FFCP PHASE1:Hg19::chr4:146404119..146404158,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4086 | |EntrezGene=4086 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6767 | |HGNC=6767 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=154bp_to_ENST00000514168_5end | |association_with_transcript=154bp_to_ENST00000514168_5end | ||
|cluster_id=chr4:146404119..146404158,+ | |||
|coexpression_cluster_id=C4376 | |||
|description=CAGE_peak_9_at_SMAD1_5end | |description=CAGE_peak_9_at_SMAD1_5end | ||
|id=chr4:146404119..146404158,+ | |id=chr4:146404119..146404158,+ | ||
|ontology_enrichment_celltype=CL:0002139!5.38e-27!24;CL:0000071!1.56e-19!18;CL:0002546!1.56e-19!18;CL:0000115!1.81e-17!35;CL:0002078!1.29e-14!44;CL:0000213!7.04e-11!57;CL:0000215!7.04e-11!57;CL:1000413!4.00e-09!9;CL:0005020!4.51e-09!6;CL:0002138!4.51e-09!6;CL:0005022!4.51e-09!6;CL:0002543!1.80e-08!6;CL:0002544!2.00e-08!6 | |ontology_enrichment_celltype=CL:0002139!5.38e-27!24;CL:0000071!1.56e-19!18;CL:0002546!1.56e-19!18;CL:0000115!1.81e-17!35;CL:0002078!1.29e-14!44;CL:0000213!7.04e-11!57;CL:0000215!7.04e-11!57;CL:1000413!4.00e-09!9;CL:0005020!4.51e-09!6;CL:0002138!4.51e-09!6;CL:0005022!4.51e-09!6;CL:0002543!1.80e-08!6;CL:0002544!2.00e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0002139;8.44e-51;24!CL:0000071;5.71e-32;18!CL:0000115;1.09e-30;36!CL:0002138;1.90e-21;6!CL:0002543;5.16e-21;6!CL:0002078;1.18e-20;45!CL:0000213;1.47e-13;58!CL:0000215;1.47e-13;58!CL:0000047;3.42e-11;2!CL:1000413;4.96e-09;9!CL:0002544;3.82e-08;6!CL:0002144;4.14e-08;3!CL:0002618;1.96e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,7.09e-51,24;CL:0000115,5.33e-37,36;CL:0000071,5.02e-32,18;CL:0002546,5.02e-32,18;CL:0002078,8.24e-29,45;CL:0000213,1.80e-21,58;CL:0000215,1.80e-21,58;CL:0005020,1.83e-21,6;CL:0002138,1.83e-21,6;CL:0005022,1.83e-21,6;CL:0002543,4.04e-21,6;CL:0000222,1.03e-10,121;CL:0000047,4.97e-10,8;CL:1000413,5.13e-09,9;CL:0002544,3.60e-08,6;CL:0002144,4.14e-08,3;CL:0000076,1.37e-07,63;CL:0002618,1.59e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002546;5.71e-32;18!CL:0005022;1.90e-21;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!1.56e-19!18;UBERON:0004638!1.56e-19!18;UBERON:0004852!1.56e-19!18;UBERON:0006914!2.25e-17!25;UBERON:0000487!1.37e-16!22;UBERON:0004111!1.43e-14!241;UBERON:0000477!2.63e-14!286;UBERON:0000025!1.36e-12!194;UBERON:0007023!9.27e-12!115;UBERON:0000483!3.16e-10!309;UBERON:0000119!6.78e-10!312;UBERON:0004872!2.83e-09!84;UBERON:0003915!4.00e-09!9;UBERON:0004700!4.00e-09!9;UBERON:0001917!4.00e-09!9;UBERON:0001017!1.61e-08!82;UBERON:0000055!2.24e-08!69;UBERON:0000073!7.86e-08!94;UBERON:0001016!7.86e-08!94;UBERON:0002465!8.34e-08!10;UBERON:0005743!1.08e-07!86;UBERON:0004535!1.99e-07!110;UBERON:0001049!2.92e-07!57;UBERON:0005068!2.92e-07!57;UBERON:0006241!2.92e-07!57;UBERON:0007135!2.92e-07!57;UBERON:0000468!4.86e-07!659;UBERON:0001009!5.95e-07!113;UBERON:0002049!8.17e-07!79;UBERON:0007798!8.17e-07!79;UBERON:0000467!8.73e-07!625 