FFCP PHASE1:Hg19::chr12:105478305..105478329,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=160428 | |EntrezGene=160428 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26777 | |HGNC=26777 | ||
|TSSclassifier=strong | |||
|UniProt=B4DTU7,Q3SY69 | |UniProt=B4DTU7,Q3SY69 | ||
|association_with_transcript=11bp_to_ENST00000424857,NM_001034173,NR_027752,uc001tlc.2,uc009zup.2_5end | |association_with_transcript=11bp_to_ENST00000424857,NM_001034173,NR_027752,uc001tlc.2,uc009zup.2_5end | ||
|cluster_id=chr12:105478305..105478329,- | |||
|coexpression_cluster_id=C2179 | |coexpression_cluster_id=C2179 | ||
|description=CAGE_peak_3_at_ALDH1L2_5end | |description=CAGE_peak_3_at_ALDH1L2_5end | ||
|id=chr12:105478305..105478329,- | |id=chr12:105478305..105478329,- | ||
|ontology_enrichment_celltype=CL:0000055!1.12e-36!180;CL:0000057!6.70e-23!75;CL:0000680!2.41e-12!57;CL:0000056!2.41e-12!57;CL:0000355!2.41e-12!57;CL:0000187!1.10e-11!54;CL:0000393!5.30e-11!60;CL:0000211!5.30e-11!60;CL:0002620!1.39e-10!23;CL:0000183!1.07e-09!59;CL:0000192!8.18e-08!42;CL:0000514!8.18e-08!42;CL:0000359!2.24e-07!32 | |ontology_enrichment_celltype=CL:0000055!1.12e-36!180;CL:0000057!6.70e-23!75;CL:0000680!2.41e-12!57;CL:0000056!2.41e-12!57;CL:0000355!2.41e-12!57;CL:0000187!1.10e-11!54;CL:0000393!5.30e-11!60;CL:0000211!5.30e-11!60;CL:0002620!1.39e-10!23;CL:0000183!1.07e-09!59;CL:0000192!8.18e-08!42;CL:0000514!8.18e-08!42;CL:0000359!2.24e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0002620;2.29e-12;23!CL:0000057;1.45e-11;73!CL:0002320;1.03e-07;188!CL:0000187;2.73e-07;55!CL:0000393;8.82e-07;61!CL:0000211;8.82e-07;61!CL:0002334;9.63e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.03e-28,76;CL:0000048,1.52e-14,427;CL:0000723,2.93e-14,433;CL:0000680,1.92e-13,58;CL:0000056,1.92e-13,58;CL:0000355,1.92e-13,58;CL:0000034,5.82e-13,441;CL:0000187,1.25e-12,55;CL:0002620,2.69e-12,23;CL:0000393,2.07e-10,61;CL:0000211,2.07e-10,61;CL:0000192,5.34e-08,43;CL:0000514,5.34e-08,43;CL:0000359,5.11e-07,32;CL:0002494,9.71e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000355;7.29e-08;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.08e-14!83;UBERON:0002329!1.08e-14!83;UBERON:0003077!1.08e-14!83;UBERON:0003059!1.08e-14!83;UBERON:0007282!1.08e-14!83;UBERON:0009618!1.08e-14!83;UBERON:0007285!1.08e-14!83;UBERON:0004290!2.96e-13!70;UBERON:0001134!1.24e-11!61;UBERON:0002036!1.24e-11!61;UBERON:0003082!1.24e-11!61;UBERON:0002385!1.45e-11!63;UBERON:0001015!1.45e-11!63;UBERON:0000383!1.45e-11!63;UBERON:0000486!7.40e-11!82;UBERON:0000475!1.02e-10!365;UBERON:0003102!1.28e-10!95;UBERON:0002100!3.83e-09!216;UBERON:0002199!7.33e-09!45;UBERON:0002416!7.33e-09!45;UBERON:0002097!6.12e-08!40 | |ontology_enrichment_uberon=UBERON:0000914!1.08e-14!83;UBERON:0002329!1.08e-14!83;UBERON:0003077!1.08e-14!83;UBERON:0003059!1.08e-14!83;UBERON:0007282!1.08e-14!83;UBERON:0009618!1.08e-14!83;UBERON:0007285!1.08e-14!83;UBERON:0004290!2.96e-13!70;UBERON:0001134!1.24e-11!61;UBERON:0002036!1.24e-11!61;UBERON:0003082!1.24e-11!61;UBERON:0002385!1.45e-11!63;UBERON:0001015!1.45e-11!63;UBERON:0000383!1.45e-11!63;UBERON:0000486!7.40e-11!82;UBERON:0000475!1.02e-10!365;UBERON:0003102!1.28e-10!95;UBERON:0002100!3.83e-09!216;UBERON:0002199!7.33e-09!45;UBERON:0002416!7.33e-09!45;UBERON:0002097!6.12e-08!40 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.11e-07;198!UBERON:0002199;1.23e-07;46!UBERON:0002416;1.23e-07;46!UBERON:0002097;1.32e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.76e-14,73;UBERON:0002329,1.77e-14,71;UBERON:0003059,1.77e-14,71;UBERON:0007282,1.77e-14,71;UBERON:0004290,1.77e-14,71;UBERON:0009618,1.77e-14,71;UBERON:0003077,5.14e-14,72;UBERON:0007285,5.14e-14,72;UBERON:0001134,2.91e-12,62;UBERON:0002036,2.91e-12,62;UBERON:0003082,2.91e-12,62;UBERON:0000486,4.14e-12,83;UBERON:0002385,5.94e-12,64;UBERON:0001015,5.94e-12,64;UBERON:0000383,5.94e-12,64;UBERON:0007503,1.54e-11,78;UBERON:0002199,1.77e-10,46;UBERON:0002416,1.77e-10,46;UBERON:0002097,1.11e-09,41;UBERON:0003102,3.40e-09,99;UBERON:0002384,3.22e-07,371;UBERON:0002100,3.70e-07,199;UBERON:0005256,7.80e-07,122 | |||
