FFCP PHASE1:Mm9::chr3:116415378..116415428,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=229782|HGNC=|MCL_coexpression_id=12|UniProt=Q8R1T4|association_with_transcript=139bp_to_ENSMUST00000029569_5end|description=CAGE_peak_3_at_Slc35a3_5end|id=chr3:116415378..116415428,-|ontology_enrichment_celltype=CL:0002563!4.84e-07!9;CL:0002251!4.84e-07!9;CL:0000066!6.94e-07!25|ontology_enrichment_celltype_v019_2=CL:0002563,7.50e-10,9;CL:0002251,7.50e-10,9;CL:0000066,2.48e-09,25;CL:0000075,7.82e-08,7;CL:0000239,1.43e-07,6;CL:0000677,1.43e-07,6;CL:0000584,1.43e-07,6;CL:0000223,4.99e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!1.58e-15!43;UBERON:0005409!3.21e-14!59;UBERON:0000344!3.27e-11!15;UBERON:0004119!1.12e-10!130;UBERON:0000925!1.12e-10!130;UBERON:0006595!1.12e-10!130;UBERON:0001007!1.62e-10!128;UBERON:0001555!1.62e-10!128;UBERON:0007026!1.62e-10!128;UBERON:0002365!2.90e-10!25;UBERON:0002330!2.90e-10!25;UBERON:0009854!3.54e-10!23;UBERON:0009856!3.54e-10!23;UBERON:0001242!6.87e-10!13;UBERON:0000060!6.87e-10!13;UBERON:0001262!6.87e-10!13;UBERON:0004786!6.87e-10!13;UBERON:0002107!9.82e-10!22;UBERON:0007499!9.82e-10!22;UBERON:0006925!9.82e-10!22;UBERON:0009497!9.82e-10!22;UBERON:0000015!9.82e-10!22;UBERON:0002423!9.82e-10!22;UBERON:0006235!9.82e-10!22;UBERON:0008835!9.82e-10!22;UBERON:0003894!9.82e-10!22;UBERON:0004161!9.82e-10!22;UBERON:0008836!9.82e-10!22;UBERON:0004921!1.33e-09!126;UBERON:0004185!1.33e-09!126;UBERON:0005172!1.89e-07!49;UBERON:0005173!1.89e-07!49;UBERON:0002417!1.89e-07!49;UBERON:0000916!1.89e-07!49;UBERON:0003350!4.84e-07!9;UBERON:0004808!4.84e-07!9;UBERON:0001277!4.84e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.13e-24,31;UBERON:0005409,2.35e-23,47;UBERON:0001007,2.89e-16,116;UBERON:0001555,2.89e-16,116;UBERON:0007026,2.89e-16,116;UBERON:0000344,3.84e-16,15;UBERON:0004119,1.18e-15,118;UBERON:0000925,1.18e-15,118;UBERON:0006595,1.18e-15,118;UBERON:0004921,8.09e-15,114;UBERON:0001242,3.82e-14,13;UBERON:0001262,3.82e-14,13;UBERON:0004786,3.82e-14,13;UBERON:0009854,5.76e-11,23;UBERON:0009856,5.76e-11,23;UBERON:0002365,1.64e-10,25;UBERON:0002330,1.64e-10,25;UBERON:0002107,2.50e-10,22;UBERON:0007499,2.50e-10,22;UBERON:0006925,2.50e-10,22;UBERON:0009497,2.50e-10,22;UBERON:0000015,2.50e-10,22;UBERON:0002423,2.50e-10,22;UBERON:0006235,2.50e-10,22;UBERON:0008835,2.50e-10,22;UBERON:0003894,2.50e-10,22;UBERON:0004161,2.50e-10,22;UBERON:0008836,2.50e-10,22;UBERON:0003350,7.50e-10,9;UBERON:0004808,7.50e-10,9;UBERON:0001277,7.50e-10,9;UBERON:0004923,5.31e-09,24;UBERON:0000485,6.44e-09,11;UBERON:0005172,3.87e-07,49;UBERON:0005173,3.87e-07,49;UBERON:0002417,3.87e-07,49;UBERON:0000916,3.87e-07,49;UBERON:0003929,4.08e-07,55|phase1_expression=0.160148847104794,85.8479502792828,88.7248516809595,103.140296055629,127.728411136319,39.9552667150298,41.5830500260036,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,2.55129870453209,0.198581902401771,0,56.3173328232792,57.3523202667925,78.6697790837578,70.6449673700883,67.0115533653115,87.410772949932,108.62