FFCP PHASE1:Hg19::chr2:10262492..10262506,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6241 | |EntrezGene=6241 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10452 | |HGNC=10452 | ||
|TSSclassifier=strong | |||
|UniProt=P31350 | |UniProt=P31350 | ||
|association_with_transcript=37bp_to_ENST00000304567,ENST00000360566_5end | |association_with_transcript=37bp_to_ENST00000304567,ENST00000360566_5end | ||
|cluster_id=chr2:10262492..10262506,+ | |||
|description=CAGE_peak_4_at_RRM2_5end | |description=CAGE_peak_4_at_RRM2_5end | ||
|id=chr2:10262492..10262506,+ | |id=chr2:10262492..10262506,+ | ||
|ontology_enrichment_celltype=CL:0000066!9.61e-14!254;CL:0000548!2.38e-09!679;CL:0000004!2.38e-09!679;CL:0000255!2.38e-09!679;CL:0000012!3.00e-09!682 | |ontology_enrichment_celltype=CL:0000066!9.61e-14!254;CL:0000548!2.38e-09!679;CL:0000004!2.38e-09!679;CL:0000255!2.38e-09!679;CL:0000012!3.00e-09!682 | ||
|ontology_enrichment_celltype_v019=CL:0000123;1.53e-07;2!CL:0000242;1.53e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,1.23e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!4.20e-30!235;DOID:14566!1.01e-28!239;DOID:0050687!3.23e-17!143;DOID:305!1.75e-14!106;DOID:0050686!1.47e-12!137;DOID:2531!9.50e-10!51;DOID:0060083!9.50e-10!51;DOID:1240!2.07e-09!39;DOID:8692!3.29e-07!31 | |ontology_enrichment_disease=DOID:162!4.20e-30!235;DOID:14566!1.01e-28!239;DOID:0050687!3.23e-17!143;DOID:305!1.75e-14!106;DOID:0050686!1.47e-12!137;DOID:2531!9.50e-10!51;DOID:0060083!9.50e-10!51;DOID:1240!2.07e-09!39;DOID:8692!3.29e-07!31 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,4.89e-09,143;DOID:162,7.09e-08,235;DOID:14566,1.49e-07,239 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;6.23e-09;9!UBERON:0001557;6.23e-09;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.28e-08,9;UBERON:0000013,8.42e-07,5;UBERON:0002410,8.42e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0,0,0,0,0,0,0.984968464614303,0.204000691244253,0,1.14494394852423,1.09499540058307,0.87879847716362,0.458480434487708,0.246301768349837,0.472264687882075,0,0,0,0.919421224478927,0.6024118375565,0.369754010166788,0.232401601740905,0,0.293600439334847,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0.552700035571697,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.511450247374121,1.44575660953827,0,0.144846518960824,1.5905718941022,0,0.283604451492204,0.221729397462564,0.351339142772504,0,0.364295288292542,0,0,0,0,0,0.571994910780128,0,0.198762407366705,0,0.347140501607594,0.56530794192401,0,0.550236083880135,0.417989933073621,0,0,0,0,0,0.24406205754817,0,0,0.803697554556718,1.34717623575702,1.35133776579987,0,0,0.916008719652036,0,0,0,0,0.25326102332916,0,0.286836620748814,0,0,0,0.49333509683432,0.311211035399766,0.269421344139376,0.326923806226917,0,0,1.17160715916898,0,0,0,0.587172493218824,0.809364721840658,0.421352420106746,0,0.61417158655884,0,0,0,0,0,1.34668891163253,0.750711119231785,0.554128230968366,0.877955241761676,0.612975591598039,0,0.340296549480063,0.358779271377724,0,0.211931901159562,0,0.103052529238439,0,0.18611685633159,0,0.0974370051611986,0,0,0,0,0,0.508681776931463,0,0,0.286804595389004,0.121973706129595,0.397589304964456,0.464775771478074,0.414644220061482,0.252320850875628,0,0,0,0,0,0,1.18306800039844,0.842923450390509,0.482022059766964,0.882351781859152,1.08939722046203,1.18635309555548,1.07865046528132,1.76599318612811,0,0,0,0,0,0,0,0,0,0.491953754172454,0.343135620597051,0,0,0.502644862058154,0.0925884451585296,0,0,0,1.15930404975077