FFCP PHASE1:Hg19::chr13:28543388..28543406,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1045 | |EntrezGene=1045 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=1806 | |HGNC=1806 | ||
|TSSclassifier=strong | |||
|UniProt=Q99626 | |UniProt=Q99626 | ||
|association_with_transcript=-71bp_to_NM_001265,uc001urv.2_5end | |association_with_transcript=-71bp_to_NM_001265,uc001urv.2_5end | ||
|cluster_id=chr13:28543388..28543406,- | |||
|coexpression_cluster_id=C86 | |coexpression_cluster_id=C86 | ||
|description=CAGE_peak_3_at_CDX2_5end | |description=CAGE_peak_3_at_CDX2_5end | ||
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|ontology_enrichment_celltype_v019=CL:0002563;1.16e-21;4!CL:0002253;1.36e-19;2!CL:0002251;1.41e-07;20 | |ontology_enrichment_celltype_v019=CL:0002563;1.16e-21;4!CL:0002253;1.36e-19;2!CL:0002251;1.41e-07;20 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.08e-21,4;CL:0002253,1.24e-19,2;CL:0002251,1.40e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0001045;2.50e-10;1 | |ontology_enrichment_development_v019=UBERON:0001045;2.50e-10;1 | ||
|ontology_enrichment_disease=DOID:3119!1.67e-19!14;DOID:305!6.18e-12!106;DOID:4929!2.09e-08!2;DOID:0050687!2.59e-08!143;DOID:299!3.66e-08!25 | |ontology_enrichment_disease=DOID:3119!1.67e-19!14;DOID:305!6.18e-12!106;DOID:4929!2.09e-08!2;DOID:0050687!2.59e-08!143;DOID:299!3.66e-08!25 | ||
|ontology_enrichment_disease_v019=DOID:3119;3.51e-16;14!DOID:299;6.93e-09;25 | |ontology_enrichment_disease_v019=DOID:3119;3.51e-16;14!DOID:299;6.93e-09;25 | ||
|ontology_enrichment_disease_v019_2=DOID:3119,3.46e-16,14;DOID:299,7.11e-09,25 | |||
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| ||
|short_description=p3@CDX2 | |short_description=p3@CDX2 | ||
}} | }} |
Latest revision as of 23:39, 16 September 2015
Short description: | p3@CDX2 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CDX2_5end |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | -71bp_to_NM_001265, uc001urv.2_5end |
EntrezGene: | CDX2 |
HGNC: | 1806 |
UniProt: | Q99626 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.08e-21 | 4 |
epithelial cell of large intestine | 1.24e-19 | 2 |
epithelial cell of alimentary canal | 1.40e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.38e-83 | 17 |
gastrointestinal system | 2.48e-66 | 25 |
large intestine | 2.22e-52 | 11 |
lower digestive tract | 1.31e-45 | 5 |
rectum | 4.57e-37 | 4 |
colon | 1.86e-36 | 9 |
small intestine | 3.20e-29 | 4 |
intestinal mucosa | 1.08e-21 | 4 |
wall of intestine | 1.08e-21 | 4 |
gastrointestinal system mucosa | 1.08e-21 | 4 |
gastrointestinal system epithelium | 1.08e-21 | 4 |
intestinal epithelium | 1.08e-21 | 4 |
subdivision of digestive tract | 1.74e-19 | 118 |
hindgut | 5.15e-17 | 19 |
digestive system | 2.27e-15 | 145 |
digestive tract | 2.27e-15 | 145 |
primitive gut | 2.27e-15 | 145 |
endoderm-derived structure | 1.12e-13 | 160 |
endoderm | 1.12e-13 | 160 |
presumptive endoderm | 1.12e-13 | 160 |
duodenum | 6.97e-13 | 2 |
epithelium of mucosa | 3.90e-11 | 8 |
vermiform appendix | 2.50e-10 | 1 |
caecum | 2.50e-10 | 1 |
midgut | 2.50e-10 | 1 |
hepatopancreatic ampulla | 3.61e-10 | 1 |
extrahepatic bile duct | 3.61e-10 | 1 |
common bile duct | 3.61e-10 | 1 |
duodenal papilla | 3.61e-10 | 1 |
organ system subdivision | 3.63e-10 | 223 |
simple columnar epithelium | 5.92e-10 | 9 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 3.46e-16 | 14 |
adenocarcinoma | 7.11e-09 | 25 |