FFCP PHASE1:Hg19::chr2:133429062..133429090,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=116372 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28431 | |||
|TSSclassifier=strong | |||
|UniProt=Q8N2G4 | |||
|association_with_transcript=0bp_to_NM_001077427,uc002tto.2_5end | |||
|cluster_id=chr2:133429062..133429090,- | |||
|description=CAGE_peak_2_at_LYPD1_5end | |||
|id=chr2:133429062..133429090,- | |||
|ontology_enrichment_celltype=CL:0000359!5.91e-17!32;CL:0000220!1.01e-13!246;CL:0002321!2.00e-13!248;CL:0000192!4.15e-12!42;CL:0000514!4.15e-12!42;CL:0000222!2.54e-11!119;CL:0000055!4.43e-11!180;CL:0002319!8.71e-10!25;CL:0000393!1.30e-09!60;CL:0000211!1.30e-09!60;CL:0000183!4.22e-09!59;CL:0000187!1.66e-08!54;CL:0000243!1.74e-08!15;CL:0000125!1.74e-08!15;CL:0000030!1.74e-08!15;CL:0000339!1.74e-08!15;CL:0002595!4.02e-08!5;CL:0000680!1.09e-07!57;CL:0000056!1.09e-07!57;CL:0000355!1.09e-07!57;CL:0000133!1.89e-07!59;CL:0000095!2.96e-07!17;CL:0000123!2.96e-07!17;CL:0002594!6.21e-07!4;CL:0000128!7.06e-07!7;CL:0000126!7.06e-07!7;CL:0000127!7.06e-07!7;CL:0002453!7.06e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.42e-44;32!CL:0000192;1.40e-25;43!CL:0002595;6.63e-23;5!CL:0002594;6.30e-19;4!CL:0000187;1.28e-12;55!CL:0000393;5.55e-11;61!CL:0000211;5.55e-11;61!CL:0002539;5.95e-11;10!CL:0002593;1.50e-10;2!CL:0000650;1.97e-10;2!CL:1000500;1.97e-10;2!CL:1000618;1.97e-10;2!CL:1001318;1.97e-10;2!CL:0002173;1.97e-10;2!CL:0002589;1.02e-09;2!CL:1000507;2.10e-07;10!CL:1000494;2.10e-07;10!CL:0002592;5.82e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,4.23e-46,32;CL:0000192,4.00e-33,43;CL:0000514,4.00e-33,43;CL:0000187,6.78e-25,55;CL:0000393,1.29e-24,61;CL:0000211,1.29e-24,61;CL:0000680,2.27e-23,58;CL:0000056,2.27e-23,58;CL:0000355,2.27e-23,58;CL:0002595,9.34e-23,5;CL:0002594,6.33e-19,4;CL:0000222,1.22e-12,121;CL:0002539,6.84e-11,10;CL:0000650,1.68e-10,2;CL:1000500,1.68e-10,2;CL:1000618,1.68e-10,2;CL:1001318,1.68e-10,2;CL:0002173,1.68e-10,2;CL:0002593,1.68e-10,2;CL:0002589,9.39e-10,2;CL:0002321,3.63e-08,250;CL:1000507,1.85e-07,10;CL:1000494,1.85e-07,10;CL:0002592,5.18e-07,3;CL:0002605,9.60e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000514;1.40e-25;43!CL:0000355;7.74e-12;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001637!7.05e-27!42;UBERON:0003509!7.05e-27!42;UBERON:0004572!7.05e-27!42;UBERON:0000025!1.82e-21!194;UBERON:0001981!1.13e-20!60;UBERON:0007500!1.13e-20!60;UBERON:0004537!1.13e-20!60;UBERON:0006965!1.13e-20!60;UBERON:0002049!4.09e-20!79;UBERON:0007798!4.09e-20!79;UBERON:0000055!1.21e-19!69;UBERON:0003914!4.09e-18!118;UBERON:0004111!1.14e-17!241;UBERON:0004573!2.95e-17!33;UBERON:0004571!2.95e-17!33;UBERON:0000477!5.56e-17!286;UBERON:0004872!4.67e-16!84;UBERON:0004535!1.36e-14!110;UBERON:0000119!3.43e-14!312;UBERON:0000483!4.07e-14!309;UBERON:0001009!8.22e-14!113;UBERON:0000481!1.23e-09!347;UBERON:0000490!8.53e-09!138;UBERON:0000947!2.31e-08!21;UBERON:0010191!2.31e-08!21;UBERON:0003834!4.02e-08!5;UBERON:0001533!4.02e-08!5;UBERON:0007625!5.20e-08!11;UBERON:0003498!1.58e-07!5;UBERON:0005985!1.58e-07!5;UBERON