,0.117408694235822,0,0,1.14152491340759,0,1.71697232418975,0,0.234004265139238,0.148631162288728,0,0.16798212819886,0.283550194484773,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0.380987365753014,0,0,0,0.102827492703324,0,0,0.560655421726804,0.43596006883328,0.7333828582095,0,0,0,0,0,0.514414748524284,0,1.0656887160644,0,0,0,0.325736184293735,0,0.791951872933429,0,0,0,0,0,0,0,0,1.42636905040718,0.144781306667579,0.410952645100767,0.179060963239896,0.560425719967636,0,0,0,2.28685161800217,0,1.54657762555539,0.670065061337395,0.637938751653163,0,0,0,0,0,0.271265023699736,0.207970861530807,0,0.630809660135739,0,0,0,0,1.32845119707087,0,0.0868836144680828,0,0,0,0,0,0.303127571446259,0,0.30239029332968,0,0,0,0,0,0,0,0.308419387605311,0.355123450626254,0.164254312027618,0.519254429183621,0.348631135379878,0.725156697549733,0,0,0.574072240823034,0,0,0.451199612907412,0.15403067420883,0,1.46139224653261,0.316654886678627,0,0.510281115829547,0.863663664408557,0,0,0.501689773854853,0.509752546090077,0.831076008928724,0,0,0,0.512900250232778,0.656029291399411,0,0,1.19040304263846,0.660075999364704,0,0,1.6068392984416,0.096670718292122,0.308097234229289,0.460511024178389,0,0.322260734604821,0.290033387828457,0.596586391912706,0.178064071293475,0,0,0.255225424989168,0,0,0.31481234683064,0,0,0.532306030317022,0.869932992075073,0,0,0,0,0,0,0,0.318203247925937,0,0.179872457583315,0,0.471249609382746,0,0,0,0,0,0,0.409499734223957,0,0,0.551365343546124,0,0,0,0,0,0.30982349809975,0.281695602532241,0.573645408816206,0.196498082026242,0,0,0,0,0.75894634753143,0.349934720244983,0.192444225451024,0.670302275535787,0,0,0.43050537267123,1.68471475667626,0,0,0,0,0,0,0,0,0,0.79312517629427,1.28188885352968,0.962479855263359,0.245040215981032,0.743212700502875,1.15415370381156,0.355709216742071,0.637705090915289,0.399158742865633,0,0.423347165447766,0.324621940274555,0.280797178113459,0.228234679033192,0.94007937463814,0,0,0.321176150207399,0.403599414382095,0,0.343505344755765,0.614481528616916,0.447352215784832,0.667396566847634,0.390776190804081,0.556812347790485,3.69262196843137,0.540911356951966,0.66614393599564,1.4098700508785,0.748562161632879,0,0.970884173996107,1.67165076416218,0.852408440419239,0,0.890894042497916,0,0,0,0,0.659215496907038,0.422250816255987,0,0,1.51159648712566,0.613612095012929,0,0,0.269605053441981,0,0.511572370226872,0,0,0,0,0.185536196323703,0,0,0.174919999992391,0,0.341380344856499,0.508507300585533,1.18193840883968,0,2.62444152044929,1.38899995946634,0,0.120596438625408,0,0,0,0,0.21787692703798,0.278847488557207,0,0,0.46112780877612,0.628303510868405,0,0,0.183195186803725,0,0,0.627921025580099,0.166211681900156,0.676786981851542,0.392125068635479,0.503464760927528,0.75901493089674,0.476809736941136,0.421996129056054,0,0.424059214301822,0.432777279484182,0.995261931078505,0,0,0.296521128680622,1.35920332841153,1.14864144456001,0,0,0,0.729819156862664,0.19566461893209,0.242780379534093,0,0,0,0.063186579628488,0.901940516486955,1.34794648816421,1.32930774541437,0,0,0,0.284609546029793,0.277349346026277,0.173559738335131,0.0979923974143777,0.522355239482415,0,1.54787429224455,0.967563312890852,0.877071805034227,1.23173185579814,0.290967049465258,0.0882561266915003,0,0.137041924646751,0.397429223405979,0,0.586654148204409,0,0,0,0.288180834308212,0.916292769327325,0.686379991447858,0.14405479798815,0.124252535565433,0.471388069233591,1.08723364858891,0.523014231561666,0.101998217636322,0,0,0,1.27746588066972,1.28929632425987,0.262887354279