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;5.71e-32;18!UBERON:0001986;5.71e-32;18!UBERON:0004852;5.71e-32;18!UBERON:0000487;9.42e-26;22!UBERON:0006914;2.15e-22;25!UBERON:0001473;5.00e-16;8!UBERON:0004536;5.00e-16;8!UBERON:0006558;5.00e-16;8!UBERON:0000490;9.01e-16;33!UBERON:0001638;6.20e-14;9!UBERON:0003920;6.20e-14;9!UBERON:0004582;6.20e-14;9!UBERON:0002465;9.08e-13;10!UBERON:0000055;1.33e-12;65!UBERON:0002370;4.99e-11;2!UBERON:0005058;4.99e-11;2!UBERON:0009113;4.99e-11;2!UBERON:0003915;4.96e-09;9!UBERON:0004700;4.96e-09;9!UBERON:0001917;4.96e-09;9!UBERON:0002049;8.97e-09;75!UBERON:0007798;8.97e-09;75!UBERON:0002405;2.20e-08;27!UBERON:0010523;4.14e-08;3!UBERON:0001915;4.14e-08;3!UBERON:0001982;4.14e-08;3!UBERON:0007500;1.40e-07;56!UBERON:0001981;1.40e-07;56!UBERON:0004537;1.40e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,5.02e-32,18;UBERON:0001986,5.02e-32,18;UBERON:0004852,5.02e-32,18;UBERON:0000487,8.48e-26,22;UBERON:0006914,1.96e-22,25;UBERON:0000055,5.72e-20,68;UBERON:0002049,7.02e-17,78;UBERON:0007798,7.02e-17,78;UBERON:0001473,4.86e-16,8;UBERON:0004536,4.86e-16,8;UBERON:0006558,4.86e-16,8;UBERON:0001638,5.28e-14,9;UBERON:0003920,5.28e-14,9;UBERON:0004582,5.28e-14,9;UBERON:0002465,8.88e-13,10;UBERON:0007500,1.27e-11,59;UBERON:0001981,1.27e-11,59;UBERON:0004537,1.27e-11,59;UBERON:0006965,1.27e-11,59;UBERON:0004535,6.29e-11,109;UBERON:0001009,1.58e-10,112;UBERON:0003915,5.13e-09,9;UBERON:0004700,5.13e-09,9;UBERON:0001917,5.13e-09,9;UBERON:0010523,4.14e-08,3;UBERON:0001915,4.14e-08,3;UBERON:0001982,4.14e-08,3;UBERON:0004872,1.70e-07,83 | |||
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| ||
|short_description=p9@SMAD1 | |short_description=p9@SMAD1 | ||
}} | }} |
Latest revision as of 23:13, 15 September 2015
Short description: | p9@SMAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SMAD1_5end |
Coexpression cluster: | C4376_Endothelial_acute_Neural_Lymphatic_uterus_thymus_skin |
Association with transcript: | 154bp_to_ENST00000514168_5end |
EntrezGene: | SMAD1 |
HGNC: | 6767 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 7.09e-51 | 24 |
endothelial cell | 5.33e-37 | 36 |
blood vessel endothelial cell | 5.02e-32 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.02e-32 | 18 |
meso-epithelial cell | 8.24e-29 | 45 |
lining cell | 1.80e-21 | 58 |
barrier cell | 1.80e-21 | 58 |
lymphangioblast | 1.83e-21 | 6 |
endothelial cell of lymphatic vessel | 1.83e-21 | 6 |
vascular lymphangioblast | 1.83e-21 | 6 |
vein endothelial cell | 4.04e-21 | 6 |
mesodermal cell | 1.03e-10 | 121 |
neuronal stem cell | 4.97e-10 | 8 |
endothelial cell of artery | 5.13e-09 | 9 |
aortic endothelial cell | 3.60e-08 | 6 |
capillary endothelial cell | 4.14e-08 | 3 |
squamous epithelial cell | 1.37e-07 | 63 |
endothelial cell of umbilical vein | 1.59e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 5.02e-32 | 18 |
endothelium | 5.02e-32 | 18 |
cardiovascular system endothelium | 5.02e-32 | 18 |
simple squamous epithelium | 8.48e-26 | 22 |
squamous epithelium | 1.96e-22 | 25 |
vessel | 5.72e-20 | 68 |
vasculature | 7.02e-17 | 78 |
vascular system | 7.02e-17 | 78 |
lymphatic vessel | 4.86e-16 | 8 |
lymph vasculature | 4.86e-16 | 8 |
lymphatic part of lymphoid system | 4.86e-16 | 8 |
vein | 5.28e-14 | 9 |
venous blood vessel | 5.28e-14 | 9 |
venous system | 5.28e-14 | 9 |
lymphoid system | 8.88e-13 | 10 |
epithelial tube open at both ends | 1.27e-11 | 59 |
blood vessel | 1.27e-11 | 59 |
blood vasculature | 1.27e-11 | 59 |
vascular cord | 1.27e-11 | 59 |
cardiovascular system | 6.29e-11 | 109 |
circulatory system | 1.58e-10 | 112 |
endothelial tube | 5.13e-09 | 9 |
arterial system endothelium | 5.13e-09 | 9 |
endothelium of artery | 5.13e-09 | 9 |
microcirculatory vessel | 4.14e-08 | 3 |
endothelium of capillary | 4.14e-08 | 3 |
capillary | 4.14e-08 | 3 |
splanchnic layer of lateral plate mesoderm | 1.70e-07 | 83 |