FFCP PHASE1:Hg19::chr12:111471526..111471541,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23316 | |EntrezGene=23316 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19347 | |HGNC=19347 | ||
|TSSclassifier=strong | |||
|UniProt=O14529 | |UniProt=O14529 | ||
|association_with_transcript=-286bp_to_ENST00000261726,NM_015267_5end | |association_with_transcript=-286bp_to_ENST00000261726,NM_015267_5end | ||
|cluster_id=chr12:111471526..111471541,+ | |||
|coexpression_cluster_id=C214 | |||
|description=CAGE_peak_1_at_CUX2_5end | |description=CAGE_peak_1_at_CUX2_5end | ||
|id=chr12:111471526..111471541,+ | |id=chr12:111471526..111471541,+ | ||
|ontology_enrichment_celltype=CL:0000540!2.01e-16!6;CL:0000031!2.01e-16!6;CL:0000404!2.01e-16!6;CL:0000047!2.34e-16!8;CL:0002322!7.88e-13!5;CL:0000133!8.00e-07!59 | |ontology_enrichment_celltype=CL:0000540!2.01e-16!6;CL:0000031!2.01e-16!6;CL:0000404!2.01e-16!6;CL:0000047!2.34e-16!8;CL:0002322!7.88e-13!5;CL:0000133!8.00e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000540;1.06e-36;6!CL:0000404;1.06e-36;6!CL:0002319;2.35e-11;25!CL:0000333;8.32e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.81e-39,8;CL:0000540,9.82e-37,6;CL:0000031,9.82e-37,6;CL:0000404,9.82e-37,6;CL:0002319,2.32e-11,25;CL:0000133,2.55e-10,59;CL:0000221,2.79e-08,72 | |||
|ontology_enrichment_development_v019=CL:0000031;1.06e-36;6!UBERON:0005754;7.88e-10;1 | |||
|ontology_enrichment_disease=DOID:3095!1.32e-15!22;DOID:2994!1.32e-15!22;DOID:171!2.01e-11!10;DOID:169!8.52e-07!6 | |ontology_enrichment_disease=DOID:3095!1.32e-15!22;DOID:2994!1.32e-15!22;DOID:171!2.01e-11!10;DOID:169!8.52e-07!6 | ||
|ontology_enrichment_disease_v019=DOID:171;5.38e-14;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,5.48e-14,10 | |||
|ontology_enrichment_uberon=UBERON:0000073!7.89e-27!94;UBERON:0001016!7.89e-27!94;UBERON:0001950!1.01e-23!20;UBERON:0005743!1.62e-23!86;UBERON:0001017!1.81e-23!82;UBERON:0002619!2.66e-21!22;UBERON:0002020!9.10e-21!34;UBERON:0003528!9.10e-21!34;UBERON:0001869!5.51e-20!32;UBERON:0001893!1.47e-18!34;UBERON:0000956!2.25e-18!25;UBERON:0000203!2.25e-18!25;UBERON:0002780!2.60e-18!41;UBERON:0001890!2.60e-18!41;UBERON:0006240!2.60e-18!41;UBERON:0003080!9.30e-18!42;UBERON:0000924!1.55e-17!173;UBERON:0006601!1.55e-17!173;UBERON:0002791!4.64e-17!33;UBERON:0001049!4.78e-16!57;UBERON:0005068!4.78e-16!57;UBERON:0006241!4.78e-16!57;UBERON:0007135!4.78e-16!57;UBERON:0002616!2.64e-15!59;UBERON:0004121!4.76e-15!169;UBERON:0000955!8.53e-15!69;UBERON:0006238!8.53e-15!69;UBERON:0002346!1.78e-14!90;UBERON:0003056!3.05e-13!61;UBERON:0001872!3.74e-13!5;UBERON:0003075!1.01e-11!86;UBERON:0007284!1.01e-11!86;UBERON:0000033!2.21e-09!123;UBERON:0007023!9.76e-09!115;UBERON:0000153!1.27e-08!129;UBERON:0007811!1.27e-08!129;UBERON:0002021!2.00e-08!5;UBERON:0000013!3.62e-08!5;UBERON:0002410!3.62e-08!5;UBERON:0003135!1.43e-07!11;UBERON:0000473!1.59e-07!8 | |ontology_enrichment_uberon=UBERON:0000073!7.89e-27!94;UBERON:0001016!7.89e-27!94;UBERON:0001950!1.01e-23!20;UBERON:0005743!1.62e-23!86;UBERON:0001017!1.81e-23!82;UBERON:0002619!2.66e-21!22;UBERON:0002020!9.10e-21!34;UBERON:0003528!9.10e-21!34;UBERON:0001869!5.51e-20!32;UBERON:0001893!1.47e-18!34;UBERON:0000956!2.25e-18!25;UBERON:0000203!2.25e-18!25;UBERON:0002780!2.60e-18!41;UBERON:0001890!2.60e-18!41;UBERON:0006240!2.60e-18!41;UBERON:0003080!9.30e-18!42;UBERON:0000924!1.55e-17!173;UBERON:0006601!1.55e-17!173;UBERON:0002791!4.64e-17!33;UBERON:0001049!4.78e-16!57;UBERON:0005068!4.78e-16!57;UBERON:0006241!4.78e-16!57;UBERON:0007135!4.78e-16!57;UBERON:0002616!2.64e-15!59;UBERON:0004121!4.76e-15!169;UBERON:0000955!8.53e-15!69;UBERON:0006238!8.53e-15!69;UBERON:0002346!1.78e-14!90;UBERON:0003056!3.05e-13!61;UBERON:0001872!3.74e-13!5;UBERON:0003075!1.01e-11!86;UBERON:0007284!1.01e-11!86;UBERON:0000033!2.21e-09!123;UBERON:0007023!9.76e-09!115;UBERON:0000153!1.27e-08!129;UBERON:0007811!1.27e-08!129;UBERON:0002021!2.00e-08!5;UBERON:0000013!3.62e-08!5;UBERON:0002410!3.62e-08!5;UBERON:0003135!1.43e-07!11;UBERON:0000473!1.59e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0000922;4.95e-11;49!UBERON:0000998;7.88e-10;1!UBERON:0006868;7.88e-10;1!UBERON:0002346;1.42e-09;4!UBERON:0000923;1.42e-09;4!UBERON:0010316;1.42e-09;4!UBERON:0005291;1.42e-09;4!UBERON:0001872;5.99e-08;5!UBERON:0002050;7.90e-08;5!UBERON:0005423;7.90e-08;5!UBERON:0000013;8.32e-08;5!UBERON:0002410;8.32e-08;5!UBERON:0001950;5.86e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.61e-14,89;UBERON:0001017,4.02e-11,81;UBERON:0000998,5.79e-10,1;UBERON:0006868,5.79e-10,1;UBERON:0004121,9.20e-09,171;UBERON:0000924,9.20e-09,171;UBERON:0006601,9.20e-09,171;UBERON:0001872,5.69e-08,5;UBERON:0000013,7.77e-08,5;UBERON:0002410,7.77e-08,5;UBERON:0001950,5.77e-07,20 | |||
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| ||
|short_description=p1@CUX2 | |short_description=p1@CUX2 | ||
}} | }} |
Latest revision as of 09:24, 16 September 2015
Short description: | p1@CUX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CUX2_5end |
Coexpression cluster: | C214_Neurons_Neural_duodenum_temporal_occipital_parietal_brain |
Association with transcript: | -286bp_to_ENST00000261726, NM_015267_5end |
EntrezGene: | CUX2 |
HGNC: | 19347 |
UniProt: | O14529 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.81e-39 | 8 |
neuron | 9.82e-37 | 6 |
neuroblast | 9.82e-37 | 6 |
electrically signaling cell | 9.82e-37 | 6 |
neural cell | 2.32e-11 | 25 |
neurectodermal cell | 2.55e-10 | 59 |
ectodermal cell | 2.79e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.61e-14 | 89 |
central nervous system | 4.02e-11 | 81 |
seminal vesicle | 5.79e-10 | 1 |
seminal fluid secreting gland | 5.79e-10 | 1 |
ectoderm-derived structure | 9.20e-09 | 171 |
ectoderm | 9.20e-09 | 171 |
presumptive ectoderm | 9.20e-09 | 171 |
parietal lobe | 5.69e-08 | 5 |
sympathetic nervous system | 7.77e-08 | 5 |
autonomic nervous system | 7.77e-08 | 5 |
neocortex | 5.77e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 5.48e-14 | 10 |