314,0,0,0,0.399358000997982,0,0.223171457441873,0,0,1.16495949527454,2.28471228690949,1.56590130924216,2.29172049104229,0.196854963029498,0.169346664131569,0,0,0,0.137539436597234,0,0,0,0,0,0,0.314727528809989,0.316801009558219,0,0.191915197319445,0,0,2.28841683889275,0,0,0,1.19730191562487,0,0,0.79318464064088,0,0,0,0,0,0,0,0,0,0,0,0.243585196761792,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0.830091809617385,0.624902039810533,0,0,0,1.40500471742064,1.30428925749743,0,0,0,0,0,0,0,0,0,0.295710299979268,0.159296767163702,0,0.310525913752519,0.414706207840855,0,0,0.150257608997218,0,0,0,0.214821114084977,0,0.398095888698616,0,0,0,1.26184898228651,0.770479321629213,0.428883182749851,0,0.906823702049089,0.231522474323834,0.244736704506468,0,0.617602894321944,0,1.41351316756705,0.38582807654183,0.506827321959218,0.256241518587947,0.690860683462397,0.607719912354764,0,0,0,0,0,0.245772908753719,0.211312123358627,0.39997479170986,0.106691729694141,0.172214979660816,0,0.184105950251841,0.139879507719444,0,0.383683113910955,1.61737217095023,0,1.31051565830417,0.678930119816101,0.425149840203366,0.247871528518004,1.67593475391973,0,0.23658523500376,0.80057074828547,0.352675943690684,0,0,0,0,0,0.252071696221718,0,0,0,0.0981477185010256,0.235939446695481,0.183428598521679,0.115525666150338,0,0,0.198916222116275,0,0.20170506870352,0,0.261906694481422,0.327543835020193,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0.0887023701626388,0.345701962667338,0.171488009437418,0,0,0.472775363535873,1.11231401892069,0,0,0,0,0,0.47775168788705,0,2.68623139945635,0.813689977576877,1.39086617842064,0,0.207216164163037,0.17071847709395,0,0,0,0.170426809518315,0,0.9164274741762,0,0,0,0.687051635306701,0.609589624911347,0,0,0,0,0.233939463462106,0,0.118920090777569,0.45178432815584,0.769583617218004,0.905777061400041,0,0.218559560503957,0,0,0,0,0,0,0.169927114687817,0,0.128915775947154,0.299823467774787,0,0,0,0,0,0,0.315543124386369,0,0,0,0,0,0.432626562123789,0.252332849670158,0.98339014767326,1.0135880080915,1.01988829741982,0,0,0.250707539292375,0,0.267964130156178,0,0,0,0,0.129177819672012,0.0620747142958579,0,0,0.202117188958219,0.435433495793923,0,0.0673520530145875,0.143444410785353,0.332660356546013,0.814032686109745,0.747091421144008,1.9307228228694,0,0,0.122241444182866,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0,0,0,0,0,0,0.984968464614303,0.204000691244253,0,1.14494394852423,1.09499540058307,0.87879847716362,0.458480434487708,0.246301768349837,0.472264687882075,0,0,0,0.919421224478927,0.6024118375565,0.369754010166788,0.232401601740905,0,0.293600439334847,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0.552700035571697,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.511450247374121,1.44575660953827,0,0.144846518960824,1.5905718941022,0,0.283604451492204,0.221729397462564,0.351339142772504,0,0.364295288292542,0,0,0,0,0,0.571994910780128,0,0.198762407366705,0,0.347140501607594,0.56530794192401,0,0.550236083880135,0.417989933073621,0,0,0,0,0,0.24406205754817,0,0,0.803697554556718,1.34717623575702,1.35133776579987,0,0,0.916008719652036,0,0,0,0,0.25326102332916,0,0.286836620748814,0,0,0,0.49333509683432,0.311211035399766,0.269421344139376,0.326923806226917,0,0,1.17160715916898,0,0,0,0.587172493218824,0.809364721840658,0.421352420106746,0,0.61417158655884,0,0,0,0,0,1.34668891163253,0.750711119231785,0.554128230968366,0.877955241761676,0.612975591598039,0,0.340296549480063,0.358779271377724,0,0.211931901159562,0,0.103052529238439,