498592653,60.5324294088982,0,0,0,31.1959749331377,26.0988393212833,25.3170001765338,0,0,0,0,0,0.485510353031154,0.377690453926732,0.202753862439029,0.183546752161682,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,0,0.633831403506179,0,0,0,0,0,0,0,0.311068836925433,0,0,0,0.220868540951614,0,0,0,0,0.127687338085188,0.307213066512487,0.263772575460388,0.365950574409639,0.52091337055676,0,0,0,0.589257170947335,0.284743361598206,0,0.151452386666368,0,0.579728977403356,25.8127163094416,20.3991400112325,41.0174425644741,48.0834548911275,44.8026887097336,17.2746636762055,0,0.519572009205738,0,1.69012103732017,0,0,0,0.216491041011214,0,0.505524445014783,30.7154636444271,0,0.148442139064825,0.346970653532272,1.21786191324856,0.230615497256059,0.150722640552623,0.23517741427141,0.502666365318702,2.22475470960936,0.144599356919912,0,0,0,0,14.9113408974498,0,0.628340120440365,57.7332944771417,0.239630249011841,0,0,0,0,0.251308704225729,0.173824320192276,0.511430914660661,0,0.162241263067758,0.509196819251581,0.373220911830279,1.0108910337347,3.15662783829711,0,0.459804208866946,0.180062129805349,0,0.204109497453984,0.12811372028485,0.187403449119458,2.84573707812917,0,0,0,0,0,0.348252166522167,0,0.59710280045548,0,0.257347907114715,0,0.207125772535502,0.703578179943289,0.180062061461015,0,0,0,0,0.268273401399619,0.233530684734339,0,0,0.162137619091711,0.146199987425332,0.219550115291051,0.402619256281115,0.210289948564127,0.205809224758569,131.506675627552,53.6834650326995,0.213288250535234,0.464473343720877,1.67527699718721,8.87407508342707,8.45036566610507,16.1691782195675,46.5038480313621,26.3518327558417,21.8661631656234,15.5186048192098,19.1064805376738,52.1315257019448,46.0374046233099,56.1578390577316,0.379335801906163,0.456994050438915,0,1.62921062276251,2.32742984601151,2.03393877681924,7.96780367765642,18.5988786454299,20.5668333472201,28.5047448659359,49.2111360964667,0.667380422864376,0.393117990226406,1.34917267430912,0.811440485554012,2.41177159752417,3.05551022137704,2.01387296215567,3.40483976227574,10.4333337011471,17.2521847832825,16.0020607497456,20.9065240986756,35.3610429125956,34.803098223251,32.3237159313456,0.369506380333209,0,0.162964976442026,0,0,0,0,0.390267295715598,0,0.44292937929755,0.318909537314974,0.163863314715738,0,0.144649058581512,0,0,0.491764273019036,1.37968373152366,0,0,0,0,0,0,0,0.238968797952552,0.445597348164788,0,0,0,0,0,0.141940085208269,0.35613120733451,0.325773918707152,0.164970122972535,1.32745138339963,0,0,0,0.295301892880773,0.614870295887855,3.6179961043551,0.727067458955011,0.712994756769443,0.632073515871632,1.05418608574999,1.03135543248187,1.02131881726136,0.36012218806262,0.129358683782755,0.643011105094777,0,0.178368817602071,0.493647061806363,0.304464949114599,0.23467170806371,0.63549621259146,3.74898276693435,0,0,0,0.119372344003136,0.656563598980245,39.0584321084,0,0,0,0,0,0,0,0.169978429993855,0,0,11.4560474161814,0.158167996790568,1.42323626988794,1.83609079397062,2.50905955217362,5.24070152990826,4.04593039154462