FFCP PHASE1:Hg19::chr6:160101253..160101264,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6648 | |EntrezGene=6648 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11180 | |HGNC=11180 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=138bp_to_uc003qsf.3_5end | |||
|cluster_id=chr6:160101253..160101264,- | |||
|coexpression_cluster_id=C107 | |||
|description=CAGE_peak_38_at_SOD2_5end | |||
|id=chr6:160101253..160101264,- | |||
|ontology_enrichment_celltype=CL:0002057!1.85e-31!42;CL:0000860!1.38e-28!45;CL:0002194!5.47e-21!63;CL:0000576!5.47e-21!63;CL:0000040!5.47e-21!63;CL:0000559!5.47e-21!63;CL:0000766!6.97e-21!76;CL:0002009!5.42e-20!65;CL:0000839!9.21e-18!70;CL:0000557!2.35e-17!71;CL:0000763!2.83e-13!112;CL:0000049!2.83e-13!112;CL:0000738!3.86e-08!140;CL:0002087!6.91e-08!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.71e-49;33!CL:0002057;7.71e-49;33!CL:0000473;3.27e-39;39!CL:0000234;3.27e-39;39!CL:0000576;5.61e-22;48!CL:0000775;6.91e-19;3!CL:0000766;1.16e-18;69!CL:0000094;3.19e-12;8!CL:0000763;5.67e-11;100!CL:0000081;6.42e-09;11!CL:0002087;1.72e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.55e-42,42;CL:0002057,2.55e-42,42;CL:0000473,4.45e-41,48;CL:0000234,4.45e-41,48;CL:0000766,1.31e-38,72;CL:0002194,4.68e-32,59;CL:0000576,4.68e-32,59;CL:0000040,4.68e-32,59;CL:0000559,4.68e-32,59;CL:0002009,6.83e-31,61;CL:0000839,2.76e-28,66;CL:0000557,8.26e-28,67;CL:0000763,2.78e-24,108;CL:0000049,2.78e-24,108;CL:0000775,1.16e-18,3;CL:0000738,2.44e-18,136;CL:0002032,9.06e-15,161;CL:0000837,9.06e-15,161;CL:0002087,1.24e-14,115;CL:0000037,5.85e-14,168;CL:0002031,7.33e-14,120;CL:0000988,5.19e-13,177;CL:0000094,4.41e-12,8;CL:0000081,8.08e-09,11;CL:0000134,1.62e-08,354;CL:0002320,3.06e-08,361;CL:0000219,2.87e-07,386;CL:0000048,8.08e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;6.65e-30;42!UBERON:0010226;4.20e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.54e-14!80;UBERON:0002405!8.35e-13!115;UBERON:0001474!1.88e-12!86;UBERON:0002193!1.04e-11!112;UBERON:0004765!1.68e-11!101;UBERON:0001434!1.68e-11!101;UBERON:0002390!3.21e-11!102;UBERON:0003061!3.21e-11!102;UBERON:0002204!9.25e-10!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0002084;4.20e-07;1!UBERON:0002082;4.20e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.37e-24,76;UBERON:0001474,4.72e-22,82;UBERON:0002405,2.65e-21,93;UBERON:0002390,6.29e-20,98;UBERON:0003061,6.29e-20,98;UBERON:0002193,8.66e-20,108;UBERON:0004765,9.29e-20,90;UBERON:0001434,1.67e-19,100;UBERON:0002204,2.91e-11,167;UBERON:0003081,1.70e-08,203;UBERON:0002384,7.28e-08,371;UBERON:0002084,4.60e-07,1;UBERON:0002082,4.60e-07,1;UBERON:0010226,4.60e-07,1 | |||
|phase1_expression=0,0.428201047781966,0.422863212287913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.975865597581014,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0.401088894940283,0.868043482863407,0,0,0,0.145398238779565,0,0,0.697287110717054,0.822335776043652,1.85823822537062,1.43846196161075,1.2808035326455,0.945928919554341,2.06847408441971,1.93645405075148,2.70852973188684,0.564727018627814,0.818718450173537,1.57306439111559,1.53041946185451,0.962787081228281,3.83602275479425,0.659702600373432,0.997318288108159,0.852449501065388,5.22376629531451,2.8369261234557,3.11411124497787,1.50749199154046,1.5644487552606,1.08594422352558,2.42159801053347,2.57794345191295,3.79754864929061,0,0,0,0,0.150176892841506,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0.973269740605272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0.12663051166458,0.264818361626438,0,0,0,0,0,0,0.269421344139376,0,0,0,0,0,0,0.298897361103602,0,0,0,0,0,0,0,0.494533858557114,0,0,0,0,0,0,0,0.150238058906597,0,0,0.213557388818567,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0.232387885739037,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