FFCP PHASE1:Hg19::chr3:154798096..154798115,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4311 | |EntrezGene=4311 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7154 | |HGNC=7154 | ||
|TSSclassifier=strong | |||
|UniProt=P08473 | |UniProt=P08473 | ||
|association_with_transcript=17bp_to_NM_007289,uc003fae.1_5end | |association_with_transcript=17bp_to_NM_007289,uc003fae.1_5end | ||
|cluster_id=chr3:154798096..154798115,+ | |||
|coexpression_cluster_id=C1513 | |coexpression_cluster_id=C1513 | ||
|description=CAGE_peak_3_at_MME_5end | |description=CAGE_peak_3_at_MME_5end | ||
|id=chr3:154798096..154798115,+ | |id=chr3:154798096..154798115,+ | ||
|ontology_enrichment_celltype=CL:0000055!6.32e-22!180;CL:0000057!4.99e-12!75;CL:0000680!8.69e-10!57;CL:0000056!8.69e-10!57;CL:0000355!8.69e-10!57;CL:0000187!1.10e-08!54;CL:0002620!1.49e-08!23;CL:0000393!5.24e-08!60;CL:0000211!5.24e-08!60;CL:0000136!1.71e-07!15;CL:0000183!6.68e-07!59 | |ontology_enrichment_celltype=CL:0000055!6.32e-22!180;CL:0000057!4.99e-12!75;CL:0000680!8.69e-10!57;CL:0000056!8.69e-10!57;CL:0000355!8.69e-10!57;CL:0000187!1.10e-08!54;CL:0002620!1.49e-08!23;CL:0000393!5.24e-08!60;CL:0000211!5.24e-08!60;CL:0000136!1.71e-07!15;CL:0000183!6.68e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002620;1.57e-09;23!CL:0000723;4.43e-09;61!CL:0000134;1.80e-08;55!CL:0000136;5.90e-08;13!CL:0000048;6.47e-08;58!CL:0000034;1.20e-07;69!CL:0000349;9.79e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.01e-12,76;CL:0002620,1.58e-09,23;CL:0000680,1.60e-09,58;CL:0000056,1.60e-09,58;CL:0000355,1.60e-09,58;CL:0000048,1.64e-09,427;CL:0000034,3.82e-09,441;CL:0000723,5.18e-09,433;CL:0000136,5.64e-09,15;CL:0000187,2.72e-08,55;CL:0000393,5.23e-08,61;CL:0000211,5.23e-08,61;CL:0000349,9.89e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!9.31e-13!83;UBERON:0002329!9.31e-13!83;UBERON:0003077!9.31e-13!83;UBERON:0003059!9.31e-13!83;UBERON:0007282!9.31e-13!83;UBERON:0009618!9.31e-13!83;UBERON:0007285!9.31e-13!83;UBERON:0004290!2.43e-11!70;UBERON:0005256!1.93e-10!143;UBERON:0000486!4.51e-10!82;UBERON:0003102!1.59e-09!95;UBERON:0002385!2.14e-09!63;UBERON:0001015!2.14e-09!63;UBERON:0000383!2.14e-09!63;UBERON:0002100!3.76e-09!216;UBERON:0001134!5.86e-09!61;UBERON:0002036!5.86e-09!61;UBERON:0003082!5.86e-09!61;UBERON:0002199!1.31e-07!45;UBERON:0002416!1.31e-07!45;UBERON:0000475!9.23e-07!365 | |ontology_enrichment_uberon=UBERON:0000914!9.31e-13!83;UBERON:0002329!9.31e-13!83;UBERON:0003077!9.31e-13!83;UBERON:0003059!9.31e-13!83;UBERON:0007282!9.31e-13!83;UBERON:0009618!9.31e-13!83;UBERON:0007285!9.31e-13!83;UBERON:0004290!2.43e-11!70;UBERON:0005256!1.93e-10!143;UBERON:0000486!4.51e-10!82;UBERON:0003102!1.59e-09!95;UBERON:0002385!2.14e-09!63;UBERON:0001015!2.14e-09!63;UBERON:0000383!2.14e-09!63;UBERON:0002100!3.76e-09!216;UBERON:0001134!5.86e-09!61;UBERON:0002036!5.86e-09!61;UBERON:0003082!5.86e-09!61;UBERON:0002199!1.31e-07!45;UBERON:0002416!1.31e-07!45;UBERON:0000475!9.23e-07!365 | ||
|ontology_enrichment_uberon_v019=UBERON:0002385;4.48e-07;31!UBERON:0001015;4.48e-07;31!UBERON:0000383;4.48e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.92e-11,73;UBERON:0002329,2.12e-11,71;UBERON:0003059,2.12e-11,71;UBERON:0007282,2.12e-11,71;UBERON:0004290,2.12e-11,71;UBERON:0009618,2.12e-11,71;UBERON:0003077,5.17e-11,72;UBERON:0007285,5.17e-11,72;UBERON:0000486,4.04e-10,83;UBERON:0002199,3.39e-09,46;UBERON:0002416,3.39e-09,46;UBERON:0003104,4.11e-09,160;UBERON:0009142,4.11e-09,160;UBERON:0007503,5.93e-09,78;UBERON:0005256,8.22e-09,122;UBERON:0002385,9.26e-09,64;UBERON:0001015,9.26e-09,64;UBERON:0000383,9.26e-09,64;UBERON:0003102,1.24e-08,99;UBERON:0001134,1.44e-08,62;UBERON:0002036,1.44e-08,62;UBERON:0003082,1.44e-08,62;UBERON:0002100,1.62e-07,199;UBERON:0002097,2.24e-07,41 | |||