:0003075!2.89e-07!86;UBERON:0007284!2.89e-07!86;UBERON:0000073!3.10e-07!94;UBERON:0001016!3.10e-07!94;UBERON:0000475!3.50e-07!365;UBERON:0005743!4.73e-07!86;UBERON:0001310!6.21e-07!4;UBERON:0001134!9.66e-07!61;UBERON:0002036!9.66e-07!61;UBERON:0003082!9.66e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;9.33e-34;42!UBERON:0003509;9.33e-34;42!UBERON:0004572;9.33e-34;42!UBERON:0004573;4.66e-26;33!UBERON:0004571;4.66e-26;33!UBERON:0003834;6.63e-23;5!UBERON:0001533;6.63e-23;5!UBERON:0007500;4.03e-20;56!UBERON:0001981;4.03e-20;56!UBERON:0004537;4.03e-20;56!UBERON:0001310;6.30e-19;4!UBERON:0003914;5.09e-18;74!UBERON:0003513;2.73e-16;7!UBERON:0000055;1.68e-15;65!UBERON:0002049;3.80e-13;75!UBERON:0007798;3.80e-13;75!UBERON:0004237;5.95e-11;10!UBERON:0004695;5.95e-11;10!UBERON:0002111;5.95e-11;10!UBERON:0004178;5.95e-11;10!UBERON:0002456;1.50e-10;2!UBERON:0003567;1.97e-10;2!UBERON:0003838;1.97e-10;2!UBERON:0003586;1.97e-10;2!UBERON:0005169;1.97e-10;2!UBERON:0002321;1.97e-10;2!UBERON:0005215;1.97e-10;2!UBERON:0002303;1.97e-10;2!UBERON:0002319;1.97e-10;2!UBERON:0000025;4.60e-10;93!UBERON:0000078;1.02e-09;2!UBERON:0002012;1.02e-09;2!UBERON:0001529;1.02e-09;2!UBERON:0007204;1.02e-09;2!UBERON:0008886;1.02e-09;2!UBERON:0000947;1.13e-09;21!UBERON:0010191;1.13e-09;21!UBERON:0010260;1.91e-08;9!UBERON:0004535;8.83e-08;109!UBERON:0004211;2.10e-07;10!UBERON:0009773;2.10e-07;10!UBERON:0001231;2.10e-07;10!UBERON:0004810;2.10e-07;10!UBERON:0001135;3.35e-07;15!UBERON:0003498;5.82e-07;3!UBERON:0005985;5.82e-07;3!UBERON:0001621;5.82e-07;3!UBERON:0001009;8.24e-07;112 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,9.39e-47,42;UBERON:0003509,9.39e-47,42;UBERON:0004572,9.39e-47,42;UBERON:0007500,2.14e-38,59;UBERON:0001981,2.14e-38,59;UBERON:0004537,2.14e-38,59;UBERON:0006965,2.14e-38,59;UBERON:0000055,1.53e-32,68;UBERON:0004573,2.97e-31,33;UBERON:0004571,2.97e-31,33;UBERON:0004872,1.48e-30,83;UBERON:0003914,6.05e-30,117;UBERON:0002049,1.27e-27,78;UBERON:0007798,1.27e-27,78;UBERON:0003834,9.34e-23,5;UBERON:0001533,9.34e-23,5;UBERON:0004535,8.80e-22,109;UBERON:0001134,1.44e-21,62;UBERON:0002036,1.44e-21,62;UBERON:0003082,1.44e-21,62;UBERON:0001009,4.94e-21,112;UBERON:0002385,9.41e-21,64;UBERON:0001015,9.41e-21,64;UBERON:0000383,9.41e-21,64;UBERON:0007503,1.99e-20,78;UBERON:0001310,6.33e-19,4;UBERON:0002329,2.92e-18,71;UBERON:0003059,2.92e-18,71;UBERON:0007282,2.92e-18,71;UBERON:0004290,2.92e-18,71;UBERON:0009618,2.92e-18,71;UBERON:0000025,5.82e-18,192;UBERON:0003077,6.05e-18,72;UBERON:0007285,6.05e-18,72;UBERON:0007524,1.23e-17,73;UBERON:0000486,9.19e-17,83;UBERON:0003513,3.47e-16,7;UBERON:0003498,1.88e-14,5;UBERON:0005985,1.88e-14,5;UBERON:0004111,5.71e-14,240;UBERON:0005256,6.02e-14,122;UBERON:0000490,6.20e-13,148;UBERON:0003104,1.02e-12,160;UBERON:0009142,1.02e-12,160;UBERON:0000483,4.74e-11,306;UBERON:0004237,6.84e-11,10;UBERON:0004695,6.84e-11,10;UBERON:0002111,6.84e-11,10;UBERON:0004178,6.84e-11,10;UBERON:0000119,7.23e-11,309;UBERON:0003081,7.69e-11,203;UBERON:0003567,1.68e-10,2;UBERON:0003838,1.68e-10,2;UBERON:0003586,1.68e-10,2;UBERON:0005169