FFCP PHASE1:Mm9::chr9:120088834..120088845,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=503|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr9:120088834..120088845,+|id=chr9:120088834..120088845,+|ontology_enrichment_celltype=CL:0000117!2.28e-12!23;CL:0000337!2.28e-12!23;CL:0002610!2.91e-11!3;CL:0002614!6.18e-11!3;CL:0000540!4.62e-08!33;CL:0000047!4.62e-08!33;CL:0000031!4.62e-08!33;CL:0000404!4.62e-08!33;CL:0002611!5.30e-07!2|ontology_enrichment_celltype_v019_2=CL:0002610,1.46e-25,3;CL:0002614,9.40e-25,3;CL:0000117,5.55e-17,23;CL:0000337,5.55e-17,23;CL:0000540,9.76e-12,33;CL:0000047,9.76e-12,33;CL:0000031,9.76e-12,33;CL:0000404,9.76e-12,33;CL:0000393,7.15e-10,39;CL:0000211,7.15e-10,39;CL:0002319,6.48e-09,43;CL:0000221,1.06e-08,44;CL:0000133,1.06e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!8.05e-25!52;UBERON:0005068!8.05e-25!52;UBERON:0006241!8.05e-25!52;UBERON:0007135!8.05e-25!52;UBERON:0001017!1.13e-24!73;UBERON:0005743!1.13e-24!73;UBERON:0000955!2.67e-24!50;UBERON:0006238!2.67e-24!50;UBERON:0000073!6.91e-24!75;UBERON:0001016!6.91e-24!75;UBERON:0002616!1.88e-22!49;UBERON:0000033!2.48e-20!63;UBERON:0002298!3.51e-19!6;UBERON:0003076!6.08e-19!12;UBERON:0003057!6.08e-19!12;UBERON:0002346!9.08e-19!71;UBERON:0003075!9.08e-19!71;UBERON:0007284!9.08e-19!71;UBERON:0004121!8.72e-18!102;UBERON:0000924!8.72e-18!102;UBERON:0006601!8.72e-18!102;UBERON:0002020!3.03e-15!34;UBERON:0007811!1.06e-13!86;UBERON:0002950!1.96e-13!4;UBERON:0001891!1.96e-13!4;UBERON:0009616!1.96e-13!4;UBERON:0000153!3.75e-12!94;UBERON:0002240!4.76e-12!6;UBERON:0005174!4.76e-12!6;UBERON:0001137!4.76e-12!6;UBERON:0004684!2.91e-11!3;UBERON:0002275!2.91e-11!3;UBERON:0002038!6.18e-11!3;UBERON:0002308!6.18e-11!3;UBERON:0009663!6.18e-11!3;UBERON:0009661!6.18e-11!3;UBERON:0006331!6.18e-11!3;UBERON:0000125!6.18e-11!3;UBERON:0003080!6.30e-11!40;UBERON:0002021!6.70e-11!10;UBERON:0000411!6.70e-11!10;UBERON:0001950!6.70e-11!10;UBERON:0003056!7.43e-10!49;UBERON:0002780!1.42e-09!39;UBERON:0001890!1.42e-09!39;UBERON:0006240!1.42e-09!39;UBERON:0001948!1.56e-09!5;UBERON:0002315!1.56e-09!5;UBERON:0002791!2.50e-09!29;UBERON:0003528!2.50e-09!29;UBERON:0001893!2.50e-09!29;UBERON:0000025!6.52e-09!114;UBERON:0004733!1.44e-08!6;UBERON:0004732!1.44e-08!6;UBERON:0002028!1.44e-08!6;UBERON:0007277!1.44e-08!6;UBERON:0004111!4.91e-08!122;UBERON:0001896!2.25e-07!2;UBERON:0005290!2.25e-07!2;UBERON:0010096!2.25e-07!2;UBERON:0002256!5.30e-07!2|ontology_enrichment_uberon_v019_2=UBERON:0004684,1.46e-25,3;UBERON:0002275,1.46e-25,3;UBERON:0002038,9.40e-25,3;UBERON:0009663,9.40e-25,3;UBERON:0009661,9.40e-25,3;UBERON:0000125,9.40e-25,3;UBERON:0002308,9.40e-25,3;UBERON:0002950,9.44e-19,4;UBERON:0001891,9.44e-19,4;UBERON:0009616,9.44e-19,4;UBERON:0010286,9.44e-19,4;UBERON:0000073,3.06e-14,54;UBERON:0001017,2.39e-10,73;UBERON:0001016,4.73e-10,75;UBERON:0002420,1.08e-09,8;UBERON:0007245,1.08e-09,8;UBERON:0010009,1.08e-09,8;UBERON:0010011,1.08e-09,8;UBERON:0000454,1.08e-09,8;UBERON:0001851,6.33e-09,1;UBERON:0005889,6.33e-09,1;UBERON:0004121,9.14e-08,95;UBERON:0000924,9.14e-08,95;UBERON:0006601,9.14e-08,95;UBERON:0001049,4.15e-07,52;UBERON:0005068,4.15e-07,52;UBERON:0006241,4.15e-07,52;UBERON:0007135,4.15e-07,52|