FFCP PHASE1:Hg19::chr13:30951074..30951122,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:30951074..30951122,-
|short_description=p1@LINC00426
|description=CAGE_peak_1_at_LINC00426_5end
|association_with_transcript=0bp_to_ENST00000416261_5end
...") |
No edit summary |
||
(13 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=42761 | |HGNC=42761 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000416261_5end | |||
|cluster_id=chr13:30951074..30951122,- | |||
|coexpression_cluster_id=C900 | |||
|description=CAGE_peak_1_at_LINC00426_5end | |||
|id=chr13:30951074..30951122,- | |||
|ontology_enrichment_celltype=CL:0000542!1.80e-46!53;CL:0000051!1.80e-46!53;CL:0000838!1.38e-45!52;CL:0000037!4.39e-40!172;CL:0000566!4.39e-40!172;CL:0000988!6.62e-36!182;CL:0002032!8.77e-35!165;CL:0000837!8.77e-35!165;CL:0000738!3.68e-34!140;CL:0002087!2.37e-29!119;CL:0002031!6.30e-28!124;CL:0000084!5.98e-23!25;CL:0000827!5.98e-23!25;CL:0000945!2.33e-20!24;CL:0000826!2.33e-20!24;CL:0000791!1.10e-19!18;CL:0000789!1.10e-19!18;CL:0002420!1.10e-19!18;CL:0002419!1.10e-19!18;CL:0000790!1.10e-19!18;CL:0000236!3.57e-13!14;CL:0000625!9.67e-13!11;CL:0000624!6.68e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.49e-37;53!CL:0000084;1.57e-31;25!CL:0000945;9.99e-30;24!CL:0000791;1.26e-28;18!CL:0000789;1.26e-28;18!CL:0002419;1.26e-28;18!CL:0000625;2.55e-18;11!CL:0000236;9.28e-18;13!CL:0002087;2.70e-11;104!CL:0000624;5.02e-11;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,8.25e-67,53;CL:0000051,8.25e-67,53;CL:0000838,1.75e-65,52;CL:0000037,4.70e-36,168;CL:0000738,2.40e-33,136;CL:0000988,4.37e-33,177;CL:0002087,7.41e-33,115;CL:0000084,1.55e-31,25;CL:0000827,1.55e-31,25;CL:0000945,1.14e-29,24;CL:0000826,1.14e-29,24;CL:0002032,1.21e-29,161;CL:0000837,1.21e-29,161;CL:0000791,1.16e-28,18;CL:0000789,1.16e-28,18;CL:0002420,1.16e-28,18;CL:0002419,1.16e-28,18;CL:0000790,1.16e-28,18;CL:0002031,1.69e-25,120;CL:0000236,6.61e-19,14;CL:0000625,2.93e-18,11;CL:0000624,4.91e-11,6;CL:0000134,5.51e-07,354 | |||
|ontology_enrichment_development_v019=CL:0000051;1.49e-37;53!CL:0000790;1.26e-28;18 | |||
|ontology_enrichment_disease=DOID:2531!6.61e-10!51;DOID:0060083!6.61e-10!51;DOID:1240!5.56e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:0060058;1.47e-08;10!DOID:2531;6.71e-07;51!DOID:0060083;6.71e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.20e-10,51;DOID:0060083,1.20e-10,51;DOID:0060058,1.53e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0007023!7.29e-15!115;UBERON:0000178!1.60e-09!15;UBERON:0000179!1.60e-09!15;UBERON:0000463!1.60e-09!15;UBERON:0002390!4.00e-07!102;UBERON:0003061!4.00e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.49e-14;15!UBERON:0000179;3.49e-14;15!UBERON:0000463;3.49e-14;15!UBERON:0002390;4.96e-13;32!UBERON:0002193;1.34e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.65e-14,15;UBERON:0000179,3.65e-14,15;UBERON:0000463,3.65e-14,15;UBERON:0004177,1.94e-08,7;UBERON:0005057,1.94e-08,7;UBERON:0002370,1.13e-07,4;UBERON:0005058,1.13e-07,4;UBERON:0009113,1.13e-07,4;UBERON:0003295,1.13e-07,4;UBERON:0005562,1.13e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2857764471619,1.72411237844886,3.22714203386085,4.72037132218685,4.22212337906934,1.08371286321253,0,0,0,5.73257284294232,5.11809236954717,11.450417134059,3.32397245119126,1.60435557976113,2.38711957787437,0.895661896959697,4.21061765824673,2.31818010870768,0,0.755751887377619,0,0,0.822335776043652,0.929119112685311,0,0.512321413058201,0,0,0,0,0,0.272906150057846,0,0,0.320929027076094,0,0,0,0,0.290209238628584,0.56738522469114,0,0,0,0.217188844705117,1.21079900526674,0.368277635987565,0,0,0,0,0.112328631146495,0,0,0,0,0,7.03984977845291,7.09980194640771,5.33705552318133,8.10787422876364,5.20514783146816,4.02326707968138,7.93253847341835,6.67837628174755,4.55370375287559,8.80855784056408,3.44045905312706,6.60856642895129,3.92355994087075,4.74091352595139,10.8190373562608,16.1134412727158,19.7377439039529,40.7935048753255,10.4295125322749,22.2520468695325,17.534405556712,39.773533108007,78.6597772957815,76.8722614205165,96.1353716365805,34.9689302851093,36.0264392740863,21.0480517892705,18.5154511916518,25.2128684589496,5.78317596332036,6.42097987415311,12.5442628565972,30.9334505564356,29.5079780073479,36.7681366666414,35.4227568