,1.68e-10,2;UBERON:0002321,1.68e-10,2;UBERON:0002456,1.68e-10,2;UBERON:0005215,1.68e-10,2;UBERON:0002303,1.68e-10,2;UBERON:0002319,1.68e-10,2;UBERON:0001529,9.39e-10,2;UBERON:0007204,9.39e-10,2;UBERON:0000078,1.22e-09,2;UBERON:0007497,1.22e-09,2;UBERON:0003643,1.22e-09,2;UBERON:0003504,1.22e-09,2;UBERON:0003469,1.22e-09,2;UBERON:0003496,1.22e-09,2;UBERON:0002012,1.22e-09,2;UBERON:0008886,1.22e-09,2;UBERON:0007303,1.22e-09,2;UBERON:0002061,1.22e-09,2;UBERON:0005432,1.22e-09,2;UBERON:0004363,1.22e-09,2;UBERON:0000947,1.25e-09,21;UBERON:0010191,1.25e-09,21;UBERON:0002100,4.29e-09,199;UBERON:0010260,1.92e-08,9;UBERON:0004810,1.85e-07,10;UBERON:0001135,3.66e-07,15;UBERON:0001621,5.18e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0,0,1.23766352960047,0.662794751455832,1.34465029290355,0,1.46062018077475,0.487932798790507,0.861847406537515,0.204000691244253,0,1.71741592278634,1.77936752594749,0.87879847716362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.945348171640679,0.665188192387692,0.966182642624386,0.0654895377488563,0,0,0,0,0,0,0,0,0.39752481473341,0.860234595106124,0.347140501607594,0,0.838998872419812,0.275118041940067,0.417989933073621,0,0.35576626268671,0,0,0,0,0,0,0,0,0,6.13266549863533,1.89853131913626,0.366403487860815,0,0,0,0,5.44511200157693,0.264818361626438,0.573673241497627,4.61068896857864,0,2.1349799145941,1.72667283892012,0,0,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,2.83580457900053,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0.604512589365842,0.508681776931463,0,0,0,0,0,0,0.414644220061482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,1.73895607462615,0.117408694235822,0.288732895522148,0,0.190254152234598,0,1.71697232418975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.205654985406647,0.600686115687835,0,0,0,0.07333828582095,0.258543431515556,0,0,0.531876233169741,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,2.31986643833309,0.670065061337395,0.637938751653163,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,1.03473071292505,0.664225598535437,0.368738337083406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0.519254429183621,0.116210378459959,0,0,0,0.459257792658427,0,0,0,0.616122696835318,0,2.92278449306521,1.37217117560738,0,0,0.215915916102139,0,4.87703587578935,3.51182841698397,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,2.0911118104818,3.38836938193698,3.19383618190213,0,2.40921484835096,1.43124886741991,0,0,0,0,0,0,0,0,0,0,6.67202189191943,1.58510321173008,0.421258456238981,0,7.7988316682011,3.16950440270266,0.136499911407986,0,1.13008116620243,2.2054613741845,4.64407282668854,1.31535265576129,0,0,3.44947640836597,3.40805847909725,2.25356482025793,0.286822704408103,0,5.35006577221875,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568272293612826,0,0,0,0,0.140669416410513,0.111308705022906,0,0,0,0,0,2.45444838005172,0,0,0,0.537063524026827,0,0,0,0,0,0,0,0.260427761085233,0,0,0,0,0.236387681767936,0,0,0,0,0.361789315876224,0,0,0.295547618953547,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0,0.207376382794494,0,0.330991955875499,0,0,0,0,0,0,0.261177619741208,0,0,0.0967563312890851,0,0,0,0,0,1.09633539717401,0,0.0633107959558787,0,0.160317640503067,0,0.19980960958213,0,0,0,0,0.124252535565433,0,0.135904206073614,0.627617077873999,0.305994652908965,0,0,0.136905378891993,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0.236417121897595,0.104909176269996,0.105600336519406,0.537862017998534,0,0,0,0,0,0,0,1.19730191562487,0,0.681552087141687,0,0,0,0.129282956361551,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.110929051536852,0.124192805882767,0,0.874862855734746,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0.466311601748341,0.147855149989634,0.477890301491107,0,0.310525913752519,0,0,0,0,0,0.813741466409323,0,0.751873899297419,0,0,0,0.343395705182793,0,0,0,0.214441591374926,0,0.226705925512272,0.463044948647668,0.489473409012935,1.07453304648892,0,0.657852148736121,0,0,0,0.256241518587947,0,0.607719912354764,0.138258436151731,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0.636008701306837,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0.490738592505128,0,0,0.231051332300676,0,0,0,0.150420656698515,0,0,0,0.49131575253029,1.6264169483875,0.0675375846183947,0,0,0,0.546974809018219,0,0,0,1.14986184875636,0,0,0,0,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255640214277473,0,2.2910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0.437119121007915,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0.0679914901909147,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0.33639558774184,0,0,0,0,0,0,0,1.54666210360852,0,0,0.0898252021065869,0,0,0,0,0,0 | |||
|short_description=p2@LYPD1 | |||
}} |
Latest revision as of 00:37, 17 September 2015
Short description: | p2@LYPD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LYPD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_001077427, uc002tto.2_5end |
EntrezGene: | LYPD1 |
HGNC: | 28431 |
UniProt: | Q8N2G4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 4.23e-46 | 32 |
smooth muscle cell | 4.00e-33 | 43 |
smooth muscle myoblast | 4.00e-33 | 43 |
muscle cell | 6.78e-25 | 55 |
electrically responsive cell | 1.29e-24 | 61 |
electrically active cell | 1.29e-24 | 61 |
muscle precursor cell | 2.27e-23 | 58 |
myoblast | 2.27e-23 | 58 |
multi-potent skeletal muscle stem cell | 2.27e-23 | 58 |
smooth muscle cell of the subclavian artery | 9.34e-23 | 5 |
smooth muscle cell of the umbilical artery | 6.33e-19 | 4 |
mesodermal cell | 1.22e-12 | 121 |
aortic smooth muscle cell | 6.84e-11 | 10 |
mesangial cell | 1.68e-10 | 2 |
kidney interstitial cell | 1.68e-10 | 2 |
juxtaglomerular complex cell | 1.68e-10 | 2 |
renal interstitial pericyte | 1.68e-10 | 2 |
extraglomerular mesangial cell | 1.68e-10 | 2 |
smooth muscle cell of the internal thoracic artery | 1.68e-10 | 2 |
smooth muscle cell of the brachiocephalic vasculature | 9.39e-10 | 2 |
embryonic cell | 3.63e-08 | 250 |
kidney tubule cell | 1.85e-07 | 10 |
nephron tubule epithelial cell | 1.85e-07 | 10 |
smooth muscle cell of the coronary artery | 5.18e-07 | 3 |
astrocyte of the cerebral cortex | 9.60e-07 | 3 |