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14260393761521,0.220868540951614,0,0,0,4.40463523997555,4.59674417106676,6.45147439676223,0,0,0,3.07101298901519,1.68828783009504,4.27835093775068,0.294628585473668,0.142371680799103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.585561594023094,0.41889341362691,0,0,0,0,0.299581278809645,0,0,0.347648640384553,1.02286182932132,0.83115217823824,1.1356888414743,0,0,0,0,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,2.34423373184406,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,1.14579102687879,0.515559547031063,0,0,0.675022500231806,0,0.906284817968409,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr9:120088834..120088845,+}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=503 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr9:120088834..120088845,+ | |||
|description=CAGE_peak_at_chr9:120088834..120088845,+ | |||
|id=chr9:120088834..120088845,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.28e-12!23;CL:0000337!2.28e-12!23;CL:0002610!2.91e-11!3;CL:0002614!6.18e-11!3;CL:0000540!4.62e-08!33;CL:0000047!4.62e-08!33;CL:0000031!4.62e-08!33;CL:0000404!4.62e-08!33;CL:0002611!5.30e-07!2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,1.46e-25,3;CL:0002614,9.40e-25,3;CL:0000117,5.55e-17,23;CL:0000337,5.55e-17,23;CL:0000540,9.76e-12,33;CL:0000047,9.76e-12,33;CL:0000031,9.76e-12,33;CL:0000404,9.76e-12,33;CL:0000393,7.15e-10,39;CL:0000211,7.15e-10,39;CL:0002319,6.48e-09,43;CL:0000221,1.06e-08,44;CL:0000133,1.06e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!8.05e-25!52;UBERON:0005068!8.05e-25!52;UBERON:0006241!8.05e-25!52;UBERON:0007135!8.05e-25!52;UBERON:0001017!1.13e-24!73;UBERON:0005743!1.13e-24!73;UBERON:0000955!2.67e-24!50;UBERON:0006238!2.67e-24!50;UBERON:0000073!6.91e-24!75;UBERON:0001016!6.91e-24!75;UBERON:0002616!1.88e-22!49;UBERON:0000033!2.48e-20!63;UBERON:0002298!3.51e-19!6;UBERON:0003076!6.08e-19!12;UBERON:0003057!6.08e-19!12;UBERON:0002346!9.08e-19!71;UBERON:0003075!9.08e-19!71;UBERON:0007284!9.08e-19!71;UBERON:0004121!8.72e-18!102;UBERON:0000924!8.72e-18!102;UBERON:0006601!8.72e-18!102;UBERON:0002020!3.03e-15!34;UBERON:0007811!1.06e-13!86;UBERON:0002950!1.96e-13!4;UBERON:0001891!1.96e-13!4;UBERON:0009616!1.96e-13!4;UBERON:0000153!3.75e-12!94;UBERON:0002240!4.76e-12!6;UBERON:0005174!4.76e-12!6;UBERON:0001137!4.76e-12!6;UBERON:0004684!2.91e-11!3;UBERON:0002275!2.91e-11!3;UBERON:0002038!6.18e-11!3;UBERON:0002308!6.18e-11!3;UBERON:0009663!6.18e-11!3;UBERON:0009661!6.18e-11!3;UBERON:0006331!6.18e-11!3;UBERON:0000125!6.18e-11!3;UBERON:0003080!6.30e-11!40;UBERON:0002021!6.70e-11!10;UBERON:0000411!6.70e-11!10;UBERON:0001950!6.70e-11!10;UBERON:0003056!7.43e-10!49;UBERON:0002780!1.42e-09!39;UBERON:0001890!1.42e-09!39;UBERON:0006240!1.42e-09!39;UBERON:0001948!1.56e-09!5;UBERON:0002315!1.56e-09!5;UBERON:0002791!2.50e-09!29;UBERON:0003528!2.50e-09!29;UBERON:0001893!2.50e-09!29;UBERON:0000025!6.52e-09!114;UBERON:0004733!1.44e-08!6;UBERON:0004732!1.44e-08!6;UBERON:0002028!1.44e-08!6;UBERON:0007277!1.44e-08!6;UBERON:0004111!4.91e-08!122;UBERON:0001896!2.25e-07!2;UBERON:0005290!2.25e-07!2;UBERON:0010096!2.25e-07!2;UBERON:0002256!5.30e-07!2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,1.46e-25,3;UBERON:0002275,1.46e-25,3;UBERON:0002038,9.40e-25,3;UBERON:0009663,9.40e-25,3;UBERON:0009661,9.40e-25,3;UBERON:0000125,9.40e-25,3;UBERON:0002308,9.40e-25,3;UBERON:0002950,9.44e-19,4;UBERON:0001891,9.44e-19,4;UBERON:0009616,9.44e-19,4;UBERON:0010286,9.44e-19,4;UBERON:0000073,3.06e-14,54;UBERON:0001017,2.39e-10,73;UBERON:0001016,4.73e-10,75;UBERON:0002420,1.08e-09,8;UBERON:0007245,1.08e-09,8;UBERON:0010009,1.08e-09,8;UBERON:0010011,1.08e-09,8;UBERON:0000454,1.08e-09,8;UBERON:0001851,6.33e-09,1;UBERON:0005889,6.33e-09,1;UBERON:0004121,9.14e-08,95;UBERON:0000924,9.14e-08,95;UBERON:0006601,9.14e-08,95;UBERON:0001049,4.15e-07,52;UBERON:0005068,4.15e-07,52;UBERON:0006241,4.15e-07,52;UBERON:0007135,4.15e-07,52 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14260393761521,0.220868540951614,0,0,0,4.40463523997555,4.59674417106676,6.45147439676223,0,0,0,3.07101298901519,1.68828783009504,4.27835093775068,0.294628585473668,0.142371680799103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.585561594023094,0.41889341362691,0,0,0,0,0.299581278809645,0,0,0.347648640384553,1.02286182932132,0.83115217823824,1.1356888414743,0,0,0,0,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,2.34423373184406,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,1.14579102687879,0.515559547031063,0,0,0.675022500231806,0,0.906284817968409,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr9:120088834..120088845,+ | |||
}} |
Latest revision as of 18:00, 4 August 2015
Short description: | p@chr9:120088834..120088845, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:120088834..120088845, + |
Coexpression cluster: | MCL_coexpression_mm9:503 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 1.46e-25 | 3 |
neuron of the substantia nigra | 9.40e-25 | 3 |
CNS neuron (sensu Vertebrata) | 5.55e-17 | 23 |
neuroblast (sensu Vertebrata) | 5.55e-17 | 23 |
neuron | 9.76e-12 | 33 |
neuronal stem cell | 9.76e-12 | 33 |
neuroblast | 9.76e-12 | 33 |
electrically signaling cell | 9.76e-12 | 33 |
electrically responsive cell | 7.15e-10 | 39 |
electrically active cell | 7.15e-10 | 39 |
neural cell | 6.48e-09 | 43 |
ectodermal cell | 1.06e-08 | 44 |
neurectodermal cell | 1.06e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 1.46e-25 | 3 |
reticular formation | 1.46e-25 | 3 |
substantia nigra | 9.40e-25 | 3 |
telencephalic nucleus | 9.40e-25 | 3 |
midbrain nucleus | 9.40e-25 | 3 |
neural nucleus | 9.40e-25 | 3 |
nucleus of brain | 9.40e-25 | 3 |
regional part of midbrain | 9.44e-19 | 4 |
midbrain | 9.44e-19 | 4 |
presumptive midbrain | 9.44e-19 | 4 |
midbrain neural tube | 9.44e-19 | 4 |
regional part of nervous system | 3.06e-14 | 54 |
central nervous system | 2.39e-10 | 73 |
nervous system | 4.73e-10 | 75 |
basal ganglion | 1.08e-09 | 8 |
nuclear complex of neuraxis | 1.08e-09 | 8 |
aggregate regional part of brain | 1.08e-09 | 8 |
collection of basal ganglia | 1.08e-09 | 8 |
cerebral subcortex | 1.08e-09 | 8 |
cortex | 6.33e-09 | 1 |
zygote cortex | 6.33e-09 | 1 |
ectoderm-derived structure | 9.14e-08 | 95 |
ectoderm | 9.14e-08 | 95 |
presumptive ectoderm | 9.14e-08 | 95 |
neural tube | 4.15e-07 | 52 |
neural rod | 4.15e-07 | 52 |
future spinal cord | 4.15e-07 | 52 |
neural keel | 4.15e-07 | 52 |