|phase1_expression=59.408830021472,98.9144420376342,12.9678051768293,21.0153926541574,3.12872766099101,0,81.0559610138594,19.5833160762318,20.3724789995874,0.245733936501509,0,7.8638893966862,0.527533956456907,2.10402800032079,0.994192127183747,1.34465029290355,3.61616716814386,2.92124036154949,2.43966399395253,0,0,0.313454721478088,0,0,0.753255837568817,0,0,0,0,0,0.464448369948228,0,0,0,2.78881922089086,3.83856927716038,1.46800219667424,0,0,0,0,0,0,0.436194716338694,0,0.727752183563449,0.232429036905685,0,0,0.575384784644301,0,0.945928919554341,0.344745680736619,0,0,0.752969358170419,0,0,0,0,0,0,0,0.852449501065388,0.290209238628584,0,0,0,0,0.217188844705117,1.21079900526674,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0.546138611262131,0.889509253863555,0,0,0,0,0,0,0,0,1.32171328579026,1.12101712596307,1.58030450865046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.301150238155546,0,0,0.710331756132051,0,0,0,0,2.43806866313962,1.34140171940727,4.60305222636709,0,0.50133791063589,1.01392563272577,0,0,0.756278537312543,0.221729397462564,0.263504357079378,11.853606332543,0,0,0,0.174129737299267,0,0.953962497221368,0,0,0,1.72046919021225,0,0,0,0,0,0,1.06729878806013,0.33472061276467,0.402829317109147,0,0.24406205754817,0,0,0.17859945656816,0,0,0,0,0.183201743930407,9.22462922052443,50.4114343392823,0,0,0.506522046658319,6.09082231740807,2.86836620748814,1.06400514659507,0,0,0.49333509683432,9.02512002659322,4.31074150623002,3.92308567472301,0,0,8.20125011418288,31.5281677598624,6.27519003698894,19.5777771522859,20.6684717613026,13.9210732156593,11.2360645361799,4.28723759635276,4.42203542322365,3.82305390350332,60.5881457213847,13.5996811103206,0.910161361938026,0,9.25848626747364,6.25592599359821,9.42017992646222,2.63386572528503,0.612975591598039,10.5166641234618,1.24775401476023,3.94657198515496,44.2063794854435,36.2403550982851,2.10063767259082,6.59536187126009,15.973713482829,22.3340227597908,11.3080142601648,19.7797120477233,2.01947019395292,15.2802831746217,0.969876340912871,3.90510551768276,3.22406714328449,2.7129694769678,1.35282597214308,1.63647672354501,0,1.09776335516636,0.397589304964456,0.929551542956147,1.24393266018445,0.756962552626885,0.72995471815166,15.6449532329816,3.21620469096443,0,37.6138021705903,31.7626971934618,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.4115740113314,0,1.26755034821831,0,1.18157981336281,4.41463099414651,0.737930631258681,18.3577557019422,0,0,0,2.68506490959736,7.16778271682714,1.03993478527958,0,0.115930404975077,0.587043471179108,0,0,0,0,0,0,0.234004265139238,0,0.93733833986777,0.839910640994298,0.283550194484773,0.895585227028483,0.871901815541886,0,0,0.088048434013226,0.207328115540772,0,0.12624243342638,17.7159125075152,16.4255022990059,1.17217447210047,3.4214489204541,3.90744472272629,62.7716990893787,3.42991719156694,0.224262168690721,0,0.2933531432838,20.8127462370022,7.15312891703765,12.67954128834,20.7431730936199,27.0419335969552,0.771622122786426,0,0.532844358032199,25.0211488901758,209.994561286488,42.8084975126,13.0294473717494,29.1421397968888,76.0273798016092,0,0,0,0,0,0,0,0,0,13.75422413342,4.10952645100767,56.0460814940873,0,0,0,0,0.254094624222463,0,0,0,0,89.8808428736619,50.8574480646842,123.081407490503,1.2269149171914,2.00068208423871,6.51036056879365,0.207970861530807,1.78428988797162,4.41566762