FFCP PHASE1:Hg19::chr17:48268232..48268300,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000494334_5end | |association_with_transcript=0bp_to_ENST00000494334_5end | ||
|cluster_id=chr17:48268232..48268300,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_26_at_COL1A1_5end | |description=CAGE_peak_26_at_COL1A1_5end | ||
|id=chr17:48268232..48268300,- | |id=chr17:48268232..48268300,- | ||
|ontology_enrichment_celltype=CL:0000055!1.07e-40!180;CL:0000057!5.22e-26!75;CL:0000183!1.28e-15!59;CL:0000680!2.59e-15!57;CL:0000056!2.59e-15!57;CL:0000355!2.59e-15!57;CL:0000187!1.80e-14!54;CL:0000393!3.38e-12!60;CL:0000211!3.38e-12!60;CL:0000192!3.51e-11!42;CL:0000514!3.51e-11!42;CL:0000048!6.69e-10!430;CL:0002620!4.92e-09!23;CL:0000723!5.19e-09!436;CL:0000034!1.77e-08!444;CL:0002334!7.71e-08!12;CL:0000499!1.43e-07!27;CL:0000222!2.02e-07!119;CL:0000359!2.44e-07!32;CL:0002494!3.31e-07!16;CL:0002371!6.64e-07!591;CL:0000327!9.15e-07!14 | |ontology_enrichment_celltype=CL:0000055!1.07e-40!180;CL:0000057!5.22e-26!75;CL:0000183!1.28e-15!59;CL:0000680!2.59e-15!57;CL:0000056!2.59e-15!57;CL:0000355!2.59e-15!57;CL:0000187!1.80e-14!54;CL:0000393!3.38e-12!60;CL:0000211!3.38e-12!60;CL:0000192!3.51e-11!42;CL:0000514!3.51e-11!42;CL:0000048!6.69e-10!430;CL:0002620!4.92e-09!23;CL:0000723!5.19e-09!436;CL:0000034!1.77e-08!444;CL:0002334!7.71e-08!12;CL:0000499!1.43e-07!27;CL:0000222!2.02e-07!119;CL:0000359!2.44e-07!32;CL:0002494!3.31e-07!16;CL:0002371!6.64e-07!591;CL:0000327!9.15e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000057;3.93e-11;73!CL:0000134;4.56e-11;55!CL:0000723;3.75e-10;61!CL:0002320;5.65e-10;188!CL:0000048;7.00e-10;58!CL:0002334;3.56e-09;12!CL:0000187;4.42e-09;55!CL:0002494;2.21e-08;16!CL:0000499;7.58e-08;28!CL:0000192;7.59e-08;43!CL:0000393;9.48e-08;61!CL:0000211;9.48e-08;61!CL:0000034;2.22e-07;69!CL:0000327;2.31e-07;15!CL:0002570;2.78e-07;8!CL:0002620;3.13e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.79e-29,76;CL:0000048,5.08e-19,427;CL:0000723,5.33e-18,433;CL:0000034,1.08e-16,441;CL:0000680,6.67e-16,58;CL:0000056,6.67e-16,58;CL:0000355,6.67e-16,58;CL:0000187,6.81e-15,55;CL:0000393,4.64e-12,61;CL:0000211,4.64e-12,61;CL:0000192,7.48e-11,43;CL:0000514,7.48e-11,43;CL:0002320,1.40e-10,361;CL:0002334,3.12e-09,12;CL:0000134,7.84e-09,354;CL:0002494,1.84e-08,16;CL:0000499,7.46e-08,28;CL:0000327,2.27e-07,15;CL:0002570,2.74e-07,8;CL:0000219,2.76e-07,386;CL:0002620,3.70e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000355;2.45e-09;58!CL:0000514;7.59e-08;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;5.74e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,6.08e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.05e-18!83;UBERON:0002329!1.05e-18!83;UBERON:0003077!1.05e-18!83;UBERON:0003059!1.05e-18!83;UBERON:0007282!1.05e-18!83;UBERON:0009618!1.05e-18!83;UBERON:0007285!1.05e-18!83;UBERON:0004290!8.64e-17!70;UBERON:0002385!1.85e-15!63;UBERON:0001015!1.85e-15!63;UBERON:0000383!1.85