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|phase1_expression=19.257908202679,9.63452357509424,15.3640300464609,16.0117277365009,12.9618717383913,11.3404008133048,2.53299878168311,5.68547886084148,0.522371256399677,0.737201809504527,0,0.436882744260345,0.263766978228454,0.618831764800233,1.32558950291166,0.672325146451775,0.602694528023977,0,1.46379839637152,0.123121058076788,0.204000691244253,2.19418305034661,0,0.547497700291537,0.251085279189606,0,0,0,0,0,0,0,0.90361775633475,3.32778609150109,0,0,0.587200878669695,0,0,0,0.447830948479849,0.32389366601898,0,0.290796477559129,0,0,0,0,0,0,1.2808035326455,0,0.344745680736619,0,0,0.188242339542605,0.272906150057846,0.674170453335254,0,0.641858054152187,0,0.329851300186716,0.398927315243264,0,0.580418477257168,1.70215567407342,0.622822248995575,0,0.521482918420201,0,0,0.736555271975129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.75227465255847,2.01210257911091,8.56679164351653,6.50590474292219,9.02408239144601,3.18662341713812,4.7717156823066,4.37971383272372,0.0945348171640679,0,0.175669571386252,0.130979075497713,0,0.370784442784429,0,0,0.398873881556595,0,0,0,0.596287222100115,0,0,0,0,0,0,0,0.35576626268671,0.33472061276467,0,0,0.24406205754817,0,0,0,0.44905874525234,0,1.53316637465883,0,0.183201743930407,0,0,0.436094052142534,12.9212707440783,6.07826455989983,12.9760997196954,9.17877186396204,3.90135220418193,3.92474320099615,5.33744978648525,6.41335625884616,2.8008993185979,5.52313755485721,1.14423332179421,1.81628913173918,2.88087962239999,4.92075006850973,2.18512053781224,1.1409436430889,2.54062756938062,7.04606991862589,5.98929894162087,4.07307339436521,3.87892925384297,2.7023549808589,6.81950155760052,5.94001428641027,5.68713937340681,1.82032272387605,3.59309070908119,2.52504170931099,2.25213335769535,3.3247693858102,3.07284334616587,4.90380473278431,6.00952235626387,1.47461838108027,6.09924761342131,12.813443329114,10.172731255659,3.30100205692843,5.35873152039882,11.3361837620077,11.5392450925586,8.43881661206331,5.74878330451072,4.79624171063818,10.6777882425067,4.84938170456436,5.32514388774922,2.92181084860157,3.22165125389926,0.193260853163297,0.272746120590835,0,0.365921118388786,0.397589304964456,0.464775771478074,0.621966330092223,0.504641701751257,0,3.12899064659632,1.92972281457866,0,1.39310378409594,3.60939740834793,0,0.168584690078102,0,0,0,0,0,0,0,0,1.40241773803446,1.2347220339942,0,0,0,0,0,0.491953754172454,2.23038153388083,1.42675371031213,2.24803506515239,0.703702806881416,0.648119116109707,1.62904152655162,2.07986957055916,0,0.231860809950154,3.17003474436719,0.144366447761074,0,0,0,0,0,0,0.148631162288728,0,0.503946384596579,0.850650583454319,3.58234090811393,2.90633938513962,0.766765358330422,0,0,0,0,0,2.22242630022592,0.763976851116555,3.51652341630141,1.71072446022705,0.822619941626588,3.60411669412701,4.0015700568281,1.45770409648969,3.92364061949952,1.24675085895615,7.36848779819333,3.57656445851882,3.381211010224,5.85063856486715,3.12022310734098,0.771622122786426,2.83698264046557,0.532844358032199,6.29103172095849,4.34097284313154,1.64648067356154,4.23457039581856,6.39705507736582,0.791951872933429,0,0,0,1.2162378064119,0,0,9.82461907515489,17.2292903751171,1.42636905040718,4.48822050669496,1.64381058040307,1.79060963239896,0,0,0,0,0,0,0,1.00509759