095017,0.702848489956279,27.9879872746779,25.0148254461583,7.24311499047534,1.32845119707087,0.553107505625109,136.146623871486,0.391602314925481,0,0,0.862856803274467,0,3.33440328590885,1.66435439510497,9.37409909322009,44.6594054073798,35.1427918829663,49.676836714654,9.86671449268897,29.1673131968021,0.64341568457443,0,1.85051632563187,1.59805552781814,4.27061211271807,1.03850885836724,3.02146983995894,0.725156697549733,1.20303882181971,1.38121483403844,6.54442354538258,3.09554985611419,11.8011973463482,3.15839729035188,10.397070509096,0,0,2.21658420675039,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,3.33385162651306,2.29610251989794,7.80908147194327,4.43076350085206,4.67004270573551,5.85817449436175,0.574265537996172,1.30012049207304,1.6068392984416,11.4071447584704,10.1672087295665,14.8898564484346,20.9511590176486,142.654085185067,74.5385806719135,8.86356925127449,6.49933860221183,0,0,0,0.10115778085555,0.929691098594572,32.7404840703866,3.485186350803,0.616067160352178,1.06461206063404,2.60979897622522,0.9266210955196,0,8.18748412591268,12.0224181393116,19.8255401680778,1.02359116524534,13.6940476170855,0.318203247925937,1.56989728039846,55.4007169356609,24.4337956465089,9.66061699234629,1.41527737101321,0,0.421258456238981,1.95053495635836,10.2359665645139,4.22600587027022,10.7834930012309,13.8577323314639,0,1.10273068709225,0,0.876901770507525,0.578775534266688,13.1178950409327,0.202910376962704,1.54911749049875,0.281695602532241,223.0046526773,532.902798455169,0,8.51426553769435,2.32218398827431,0.658589785919804,2.27683904259429,2.0996083214699,0.192444225451024,0,0,4.33061483573184,0,0,0,0.459446800413919,12.17874262157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| ||
|short_description=p3@MME | |short_description=p3@MME | ||
}} | }} |
Latest revision as of 04:51, 16 September 2015
Short description: | p3@MME |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MME_5end |
Coexpression cluster: | C1513_Smooth_Neutrophils_Eosinophils_Pancreatic_Mesenchymal_Skeletal_mesenchymal |
Association with transcript: | 17bp_to_NM_007289, uc003fae.1_5end |
EntrezGene: | MME |
HGNC: | 7154 |
UniProt: | P08473 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.01e-12 | 76 |
skin fibroblast | 1.58e-09 | 23 |
muscle precursor cell | 1.60e-09 | 58 |
myoblast | 1.60e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.60e-09 | 58 |
multi fate stem cell | 1.64e-09 | 427 |
stem cell | 3.82e-09 | 441 |
somatic stem cell | 5.18e-09 | 433 |
fat cell | 5.64e-09 | 15 |
muscle cell | 2.72e-08 | 55 |
electrically responsive cell | 5.23e-08 | 61 |
electrically active cell | 5.23e-08 | 61 |
extraembryonic cell | 9.89e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.92e-11 | 73 |
somite | 2.12e-11 | 71 |
presomitic mesoderm | 2.12e-11 | 71 |
presumptive segmental plate | 2.12e-11 | 71 |
dermomyotome | 2.12e-11 | 71 |
trunk paraxial mesoderm | 2.12e-11 | 71 |
paraxial mesoderm | 5.17e-11 | 72 |
presumptive paraxial mesoderm | 5.17e-11 | 72 |
multilaminar epithelium | 4.04e-10 | 83 |
integument | 3.39e-09 | 46 |
integumental system | 3.39e-09 | 46 |
mesenchyme | 4.11e-09 | 160 |
entire embryonic mesenchyme | 4.11e-09 | 160 |
epithelial vesicle | 5.93e-09 | 78 |
trunk mesenchyme | 8.22e-09 | 122 |
muscle tissue | 9.26e-09 | 64 |
musculature | 9.26e-09 | 64 |
musculature of body | 9.26e-09 | 64 |
surface structure | 1.24e-08 | 99 |
skeletal muscle tissue | 1.44e-08 | 62 |
striated muscle tissue | 1.44e-08 | 62 |
myotome | 1.44e-08 | 62 |
trunk | 1.62e-07 | 199 |
skin of body | 2.24e-07 | 41 |