e-15!63;UBERON:0001134!2.01e-15!61;UBERON:0002036!2.01e-15!61;UBERON:0003082!2.01e-15!61;UBERON:0005256!2.12e-13!143;UBERON:0000486!5.72e-13!82;UBERON:0002100!4.51e-10!216;UBERON:0004872!7.75e-08!84;UBERON:0000475!8.24e-08!365;UBERON:0000948!7.16e-07!24;UBERON:0005498!7.16e-07!24;UBERON:0004140!7.16e-07!24;UBERON:0009881!7.16e-07!24;UBERON:0004141!7.16e-07!24;UBERON:0003084!7.16e-07!24;UBERON:0007005!7.16e-07!24;UBERON:0004139!7.16e-07!24;UBERON:0004291!7.16e-07!24;UBERON:0001013!7.50e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;5.24e-10;198!UBERON:0003688;8.04e-07;6!UBERON:0002358;8.04e-07;6!UBERON:0003684;8.04e-07;6!UBERON:0001178;8.04e-07;6!UBERON:0001013;9.81e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,2.32e-16,62;UBERON:0002036,2.32e-16,62;UBERON:0003082,2.32e-16,62;UBERON:0007524,2.30e-15,73;UBERON:0002385,2.39e-15,64;UBERON:0001015,2.39e-15,64;UBERON:0000383,2.39e-15,64;UBERON:0002329,4.06e-15,71;UBERON:0003059,4.06e-15,71;UBERON:0007282,4.06e-15,71;UBERON:0004290,4.06e-15,71;UBERON:0009618,4.06e-15,71;UBERON:0003077,1.12e-14,72;UBERON:0007285,1.12e-14,72;UBERON:0007503,1.74e-14,78;UBERON:0000486,5.73e-12,83;UBERON:0002384,5.96e-11,371;UBERON:0003104,1.68e-10,160;UBERON:0009142,1.68e-10,160;UBERON:0005256,1.85e-10,122;UBERON:0000948,3.64e-07,24;UBERON:0005498,3.64e-07,24;UBERON:0004140,3.64e-07,24;UBERON:0009881,3.64e-07,24;UBERON:0004141,3.64e-07,24;UBERON:0003084,3.64e-07,24;UBERON:0007005,3.64e-07,24;UBERON:0004139,3.64e-07,24;UBERON:0004291,3.64e-07,24;UBERON:0003688,8.20e-07,6;UBERON:0002358,8.20e-07,6;UBERON:0003684,8.20e-07,6;UBERON:0001178,8.20e-07,6;UBERON:0001013,9.58e-07,14 | |||
|phase1_expression=15.0793054794562,11.5614282901131,17.3373917038045,12.0087958023756,23.6889380046463,12.2127393374052,12.6649939084155,0,0.522371256399677,0.491467873003018,0.697801167972428,0.873765488520689,7.64924236862515,1.98026164736075,6.62794751455832,1.34465029290355,0.602694528023977,0.730310090387373,1.46379839637152,4.062994916534,7.95602695852587,9.71709636582072,0.286235987131057,0.684372125364421,1.63205431473244,0.0764134057479513,0,0.0787107813136792,0,0,0.154816123316076,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,41.4471672733735,7.37770945674,5.11450247374121,8.31310050484502,12.5334477658972,10.1392563272577,6.36228757640879,26.2782829963423,1.32348744029695,6.87361132133948,3.95256535619067,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,42.2426158941021,8.737505304856,3.04541115870403,28.3968254541326,11.3493882303474,7.28880880184999,13.8773694448616,16.5267257439497,1.8672662123986,2.42479209725439,1.79808093424805,11.5031645010148,10.37116664064,1.87457145467037,0.936480230490962,1.71141546463335,0.896692083310806,0.352303495931295,0.647491777472526,0.702254033511242,1.63323337003915,1.10550885580591,1.85986406116378,26.1360628602052,30.9083661598196,14.5625817910084,20.8399261126709,1.0100166837244,1.62654075833553,2.21651292387346,8.77955