0,0.18611685633159,0,0.0974370051611986,0,0,0,0,0,0.508681776931463,0,0,0.286804595389004,0.121973706129595,0.397589304964456,0.464775771478074,0.414644220061482,0.252320850875628,0,0,0,0,0,0,1.18306800039844,0.842923450390509,0.482022059766964,0.882351781859152,1.08939722046203,1.18635309555548,1.07865046528132,1.76599318612811,0,0,0,0,0,0,0,0,0,0.491953754172454,0.343135620597051,0,0,0.502644862058154,0.0925884451585296,0,0,0,1.15930404975077,0.117408694235822,0,0,1.14152491340759,0,1.71697232418975,0,0.234004265139238,0.148631162288728,0,0.16798212819886,0.283550194484773,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0.380987365753014,0,0,0,0.102827492703324,0,0,0.560655421726804,0.43596006883328,0.7333828582095,0,0,0,0,0,0.514414748524284,0,1.0656887160644,0,0,0,0.325736184293735,0,0.791951872933429,0,0,0,0,0,0,0,0,1.42636905040718,0.144781306667579,0.410952645100767,0.179060963239896,0.560425719967636,0,0,0,2.28685161800217,0,1.54657762555539,0.670065061337395,0.637938751653163,0,0,0,0,0,0.271265023699736,0.207970861530807,0,0.630809660135739,0,0,0,0,1.32845119707087,0,0.0868836144680828,0,0,0,0,0,0.303127571446259,0,0.30239029332968,0,0,0,0,0,0,0,0.308419387605311,0.355123450626254,0.164254312027618,0.519254429183621,0.348631135379878,0.725156697549733,0,0,0.574072240823034,0,0,0.451199612907412,0.15403067420883,0,1.46139224653261,0.316654886678627,0,0.510281115829547,0.863663664408557,0,0,0.501689773854853,0.509752546090077,0.831076008928724,0,0,0,0.512900250232778,0.656029291399411,0,0,1.19040304263846,0.660075999364704,0,0,1.6068392984416,0.096670718292122,0.308097234229289,0.460511024178389,0,0.322260734604821,0.290033387828457,0.596586391912706,0.178064071293475,0,0,0.255225424989168,0,0,0.31481234683064,0,0,0.532306030317022,0.869932992075073,0,0,0,0,0,0,0,0.318203247925937,0,0.179872457583315,0,0.471249609382746,0,0,0,0,0,0,0.409499734223957,0,0,0.551365343546124,0,0,0,0,0,0.30982349809975,0.281695602532241,0.573645408816206,0.196498082026242,0,0,0,0,0.75894634753143,0.349934720244983,0.192444225451024,0.670302275535787,0,0,0.43050537267123,1.68471475667626,0,0,0,0,0,0,0,0,0,0.79312517629427,1.28188885352968,0.962479855263359,0.245040215981032,0.743212700502875,1.15415370381156,0.355709216742071,0.637705090915289,0.399158742865633,0,0.423347165447766,0.324621940274555,0.280797178113459,0.228234679033192,0.94007937463814,0,0,0.321176150207399,0.403599414382095,0,0.343505344755765,0.614481528616916,0.447352215784832,0.667396566847634,0.390776190804081,0.556812347790485,3.69262196843137,0.540911356951966,0.66614393599564,1.4098700508785,0.748562161632879,0,0.970884173996107,1.67165076416218,0.852408440419239,0,0.890894042497916,0,0,0,0,0.659215496907038,0.422250816255987,0,0,1.51159648712566,0.613612095012929,0,0,0.269605053441981,0,0.511572370226872,0,0,0,0,0.185536196323703,0,0,0.174919999992391,0,0.341380344856499,0.508507300585533,1.18193840883968,0,2.62444152044929,1.38899995946634,0,0.120596438625408,0,0,0,0,0.21787692703798,0.278847488557207,0,0,0.46112780877612,0.628303510868405,0,0,0.183195186803725,0,0,0.627921025580099,0.166211681900156,0.676786981851542,0.392125068635479,0.503464760927528,0.75901493089674,0.476809736941136,0.421996129056054,0,0.424059214301822,0.432777279484182,0.995261931078505,0,0,0.296521128680622,1.35920332841153,1.14864144456001,0,0,0,0.729819156862664,0.19566461893209,0.242780379534093,0,0,0,0.063186579628488,0.901940516486955,1.34794648816421,1.32930774541437,0,0,0,0.284609546029793,0.277349346