,7.02554373665355,8.11443420150492,32.0148984030728,3.10669656543463,0,0,0,0.194451188344048,0.129159823477731,0.168956125490778,0.117357238645754,0.39061315453185,0.209718688851422,0,0.288030006257865,0,0.202725215290164,0,0.25984164595559,0,0.198681354781265,0,0,0,0.15241361331,0,0,0,0.116876902181569,0.226730383615211,0.221985953374065,0.0897138566094757,0.167884616364078,0.19318959403219,0,0.549454872801795,0.214368379079066,2.00628841614145,0,0,0.572895513439397,0,0.685082519770642,0,0,0,0,0,0,0,0.512200817262403,0.243106717068294,0.419226325255965,0.551530525350042,0.888986911206461,1.44224540067226,1.28367683836726,2.77966932940177,0,0.565879024158229,0.936415074698824,1.15245274328765,0.861532034334199,2.38146845641537,0.811190281613988,1.15745532278223,2.47251540481984,1.61918812147837,0,1.24233064311536,1.66905332963125,1.16277133305863,1.31753132581463,1.09998990259179,1.64635175585495,1.05227884575137,1.7654534799962,1.68342681497322,1.06771516311757,0.788035859004508,2.04615521584845,0.929621047115796,0.578719832943424,0.249810577937946,1.87145286756327,1.71896843238639,0.191288332068843,0.220591419119515,0.695603506861264|short_description=p3@Slc35a3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:229782 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8R1T4 | |||
|association_with_transcript=139bp_to_ENSMUST00000029569_5end | |||
|cluster_id=chr3:116415378..116415428,- | |||
|description=CAGE_peak_3_at_Slc35a3_5end | |||
|id=chr3:116415378..116415428,- | |||
|ontology_enrichment_celltype=CL:0002563!4.84e-07!9;CL:0002251!4.84e-07!9;CL:0000066!6.94e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,7.50e-10,9;CL:0002251,7.50e-10,9;CL:0000066,2.48e-09,25;CL:0000075,7.82e-08,7;CL:0000239,1.43e-07,6;CL:0000677,1.43e-07,6;CL:0000584,1.43e-07,6;CL:0000223,4.99e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.58e-15!43;UBERON:0005409!3.21e-14!59;UBERON:0000344!3.27e-11!15;UBERON:0004119!1.12e-10!130;UBERON:0000925!1.12e-10!130;UBERON:0006595!1.12e-10!130;UBERON:0001007!1.62e-10!128;UBERON:0001555!1.62e-10!128;UBERON:0007026!1.62e-10!128;UBERON:0002365!2.90e-10!25;UBERON:0002330!2.90e-10!25;UBERON:0009854!3.54e-10!23;UBERON:0009856!3.54e-10!23;UBERON:0001242!6.87e-10!13;UBERON:0000060!6.87e-10!13;UBERON:0001262!6.87e-10!13;UBERON:0004786!6.87e-10!13;UBERON:0002107!9.82e-10!22;UBERON:0007499!9.82e-10!22;UBERON:0006925!9.82e-10!22;UBERON:0009497!9.82e-10!22;UBERON:0000015!9.82e-10!22;UBERON:0002423!9.82e-10!22;UBERON:0006235!9.82e-10!22;UBERON:0008835!9.82e-10!22;UBERON:0003894!9.82e-10!22;UBERON:0004161!9.82e-10!22;UBERON:0008836!9.82e-10!22;UBERON:0004921!1.33e-09!126;UBERON:0004185!1.33e-09!126;UBERON:0005172!1.89e-07!49;UBERON:0005173!1.89e-07!49;UBERON:0002417!1.89e-07!49;UBERON:0000916!1.89e-07!49;UBERON:0003350!4.84e-07!9;UBERON:0004808!4.84e-07!9;UBERON:0001277!4.84e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.13e-24,31;UBERON:0005409,2.35e-23,47;UBERON:0001007,2.89e-16,116;UBERON:0001555,2.89e-16,116;UBERON:0007026,2.89e-16,116;UBERON:0000344,3.84e-16,15;UBERON:0004119,1.18e-15,118;UBERON:0000925,1.18e-15,118;UBERON:0006595,1.18e-15,118;UBERON:0004921,8.09e-15,114;UBERON:0001242,3.82e-14,13;UBERON:0001262,3.82e-14,13;UBERON:0004786,3.82e-14,13;UBERON:0009854,5.76e-11,23;UBERON:0009856,5.76e-11,23;UBERON:0002365,1.64e-10,25;UBERON:0002330,1.64e-10,25;UBERON:0002107,2.50e-10,22;UBERON:0007499,2.50e-10,22;UBERON:0006925,2.50e-10,22;UBERON:0009497,2.50e-10,22;UBERON:0000015,2.50e-10,22;UBERON:0002423,2.50e-10,22;UBERON:0006235,2.50e-10,22;UBERON:0008835,2.50e-10,22;UBERON:0003894,2.50e-10,22;UBERON:0004161,2.50e-10,22;UBERON:0008836,2.50e-10,22;UBERON:0003350,7.50e-10,9;UBERON:0004808,7.50e-10,9;UBERON:0001277,7.50e-10,9;UBERON:0004923,5.31e-09,24;UBERON:0000485,6.44e-09,11;UBERON:0005172,3.87e-07,49;UBERON:0005173,3.87e-07,49;UBERON:0002417,3.87e-07,49;UBERON:0000916,3.87e-07,49;UBERON:0003929,4.08e-07,55 | |||
|phase1_expression=0.160148847104794,85.8479502792828,88.7248516809595,103.140296055629,127.728411136319,39.9552667150298,41.5830500260036,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,2.55129870453209,0.198581902401771,0,56.3173328232792,57.3523202667925,78.6697790837578,70.6449673700883,67.0115533653115,87.410772949932,108.62498592653,60.5324294088982,0,0,0,31.1959749331377,26.0988393212833,25.3170001765338,0,0,0,0,0,0.485510353031154,0.377690453926732,0.202753862439029,0.183546752161682,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,0,0.633831403506179,0,0,0,0,0,0,0,0.311068836925433,0,0,0,0.220868540951614,0,0,0,0,0.127687338085188,0.307213066512487,0.263772575460388,0.365950574409639,0.52091337055676,0,0,0,0.589257170947335,0.284743361598206,0,0.151452386666368,0,0.579728977403356,25.8127163094416,20.3991400112325,41.0174425644741,48.0834548911275,44.8026887097336,17.2746636762055,0,0.519572009205738,0,1.69012103732017,0,0,0,0.216491041011214,0,0.505524445014783,30.7154636444271,0,0.148442139064825,0.346970653532272,1.21786191324856,0.230615497256059,0.150722640552623,0.23517741427141,0.502666365318702,2.22475470960936,0.144599356919912,0,0,0,0,14.9113408974498,0,0.628340120440365,57.7332944771417,0.239630249011841,0,0,0,0,0.251308704225729,0.173824320192276,0.511430914660661,0,0.162241263067758,0.509196819251581,0.373220911830279,1.0108910337347,3.15662783829711,0,0.459804208866946,0.180062129805349,0,0.204109497453984,0.12811372028485,0.187403449119458,2.84573707812917,0,0,0,0,0,0.348252166522167,0,0.59710280045548,0,0.257347907114715,0,0.207125772535502,0.703578179943289,0.180062061461015,0,0,0,0,0.268273401399619,0.233530684734339,0,0,0.162137619091711,0.146199987425332,0.219550115291051,0.402619256281115,0.210289948564127,0.205809224758569,131.506675627552,53.6834650326995,0.213288250535234,0.464473343720877,1.67527699718721,8.87407508342707,8.45036566610507,16.1691782195675,46.5038480313621,26.3518327558417,21.8661631656234,15.5186048192098,19.1064805376738,52.1315257019448,46.0374046233099,56.1578390577316,0.379335801906163,0.456994050438915,0,1.62921062276251,2.32