53510069643662,1.96565443335525,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721832238805369,2.31492756288305,0.951270761172991,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0.502257091432126,4.21667878966063,0,0,0,0,0.61642896765115,0.358121926479791,0,0,0,0,0,0,0,0,0.637938751653163,2.24702107184155,5.9832291840805,1.24324654030811,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0.393373244878272,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0.193341436584244,0,0.15350367472613,0,0,0,0.0852266274161009,0,0,0,0.127612712494584,0,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0.487426979262569,0,0,0.141405431953713,0,0,0.66343897524122,0.438450885253763,0,0,0,0,0,0,0,0,0,0.844430541190656,1.64647446479951,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,1.29694662238543,0,0.79312517629427,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0.280797178113459,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0.994147647766298,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0.569710279235006,0,0,0.108647371922008,0,0,1.06606955203727,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0.0984274815147488,0,0.795229689809303,0,0,0,0,0,0,0.0607495566580247,0,0.315222829196793,0.104909176269996,0,0,0,0.714695326373367,1.32418394073086,0,0,0,0,0,0,0,0,0.439656701034247,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0.544017803369474,0,0.612691153526923,0,0,0.886068179966986,0.122026264901963,0.250381861413,0,0,0,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0.449803112163605,0.155262956876259,0,0,0,0,0,0.406870733204662,0,0.214821114084977,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0.179088841081487,0.308801447160972,0.219284049578707,0,0,0,0,0,0.303859956177382,0,0,0.132864840313363,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,1.43325506366115,0,0,0,0,0,0.828864656652147,0.17071847709395,0,0,0,0.0852134047591577,0,0,0.62041277132864,0,0.223710863595585,0,0,0.647428837187895,0.410651227424988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0.0802413666891683,0,0,0,0,0,0,0,1.11598505450025,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0.215166616178029,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0.428201047781966,0.422863212287913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.975865597581014,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0.401088894940283,0.868043482863407,0,0,0,0.145398238779565,0,0,0.697287110717054,0.822335776043652,1.85823822537062,1.43846196161075,1.2808035326455,0.945928919554341,2.06847408441971,1.93645405075148,2.70852973188684,0.564727018627814,0.818718450173537,1.57306439111559,1.53041946185451,0.962787081228281,3.83602275479425,0.659702600373432,0.997318288108159,0.852449501065388,5.22376629531451,2.8369261234557,3.11411124497787,1.50749199154046,1.5644487552606,1.08594422352558,2.42159801053347,2.57794345191295,3.79754864929061,0,0,0,0,0.150176892841506,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0.973269740605272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0.12663051166458,0.264818361626438,0,0,0,0,0,0,0.269421344139376,0,0,0,0,0,0,0.298897361103602,0,0,0,0,0,0,0,0.494533858557114,0,0,0,0,0,0,0,0.150238058906597,0,0,0.213557388818567,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0.232387885739037,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53510069643662,1.96565443335525,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721832238805369,2.31492756288305,0.951270761172991,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0.502257091432126,4.21667878966063,0,0,0,0,0.61642896765115,0.358121926479791,0,0,0,0,0,0,0,0,0.637938751653163,2.24702107184155,5.9832291840805,1.24324654030811,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0.393373244878272,