FFCP PHASE1:Hg19::chr1:2489069..2489079,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8764 | |EntrezGene=8764 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11912 | |HGNC=11912 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-172bp_to_ENST00000466750_5end | |association_with_transcript=-172bp_to_ENST00000466750_5end | ||
|cluster_id=chr1:2489069..2489079,+ | |||
|coexpression_cluster_id=C88 | |coexpression_cluster_id=C88 | ||
|description=CAGE_peak_20_at_TNFRSF14_5end | |description=CAGE_peak_20_at_TNFRSF14_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000148!6.68e-37!10;CL:0000541!6.68e-37!10;CL:0000147!7.82e-34!14;CL:0002567!5.79e-24!3;CL:0000710!4.49e-18!20;CL:0000325!1.93e-14!39;CL:0000075!3.54e-13!27;CL:0002077!1.25e-10!33;CL:0002566!7.18e-09!1;CL:0000149!2.15e-08!4;CL:0000333!5.82e-08!41 | |ontology_enrichment_celltype=CL:0000148!6.68e-37!10;CL:0000541!6.68e-37!10;CL:0000147!7.82e-34!14;CL:0002567!5.79e-24!3;CL:0000710!4.49e-18!20;CL:0000325!1.93e-14!39;CL:0000075!3.54e-13!27;CL:0002077!1.25e-10!33;CL:0002566!7.18e-09!1;CL:0000149!2.15e-08!4;CL:0000333!5.82e-08!41 | ||
|ontology_enrichment_celltype_v019=CL:0002567;1.54e-66;3!CL:0000148;4.07e-55;10!CL:0000147;1.66e-39;14!CL:0000710;8.89e-28;20!CL:0000075;1.16e-20;27!CL:0002077;6.09e-14;34 | |ontology_enrichment_celltype_v019=CL:0002567;1.54e-66;3!CL:0000148;4.07e-55;10!CL:0000147;1.66e-39;14!CL:0000710;8.89e-28;20!CL:0000075;1.16e-20;27!CL:0002077;6.09e-14;34 | ||
|ontology_enrichment_celltype_v019_2=CL:0002567,1.54e-66,3;CL:0000148,4.07e-55,10;CL:0000541,4.07e-55,10;CL:0000147,1.66e-39,14;CL:0000710,8.89e-28,20;CL:0000075,1.16e-20,27;CL:0002077,1.82e-16,34;CL:0000333,4.55e-13,41;CL:0000133,2.92e-09,59;CL:0000221,1.19e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0006242;5.13e-23;1 | |ontology_enrichment_development_v019=UBERON:0006242;5.13e-23;1 | ||
|ontology_enrichment_disease=DOID:1909!1.87e-16!2 | |ontology_enrichment_disease=DOID:1909!1.87e-16!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;9.78e-45;2 | |ontology_enrichment_disease_v019=DOID:1909;9.78e-45;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,1.22e-44,2 | |||
|ontology_enrichment_uberon=UBERON:0000966!7.26e-07!5;UBERON:0005388!7.26e-07!5;UBERON:0001802!7.26e-07!5 | |ontology_enrichment_uberon=UBERON:0000966!7.26e-07!5;UBERON:0005388!7.26e-07!5;UBERON:0001802!7.26e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0002110;1.40e-08;3!UBERON:0001003;7.86e-07;15!UBERON:0007376;7.86e-07;15 | |ontology_enrichment_uberon_v019=UBERON:0002110;1.40e-08;3!UBERON:0001003;7.86e-07;15!UBERON:0007376;7.86e-07;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002110,1.40e-08,3;UBERON:0006242,1.40e-08,3;UBERON:0001003,8.09e-07,15;UBERON:0007376,8.09e-07,15;UBERON:0007383,8.09e-07,15 | |||
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|short_description=p20@TNFRSF14 | |short_description=p20@TNFRSF14 | ||
}} | }} |
Latest revision as of 01:12, 17 September 2015
Short description: | p20@TNFRSF14 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_TNFRSF14_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | -172bp_to_ENST00000466750_5end |
EntrezGene: | TNFRSF14 |
HGNC: | 11912 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
light melanocyte | 1.54e-66 | 3 |
melanocyte | 4.07e-55 | 10 |
melanoblast | 4.07e-55 | 10 |
pigment cell | 1.66e-39 | 14 |
neurecto-epithelial cell | 8.89e-28 | 20 |
columnar/cuboidal epithelial cell | 1.16e-20 | 27 |
ecto-epithelial cell | 1.82e-16 | 34 |
migratory neural crest cell | 4.55e-13 | 41 |
neurectodermal cell | 2.92e-09 | 59 |
ectodermal cell | 1.19e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
gallbladder | 1.40e-08 | 3 |
gall bladder primordium | 1.40e-08 | 3 |
skin epidermis | 8.09e-07 | 15 |
outer epithelium | 8.09e-07 | 15 |
enveloping layer of ectoderm | 8.09e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.22e-44 | 2 |