241761676,12.5659996277598,19.380709598951,3.17610112848059,8.79009214875424,13.8812302732069,13.1397778718928,14.7044637081357,6.08009922506789,9.01741890159702,6.88632368426882,12.658224918095,6.72315335612271,9.59248342127635,9.38908966151453,7.75901072730297,12.4253357380815,2.72030665214629,3.05209066158878,0,0,0,0,0.132529768321485,0.232387885739037,0.207322110030741,0,0,3.12899064659632,3.85944562915731,1.38134921352481,1.85747171212792,1.44375896333917,0.236613600079688,0,0,0,0,0.237270619111097,0,0,0,0,11.2193419042757,19.3439785325758,36.7521778463855,0,0,0.590789906681404,0,0,2.23038153388083,0,0,0,0,1.3032332212413,2.07986957055916,0,0.34779121492523,5.9878434060269,0,0,0,0,0,0,0,0,0,1.17587489739202,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,1.71072446022705,0.205654985406647,0,0,2.91540819297938,3.92364061949952,2.0534720029866,8.53193324001333,21.4593867511129,10.988935783228,7.97814349754611,8.32059495290929,1.80045161983499,2.83698264046557,4.26275486425759,14.1548213721566,33.6425395342695,8.23240336780769,4.56030658011229,8.5294067698211,3.95975936466715,0.602878754119172,0.871533458600294,1.3996218765488,0,0,0,13.179367052037,36.7558194669164,0,3.61953266668948,5.75333703141074,1.25342674267927,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,2.4538298343828,8.50289885801451,1.89885516589815,67.1745882744507,54.9561285495258,35.0099361375335,15.8140910240163,8.42649079237613,13.6444502433591,10.3473071292505,5.31380478828349,12.7214726293775,2.43274120510632,10.573262502988,15.4414540714885,0,0,0,0.909382714338778,13.3148351608398,9.97887967987945,20.3448402411397,14.2719635157898,49.9574968090871,28.8313085825327,14.8395102229344,39.2483567590402,16.325987308949,1.69630663182921,8.34540108971697,1.47828880824856,4.67328986265259,3.7187321107187,0,0.40101294060657,0,6.19998020088876,6.91946438425525,9.70320670699738,0,0,0,0,0,0,0,0.863663664408557,3.08454505380579,2.43851793789468,6.52196706011309,0,0,0.223874754722178,0,0,0,0.656029291399411,0.325378394664303,0.309123034943167,2.47237555009527,0.907604499126468,0,1.95018073810956,9.64103579064957,1.7400729292582,1.23238893691716,3.37708084397485,2.48105830472155,3.54486808065303,7.68588477745411,2.38634556765083,16.2038304877062,0.330569830721956,0.960950336825531,0.127612712494584,0,1.85938219718914,20.4628025439916,0,4.31247012246524,0,0.869932992075073,1.29726953372744,0.858749320451947,2.60510858551767,4.42931194606216,10.6752908597342,5.11795582622668,6.84702380854273,1.59101623962968,7.06453776179307,2.87795932133304,13.4523144570667,7.7756185548153,1.61745985258653,3.17020642346017,2.10629228119491,6.82687234725426,2.19342140668156,1.05650146756755,4.36799716505554,15.271786651001,2.26016233240486,5.51365343546124,1.32687795048244,1.31535265576129,9.260408548267,9.83842128069949,2.02910376962704,1.8589409885985,3.94373843545138,2.58140433967293,4.12645972255109,3.5667105148125,0.709522128141196,4.64436797