FFCP PHASE1:Hg19::chr6:160101648..160101695,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6648 | |EntrezGene=6648 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11180 | |HGNC=11180 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-245bp_to_uc003qsf.3_5end | |association_with_transcript=-245bp_to_uc003qsf.3_5end | ||
|cluster_id=chr6:160101648..160101695,- | |||
|coexpression_cluster_id=C954 | |coexpression_cluster_id=C954 | ||
|description=CAGE_peak_7_at_SOD2_5end | |description=CAGE_peak_7_at_SOD2_5end | ||
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|ontology_enrichment_celltype=CL:0002057!1.73e-16!42;CL:0000766!4.77e-16!76;CL:0002194!5.11e-16!63;CL:0000576!5.11e-16!63;CL:0000040!5.11e-16!63;CL:0000559!5.11e-16!63;CL:0000860!1.69e-15!45;CL:0002009!9.38e-15!65;CL:0000839!1.02e-12!70;CL:0000557!2.27e-11!71 | |ontology_enrichment_celltype=CL:0002057!1.73e-16!42;CL:0000766!4.77e-16!76;CL:0002194!5.11e-16!63;CL:0000576!5.11e-16!63;CL:0000040!5.11e-16!63;CL:0000559!5.11e-16!63;CL:0000860!1.69e-15!45;CL:0002009!9.38e-15!65;CL:0000839!1.02e-12!70;CL:0000557!2.27e-11!71 | ||
|ontology_enrichment_celltype_v019=CL:0000473;9.20e-19;39!CL:0000234;9.20e-19;39!CL:0000860;2.46e-18;33!CL:0002057;2.46e-18;33!CL:0000576;2.01e-11;48!CL:0000766;2.57e-09;69 | |ontology_enrichment_celltype_v019=CL:0000473;9.20e-19;39!CL:0000234;9.20e-19;39!CL:0000860;2.46e-18;33!CL:0002057;2.46e-18;33!CL:0000576;2.01e-11;48!CL:0000766;2.57e-09;69 | ||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.29e-23,48;CL:0000234,2.29e-23,48;CL:0000766,2.95e-20,72;CL:0002194,1.52e-19,59;CL:0000576,1.52e-19,59;CL:0000040,1.52e-19,59;CL:0000559,1.52e-19,59;CL:0000860,2.83e-19,42;CL:0002057,2.83e-19,42;CL:0002009,2.65e-18,61;CL:0000839,1.45e-15,66;CL:0000557,4.49e-15,67;CL:0000763,5.32e-09,108;CL:0000049,5.32e-09,108 | |||
|ontology_enrichment_development_v019=CL:0002057;2.23e-14;42 | |ontology_enrichment_development_v019=CL:0002057;2.23e-14;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.27e-10!112;UBERON:0007023!6.64e-10!115;UBERON:0002371!1.02e-09!80;UBERON:0002390!1.84e-09!102;UBERON:0003061!1.84e-09!102;UBERON:0002405!2.41e-09!115;UBERON:0002204!3.02e-09!167;UBERON:0001474!9.33e-09!86;UBERON:0004765!2.35e-08!101;UBERON:0001434!2.35e-08!101 | |ontology_enrichment_uberon=UBERON:0002193!2.27e-10!112;UBERON:0007023!6.64e-10!115;UBERON:0002371!1.02e-09!80;UBERON:0002390!1.84e-09!102;UBERON:0003061!1.84e-09!102;UBERON:0002405!2.41e-09!115;UBERON:0002204!3.02e-09!167;UBERON:0001474!9.33e-09!86;UBERON:0004765!2.35e-08!101;UBERON:0001434!2.35e-08!101 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.20e-13,76;UBERON:0002204,4.11e-13,167;UBERON:0002193,5.51e-13,108;UBERON:0002390,1.37e-12,98;UBERON:0003061,1.37e-12,98;UBERON:0004765,1.13e-11,90;UBERON:0002405,1.16e-11,93;UBERON:0001474,1.16e-11,82;UBERON:0001434,1.98e-11,100;UBERON:0000926,1.76e-08,315;UBERON:0004120,1.76e-08,315;UBERON:0006603,1.76e-08,315;UBERON:0007023,7.95e-08,114;UBERON:0003081,1.52e-07,203 | |||
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| ||
|short_description=p7@SOD2 | |short_description=p7@SOD2 | ||
}} | }} |
Latest revision as of 14:12, 16 September 2015
Short description: | p7@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SOD2_5end |
Coexpression cluster: | C954_heart_CD14_Neutrophils_Eosinophils_Lymphatic_renal_Monocytederived |
Association with transcript: | -245bp_to_uc003qsf.3_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.29e-23 | 48 |
phagocyte | 2.29e-23 | 48 |
myeloid leukocyte | 2.95e-20 | 72 |
monopoietic cell | 1.52e-19 | 59 |
monocyte | 1.52e-19 | 59 |
monoblast | 1.52e-19 | 59 |
promonocyte | 1.52e-19 | 59 |
classical monocyte | 2.83e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.83e-19 | 42 |
macrophage dendritic cell progenitor | 2.65e-18 | 61 |
myeloid lineage restricted progenitor cell | 1.45e-15 | 66 |
granulocyte monocyte progenitor cell | 4.49e-15 | 67 |
myeloid cell | 5.32e-09 | 108 |
common myeloid progenitor | 5.32e-09 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.20e-13 | 76 |
musculoskeletal system | 4.11e-13 | 167 |
hemolymphoid system | 5.51e-13 | 108 |
hematopoietic system | 1.37e-12 | 98 |
blood island | 1.37e-12 | 98 |
skeletal element | 1.13e-11 | 90 |
immune system | 1.16e-11 | 93 |
bone element | 1.16e-11 | 82 |
skeletal system | 1.98e-11 | 100 |
mesoderm | 1.76e-08 | 315 |
mesoderm-derived structure | 1.76e-08 | 315 |
presumptive mesoderm | 1.76e-08 | 315 |
adult organism | 7.95e-08 | 114 |
lateral plate mesoderm | 1.52e-07 | 203 |