200609,0.637938751653163,0,0,0,1.34960640891054,0,5.69656549769445,11.2304265226636,10.1704523614382,10.4083593922397,10.3084445193588,11.4359517896533,6.82222512167955,5.17365356462525,6.64225598535437,2.76553752812555,3.12781012085098,0.195801157462741,1.02943027143257,0,0.215714200818617,0,0.303127571446259,0,1.81434175997808,16.8713309316768,28.2370030850035,16.5589455715513,11.6606625822688,13.816095724801,12.5466058492014,1.48418066444991,2.15893571323718,2.48586415438378,4.10635780069046,2.07701771673448,0.232420756919918,0.725156697549733,0.200506470303285,3.40699659062816,8.84071250867472,4.91646153618136,4.58935452357984,0.451199612907412,0.0770153371044148,0.784349769176855,0,0,0,0,0.215915916102139,0,0,0,0,0.831076008928724,0.223874754722178,0,0,0,0,0.650756789328606,0.206082023295445,0.824125183365091,2.55779449753823,2.87132768998086,1.30012049207304,9.64103579064957,5.80024309752732,2.15668063960502,3.37708084397485,3.85942402956686,6.66005518183296,3.77043404176994,2.04543905798642,5.9651463883314,5.78497203763423,4.99694175149276,0.510450849978337,5.2602046044886,4.64845549297286,7.870308670766,6.970372701606,0.308033580176089,1.59691809095107,0.869932992075073,3.15051172476664,8.01499365755151,1.86079184679834,1.2655176988749,6.29079639948622,0.255897791311334,5.56320684444097,1.59101623962968,3.13979456079692,2.87795932133304,3.0199073270966,2.5918728516051,1.61745985258653,4.75530963519025,0.842516912477962,0,3.1682753652067,3.16950440270266,6.14249601335936,6.22183900596336,4.52032466480971,2.2054613741845,1.99031692572366,5.69986150829892,0,0.655894752046633,1.82619339266434,2.478587984798,1.97186921772569,2.43799298746888,7.36867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| ||
|short_description=p3@ALDH1L2 | |short_description=p3@ALDH1L2 | ||
}} | }} |
Latest revision as of 01:10, 16 September 2015
Short description: | p3@ALDH1L2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ALDH1L2_5end |
Coexpression cluster: | C2179_Preadipocyte_myeloma_Fibroblast_Adipocyte_Multipotent_neurofibroma_Olfactory |
Association with transcript: | 11bp_to_ENST00000424857, NM_001034173, NR_027752, uc001tlc.2, uc009zup.2_5end |
EntrezGene: | ALDH1L2 |
HGNC: | 26777 |
UniProt: | B4DTU7Q3SY69 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.03e-28 | 76 |
multi fate stem cell | 1.52e-14 | 427 |
somatic stem cell | 2.93e-14 | 433 |
muscle precursor cell | 1.92e-13 | 58 |
myoblast | 1.92e-13 | 58 |
multi-potent skeletal muscle stem cell | 1.92e-13 | 58 |
stem cell | 5.82e-13 | 441 |
muscle cell | 1.25e-12 | 55 |
skin fibroblast | 2.69e-12 | 23 |
electrically responsive cell | 2.07e-10 | 61 |
electrically active cell | 2.07e-10 | 61 |
smooth muscle cell | 5.34e-08 | 43 |
smooth muscle myoblast | 5.34e-08 | 43 |
vascular associated smooth muscle cell | 5.11e-07 | 32 |
cardiocyte | 9.71e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.76e-14 | 73 |
somite | 1.77e-14 | 71 |
presomitic mesoderm | 1.77e-14 | 71 |
presumptive segmental plate | 1.77e-14 | 71 |
dermomyotome | 1.77e-14 | 71 |
trunk paraxial mesoderm | 1.77e-14 | 71 |
paraxial mesoderm | 5.14e-14 | 72 |
presumptive paraxial mesoderm | 5.14e-14 | 72 |
skeletal muscle tissue | 2.91e-12 | 62 |
striated muscle tissue | 2.91e-12 | 62 |
myotome | 2.91e-12 | 62 |
multilaminar epithelium | 4.14e-12 | 83 |
muscle tissue | 5.94e-12 | 64 |
musculature | 5.94e-12 | 64 |
musculature of body | 5.94e-12 | 64 |
epithelial vesicle | 1.54e-11 | 78 |
integument | 1.77e-10 | 46 |
integumental system | 1.77e-10 | 46 |
skin of body | 1.11e-09 | 41 |
surface structure | 3.40e-09 | 99 |
connective tissue | 3.22e-07 | 371 |
trunk | 3.70e-07 | 199 |
trunk mesenchyme | 7.80e-07 | 122 |