654861,3.62224382255892,3.03578539012572,4.54915136318478,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0.284136146806413,0.47748896947538,0.296964680832639,0,0,0,0,0,0,0.996239941255349,0.552567831062295,0,0.102268682502155,0,15.5519793830904,0,0,0,0.394573622547734,0,4.44547960578548,0,0,0,0.260427761085233,0.0874599999961957,0,0,0,0.236387681767936,0,0.291604613383254,0,0,0,0,0,0,0,0,0,3.77056266668606,0,0,0,0,0,4.30508688988753,0,0,0,0,0,0,0,0,0,0,0,0,0,0.99526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| ||
|short_description=p26@COL1A1 | |short_description=p26@COL1A1 | ||
}} | }} |
Latest revision as of 00:35, 16 September 2015
Short description: | p26@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_26_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 0bp_to_ENST00000494334_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.79e-29 | 76 |
multi fate stem cell | 5.08e-19 | 427 |
somatic stem cell | 5.33e-18 | 433 |
stem cell | 1.08e-16 | 441 |
muscle precursor cell | 6.67e-16 | 58 |
myoblast | 6.67e-16 | 58 |
multi-potent skeletal muscle stem cell | 6.67e-16 | 58 |
muscle cell | 6.81e-15 | 55 |
electrically responsive cell | 4.64e-12 | 61 |
electrically active cell | 4.64e-12 | 61 |
smooth muscle cell | 7.48e-11 | 43 |
smooth muscle myoblast | 7.48e-11 | 43 |
connective tissue cell | 1.40e-10 | 361 |
preadipocyte | 3.12e-09 | 12 |
mesenchymal cell | 7.84e-09 | 354 |
cardiocyte | 1.84e-08 | 16 |
stromal cell | 7.46e-08 | 28 |
extracellular matrix secreting cell | 2.27e-07 | 15 |
mesenchymal stem cell of adipose | 2.74e-07 | 8 |
motile cell | 2.76e-07 | 386 |
skin fibroblast | 3.70e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 2.32e-16 | 62 |
striated muscle tissue | 2.32e-16 | 62 |
myotome | 2.32e-16 | 62 |
dense mesenchyme tissue | 2.30e-15 | 73 |
muscle tissue | 2.39e-15 | 64 |
musculature | 2.39e-15 | 64 |
musculature of body | 2.39e-15 | 64 |
somite | 4.06e-15 | 71 |
presomitic mesoderm | 4.06e-15 | 71 |
presumptive segmental plate | 4.06e-15 | 71 |
dermomyotome | 4.06e-15 | 71 |
trunk paraxial mesoderm | 4.06e-15 | 71 |
paraxial mesoderm | 1.12e-14 | 72 |
presumptive paraxial mesoderm | 1.12e-14 | 72 |
epithelial vesicle | 1.74e-14 | 78 |
multilaminar epithelium | 5.73e-12 | 83 |
connective tissue | 5.96e-11 | 371 |
mesenchyme | 1.68e-10 | 160 |
entire embryonic mesenchyme | 1.68e-10 | 160 |
trunk mesenchyme | 1.85e-10 | 122 |
heart | 3.64e-07 | 24 |
primitive heart tube | 3.64e-07 | 24 |
primary heart field | 3.64e-07 | 24 |
anterior lateral plate mesoderm | 3.64e-07 | 24 |
heart tube | 3.64e-07 | 24 |
heart primordium | 3.64e-07 | 24 |
cardiac mesoderm | 3.64e-07 | 24 |
cardiogenic plate | 3.64e-07 | 24 |
heart rudiment | 3.64e-07 | 24 |
omentum | 8.20e-07 | 6 |
peritoneum | 8.20e-07 | 6 |
abdominal cavity | 8.20e-07 | 6 |
visceral peritoneum | 8.20e-07 | 6 |
adipose tissue | 9.58e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.08e-07 | 14 |