742984601151,2.03393877681924,7.96780367765642,18.5988786454299,20.5668333472201,28.5047448659359,49.2111360964667,0.667380422864376,0.393117990226406,1.34917267430912,0.811440485554012,2.41177159752417,3.05551022137704,2.01387296215567,3.40483976227574,10.4333337011471,17.2521847832825,16.0020607497456,20.9065240986756,35.3610429125956,34.803098223251,32.3237159313456,0.369506380333209,0,0.162964976442026,0,0,0,0,0.390267295715598,0,0.44292937929755,0.318909537314974,0.163863314715738,0,0.144649058581512,0,0,0.491764273019036,1.37968373152366,0,0,0,0,0,0,0,0.238968797952552,0.445597348164788,0,0,0,0,0,0.141940085208269,0.35613120733451,0.325773918707152,0.164970122972535,1.32745138339963,0,0,0,0.295301892880773,0.614870295887855,3.6179961043551,0.727067458955011,0.712994756769443,0.632073515871632,1.05418608574999,1.03135543248187,1.02131881726136,0.36012218806262,0.129358683782755,0.643011105094777,0,0.178368817602071,0.493647061806363,0.304464949114599,0.23467170806371,0.63549621259146,3.74898276693435,0,0,0,0.119372344003136,0.656563598980245,39.0584321084,0,0,0,0,0,0,0,0.169978429993855,0,0,11.4560474161814,0.158167996790568,1.42323626988794,1.83609079397062,2.50905955217362,5.24070152990826,4.04593039154462,7.02554373665355,8.11443420150492,32.0148984030728,3.10669656543463,0,0,0,0.194451188344048,0.129159823477731,0.168956125490778,0.117357238645754,0.39061315453185,0.209718688851422,0,0.288030006257865,0,0.202725215290164,0,0.25984164595559,0,0.198681354781265,0,0,0,0.15241361331,0,0,0,0.116876902181569,0.226730383615211,0.221985953374065,0.0897138566094757,0.167884616364078,0.19318959403219,0,0.549454872801795,0.214368379079066,2.00628841614145,0,0,0.572895513439397,0,0.685082519770642,0,0,0,0,0,0,0,0.512200817262403,0.243106717068294,0.419226325255965,0.551530525350042,0.888986911206461,1.44224540067226,1.28367683836726,2.77966932940177,0,0.565879024158229,0.936415074698824,1.15245274328765,0.861532034334199,2.38146845641537,0.811190281613988,1.15745532278223,2.47251540481984,1.61918812147837,0,1.24233064311536,1.66905332963125,1.16277133305863,1.31753132581463,1.09998990259179,1.64635175585495,1.05227884575137,1.7654534799962,1.68342681497322,1.06771516311757,0.788035859004508,2.04615521584845,0.929621047115796,0.578719832943424,0.249810577937946,1.87145286756327,1.71896843238639,0.191288332068843,0.220591419119515,0.695603506861264 | |||
|short_description=p3@Slc35a3 | |||
}} |
Revision as of 22:15, 5 August 2015
Short description: | p3@Slc35a3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Slc35a3_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 139bp_to_ENSMUST00000029569_5end |
EntrezGene: | 229782 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 7.50e-10 | 9 |
epithelial cell of alimentary canal | 7.50e-10 | 9 |
epithelial cell | 2.48e-09 | 25 |
columnar/cuboidal epithelial cell | 7.82e-08 | 7 |
brush border epithelial cell | 1.43e-07 | 6 |
gut absorptive cell | 1.43e-07 | 6 |
enterocyte | 1.43e-07 | 6 |
endodermal cell | 4.99e-07 | 20 |