489!2.58e-13!32;UBERON:0004211!7.17e-13!16;UBERON:0001285!7.17e-13!16;UBERON:0007684!7.17e-13!16;UBERON:0003220!7.17e-13!16;UBERON:0004208!7.17e-13!16;UBERON:0009569!4.19e-12!113;UBERON:0004876!4.39e-12!20;UBERON:0003886!9.81e-12!63;UBERON:0003887!2.11e-11!21;UBERON:0000466!6.00e-11!126;UBERON:0005177!7.10e-11!107;UBERON:0000058!1.64e-10!26;UBERON:0006554!4.22e-10!44;UBERON:0002553!4.62e-10!70;UBERON:0001008!8.49e-10!45;UBERON:0001851!9.77e-10!16;UBERON:0001225!1.09e-09!13;UBERON:0008987!1.09e-09!13;UBERON:0000464!2.19e-08!104;UBERON:0003064!6.06e-08!37;UBERON:0000353!3.88e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;5.72e-33;10!UBERON:0009773;5.72e-33;10!UBERON:0001231;5.72e-33;10!UBERON:0004810;5.72e-33;10!UBERON:0006555;5.05e-22;15!UBERON:0004819;5.05e-22;15!UBERON:0001285;5.05e-22;15!UBERON:0007684;5.05e-22;15!UBERON:0004911;4.72e-15;1!UBERON:0002113;8.80e-14;24!UBERON:0011143;8.80e-14;24!UBERON:0000489;2.10e-11;29!UBERON:0006554;5.06e-11;30!UBERON:0001008;5.06e-11;30!UBERON:0001225;1.57e-10;12!UBERON:0008987;1.57e-10;12!UBERON:0001851;1.56e-08;15!UBERON:0000353;1.56e-08;15!UBERON:0004909;3.56e-08;2!UBERON:0005172;6.66e-08;52!UBERON:0005173;6.66e-08;52!UBERON:0003714;7.03e-08;2!UBERON:0003567;7.03e-08;2!UBERON:0003838;7.03e-08;2!UBERON:0003586;7.03e-08;2!UBERON:0005169;7.03e-08;2!UBERON:0002321;7.03e-08;2!UBERON:0005215;7.03e-08;2!UBERON:0002303;7.03e-08;2!UBERON:0002319;7.03e-08;2!UBERON:0002417;2.40e-07;58!UBERON:0000916;2.40e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,5.02e-33,10;UBERON:0004211,4.63e-22,15;UBERON:0009773,4.63e-22,15;UBERON:0001231,4.63e-22,15;UBERON:0001285,4.63e-22,15;UBERON:0007684,4.63e-22,15;UBERON:0004208,4.63e-22,15;UBERON:0006555,1.09e-20,16;UBERON:0004819,1.09e-20,16;UBERON:0004911,4.73e-15,1;UBERON:0002113,9.62e-13,26;UBERON:0003918,9.62e-13,26;UBERON:0011143,9.62e-13,26;UBERON:0005095,9.62e-13,26;UBERON:0007687,9.62e-13,26;UBERON:0005172,1.91e-11,54;UBERON:0005173,1.91e-11,54;UBERON:0000489,1.10e-10,31;UBERON:0001225,1.63e-10,12;UBERON:0008987,1.63e-10,12;UBERON:0002417,3.02e-10,60;UBERON:0000916,3.02e-10,60;UBERON:0001851,1.60e-08,15;UBERON:0000353,1.60e-08,15;UBERON:0004909,3.56e-08,2;UBERON:0003714,7.52e-08,2;UBERON:0003567,9.19e-08,2;UBERON:0003838,9.19e-08,2;UBERON:0003586,9.19e-08,2;UBERON:0005169,9.19e-08,2;UBERON:0002321,9.19e-08,2;UBERON:0005215,9.19e-08,2;UBERON:0002303,9.19e-08,2;UBERON:0002319,9.19e-08,2;UBERON:0006554,5.07e-07,47;UBERON:0001008,7.14e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,1.80479845162965,2.00239876471478,0,1.46139224653261,2.00548094896464,0,0,0.431831832204279,0,0.541892875087706,1.00337954770971,0.254876273045038,0,0.671624264166535,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0.994147647766298,0,0.556543525114529,0,0,0,0,0.503865495708552,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0.520855522170466,0,0,0,0,0,0,0.583209226766509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,4.43095935508857,0.816164040795739,0.565412285735763,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0.242780379534093,0,1.20990716048664,0,0,0,0,0,0,0,0,0.569219092059585,0,0.867798691675654,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0,0.195551382734803,0,0.213452994739353,0,0.432271251462318,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0.859530882839914,0,0,0,0,0,0,0,0,0,1.16495949527454,0.551482276150566,1.07140615895516,0.876246070104404,0.0984274815147488,0,0.795229689809303,0,0,0,0,0,0,0,0,0.472834243795189,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0.342173675768659,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0.155262956876259,0,0,0.521745061811734,0,0,0,0,0.537052785212442,0,0.398095888698616,0,0,0,0,0,0,0,0,1.389134845943,0,0,0,0,0.706756583783524,0,0,4.35610581599509,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0.509197589862076,0,2.72658681369805,1.11728983594649,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0,0.215927591218621,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0.68732060563215,0.31020638566432,0,6.93503677146312,0,0,0,0,0,0,0,0,0,0.22589216407792,0,0.301925687133347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,0,0,0,0,0.672791175483681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr6:24278432..24278446,- | |||
}} |
Latest revision as of 22:43, 30 July 2015
Short description: | p@chr6:24278432..24278446, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:24278432..24278446, - |
Coexpression cluster: | C860_serous_mesothelioma_Renal_clear_colon_endometrial_hepatoblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 5.02e-33 | 10 |
nephron tubule epithelial cell | 5.02e-33 | 10 |
epithelial cell of nephron | 4.63e-22 | 15 |
kidney cell | 1.78e-19 | 17 |
kidney epithelial cell | 1.78e-19 | 17 |
serous secreting cell | 4.73e-15 | 1 |
kidney cortical cell | 1.63e-10 | 12 |
renal cortical epithelial cell | 1.63e-10 | 12 |
seromucus secreting cell | 3.56e-08 | 2 |
mesangial cell | 9.19e-08 | 2 |
kidney interstitial cell | 9.19e-08 | 2 |
juxtaglomerular complex cell | 9.19e-08 | 2 |
renal interstitial pericyte | 9.19e-08 | 2 |
extraglomerular mesangial cell | 9.19e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 4.73e-15 | 1 |
clear cell adenocarcinoma | 3.82e-08 | 2 |
peripheral nerve sheath neoplasm | 7.52e-08 | 2 |
neurofibroma | 7.52e-08 | 2 |