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0.193341436584244,0,0.15350367472613,0,0,0,0.0852266274161009,0,0,0,0.127612712494584,0,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0.487426979262569,0,0,0.141405431953713,0,0,0.66343897524122,0.438450885253763,0,0,0,0,0,0,0,0,0,0.844430541190656,1.64647446479951,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,1.29694662238543,0,0.79312517629427,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0.280797178113459,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0.994147647766298,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0.569710279235006,0,0,0.108647371922008,0,0,1.06606955203727,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0.0984274815147488,0,0.795229689809303,0,0,0,0,0,0,0.0607495566580247,0,0.315222829196793,0.104909176269996,0,0,0,0.714695326373367,1.32418394073086,0,0,0,0,0,0,0,0,0.439656701034247,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0.544017803369474,0,0.612691153526923,0,0,0.886068179966986,0.122026264901963,0.250381861413,0,0,0,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0.449803112163605,0.155262956876259,0,0,0,0,0,0.406870733204662,0,0.214821114084977,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0.179088841081487,0.308801447160972,0.219284049578707,0,0,0,0,0,0.303859956177382,0,0,0.132864840313363,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,1.43325506366115,0,0,0,0,0,0.828864656652147,0.17071847709395,0,0,0,0.0852134047591577,0,0,0.62041277132864,0,0.223710863595585,0,0,0.647428837187895,0.410651227424988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0.0802413666891683,0,0,0,0,0,0,0,1.11598505450025,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0.215166616178029,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p38@SOD2 | |||
}} | }} |
Latest revision as of 14:04, 16 September 2015
Short description: | p38@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_38_at_SOD2_5end |
Coexpression cluster: | C107_Neutrophils_CD14_Eosinophils_Monocytederived_Whole_Peripheral_blood |
Association with transcript: | 138bp_to_uc003qsf.3_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.55e-42 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.55e-42 | 42 |
defensive cell | 4.45e-41 | 48 |
phagocyte | 4.45e-41 | 48 |
myeloid leukocyte | 1.31e-38 | 72 |
monopoietic cell | 4.68e-32 | 59 |
monocyte | 4.68e-32 | 59 |
monoblast | 4.68e-32 | 59 |
promonocyte | 4.68e-32 | 59 |
macrophage dendritic cell progenitor | 6.83e-31 | 61 |
myeloid lineage restricted progenitor cell | 2.76e-28 | 66 |
granulocyte monocyte progenitor cell | 8.26e-28 | 67 |
myeloid cell | 2.78e-24 | 108 |
common myeloid progenitor | 2.78e-24 | 108 |
neutrophil | 1.16e-18 | 3 |
leukocyte | 2.44e-18 | 136 |
hematopoietic oligopotent progenitor cell | 9.06e-15 | 161 |
hematopoietic multipotent progenitor cell | 9.06e-15 | 161 |
nongranular leukocyte | 1.24e-14 | 115 |
hematopoietic stem cell | 5.85e-14 | 168 |
hematopoietic lineage restricted progenitor cell | 7.33e-14 | 120 |
hematopoietic cell | 5.19e-13 | 177 |
granulocyte | 4.41e-12 | 8 |
blood cell | 8.08e-09 | 11 |
mesenchymal cell | 1.62e-08 | 354 |
connective tissue cell | 3.06e-08 | 361 |
motile cell | 2.87e-07 | 386 |
multi fate stem cell | 8.08e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.37e-24 | 76 |
bone element | 4.72e-22 | 82 |
immune system | 2.65e-21 | 93 |
hematopoietic system | 6.29e-20 | 98 |
blood island | 6.29e-20 | 98 |
hemolymphoid system | 8.66e-20 | 108 |
skeletal element | 9.29e-20 | 90 |
skeletal system | 1.67e-19 | 100 |
musculoskeletal system | 2.91e-11 | 167 |
lateral plate mesoderm | 1.70e-08 | 203 |
connective tissue | 7.28e-08 | 371 |
heart left ventricle | 4.60e-07 | 1 |
cardiac ventricle | 4.60e-07 | 1 |
future cardiac ventricle | 4.60e-07 | 1 |