026277,0.173559738335131,0.0979923974143777,0.522355239482415,0,1.54787429224455,0.967563312890852,0.877071805034227,1.23173185579814,0.290967049465258,0.0882561266915003,0,0.137041924646751,0.397429223405979,0,0.586654148204409,0,0,0,0.288180834308212,0.916292769327325,0.686379991447858,0.14405479798815,0.124252535565433,0.471388069233591,1.08723364858891,0.523014231561666,0.101998217636322,0,0,0,1.27746588066972,1.28929632425987,0.262887354279314,0,0,0,0.399358000997982,0,0.223171457441873,0,0,1.16495949527454,2.28471228690949,1.56590130924216,2.29172049104229,0.196854963029498,0.169346664131569,0,0,0,0.137539436597234,0,0,0,0,0,0,0.314727528809989,0.316801009558219,0,0.191915197319445,0,0,2.28841683889275,0,0,0,1.19730191562487,0,0,0.79318464064088,0,0,0,0,0,0,0,0,0,0,0,0.243585196761792,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0.830091809617385,0.624902039810533,0,0,0,1.40500471742064,1.30428925749743,0,0,0,0,0,0,0,0,0,0.295710299979268,0.159296767163702,0,0.310525913752519,0.414706207840855,0,0,0.150257608997218,0,0,0,0.214821114084977,0,0.398095888698616,0,0,0,1.26184898228651,0.770479321629213,0.428883182749851,0,0.906823702049089,0.231522474323834,0.244736704506468,0,0.617602894321944,0,1.41351316756705,0.38582807654183,0.506827321959218,0.256241518587947,0.690860683462397,0.607719912354764,0,0,0,0,0,0.245772908753719,0.211312123358627,0.39997479170986,0.106691729694141,0.172214979660816,0,0.184105950251841,0.139879507719444,0,0.383683113910955,1.61737217095023,0,1.31051565830417,0.678930119816101,0.425149840203366,0.247871528518004,1.67593475391973,0,0.23658523500376,0.80057074828547,0.352675943690684,0,0,0,0,0,0.252071696221718,0,0,0,0.0981477185010256,0.235939446695481,0.183428598521679,0.115525666150338,0,0,0.198916222116275,0,0.20170506870352,0,0.261906694481422,0.327543835020193,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0.0887023701626388,0.345701962667338,0.171488009437418,0,0,0.472775363535873,1.11231401892069,0,0,0,0,0,0.47775168788705,0,2.68623139945635,0.813689977576877,1.39086617842064,0,0.207216164163037,0.17071847709395,0,0,0,0.170426809518315,0,0.9164274741762,0,0,0,0.687051635306701,0.609589624911347,0,0,0,0,0.233939463462106,0,0.118920090777569,0.45178432815584,0.769583617218004,0.905777061400041,0,0.218559560503957,0,0,0,0,0,0,0.169927114687817,0,0.128915775947154,0.299823467774787,0,0,0,0,0,0,0.315543124386369,0,0,0,0,0,0.432626562123789,0.252332849670158,0.98339014767326,1.0135880080915,1.01988829741982,0,0,0.250707539292375,0,0.267964130156178,0,0,0,0,0.129177819672012,0.0620747142958579,0,0,0.202117188958219,0.435433495793923,0,0.0673520530145875,0.143444410785353,0.332660356546013,0.814032686109745,0.747091421144008,1.9307228228694,0,0,0.122241444182866,0.406896178315738,0,0,0 | ||
|short_description=p4@RRM2 | |short_description=p4@RRM2 | ||
}} | }} |
Latest revision as of 01:07, 16 September 2015
Short description: | p4@RRM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RRM2_5end |
Coexpression cluster: | NA |
Association with transcript: | 37bp_to_ENST00000304567, ENST00000360566_5end |
EntrezGene: | RRM2 |
HGNC: | 10452 |
UniProt: | P31350 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 1.23e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.28e-08 | 9 |
sympathetic nervous system | 8.42e-07 | 5 |
autonomic nervous system | 8.42e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 4.89e-09 | 143 |
cancer | 7.09e-08 | 235 |
disease of cellular proliferation | 1.49e-07 | 239 |