827304,21.6624481740386,24.7411712465439,18.0585888445191,15.0575119077773,19.4539648954716,26.2354525759926,21.3099526839615,18.8859439291841,11.4915843638097,6.41856469880418,5.06885413589796,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.785874452986276,0,0,0.324547393654683,0.174129737299267,0,0.953962497221368,1.14398982156026,1.48583000531826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,1.18157981336281,37.96582654966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.44024217006613,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90544744788996,15.7624608161542,10.5657511681163,10.6524720112191,0,0,0,0,0,0,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.2707210449155,6.25571182373989,7.15074637283077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.877039506583738,0.522870902049801,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,11.6712950123399,9.94028369285088,11.9625909306574,12.1498205483472,12.3408681925858,10.3755729790835,11.8806916192385,8.72437693923697,0,0,0,5.38829207864584,3.02965347250534,8.75044673185494,4.62336190913585,0.997896857164083,2.68107518185313,2.11673582723883,0.649243880549111,21.3405855366229,18.4870090016886,3.60363760277953,0,0.677167111206413,0.481764225311099,1.61439765752838,5.96184732766457,2.06103206853459,0,0,0,7.81552381608161,0,0,0,0.66614393599564,0,0,0.293016358543788,0,6.46371628809375,0,0,0,0,0,0,0,0,0,0.597743964753209,9.39365312805902,0,0,1.23084805461069,0,0,0,0,0.789147245095469,9.57932369387759,0,0,0.0927680981618513,0,0,0,0,0,1.27126825146383,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.615602068030377,0,0,0,0,0,0,0,16.3509277113178,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,1.68069372556344,2.4441205797345,0,0,0,0.269604531922708,0,0,3.10173141666632,0,0,0,0,0.30607276163049,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0,1.16386819786103,0,0,0,0,0.0633107959558787,0,0,1.92107695265417,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,7.66479528401834,0,0.525774708558629,0,0.229160424011684,0,0.199679000498991,0.429226048136571,0,0.201550417460179,0,0,0,0,0,0,1.77813997338147,0,0,0,0,0,0.2249738915515,0,0,0,0.394028536495991,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0.26446520348538,0,0.704815022316672,0.747511887973863,0.314408610199332,0.414239055347196,6.94632430536731,0.395223263795889,2.19226677085613,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0.327130788511688,0,0,0,1.19992437512958,1.06691729694141,1.20550485762571,0,0,0,0,0,0,0,0,0,0,0,0,0,7.41300403011781,0,0,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0,0,0.0981477185010256,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0.548257766857182,0.992422356778588,0,0,0,0,0,0,0.266107110487916,5.76169937778896,0,0.0679697329768317,0,0,0,0.627944742804112,0,0,0,0.431855182437243,0,0.78624198594322,0,0,0,0,0,0,0,2.15113679410139,0,0,0,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,1.54348316215889,0.655678681511872,0,0,0,0.196308467114945,0.297046400327086,0,0,3.66537280121429,5.54337836572764,0,0,0,0,0,1.37618785021362,0.143339583151451,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0.20686599172379,1.27940389140589,0.952257725854961,30.8734989016109,48.5424265793609,0,0.12729431655633,0,1.30630048738177,0.342233301085281,16.0971406704864,1.79305513481691,0,0,0,0,0,0,0.611207220914332,0.406896178315738,0,11.6738800282795,3.52625341533556 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2857764471619,1.72411237844886,3.22714203386085,4.72037132218685,4.22212337906934,1.08371286321253,0,0,0,5.73257284294232,5.11809236954717,11.450417134059,3.32397245119126,1.60435557976113,2.38711957787437,0.895661896959697,4.21061765824673,2.31818010870768,0,0.755751887377619,0,0,0.822335776043652,0.929119112685311,0,0.512321413058201,0,0,0,0,0,0.272906150057846,0,0,0.320929027076094,0,0,0,0,0.290209238628584,0.56738522469114,0,0,0,0.217188844705117,1.21079900526674,0.368277635987565,0,0,0,0,0.112328631146495,0,0,0,0,0,7.03984977845291,7.09980194640771,5.33705552318133,8.10787422876364,5.20514783146816,4.02326707968138,7.93253847341835,6.67837628174755,4.55370375287559,8.80855784056408,3.44045905312706,6.60856642895129,3.92355994087075,4.74091352595139,10.8190373562608,16.1134412727158,19.7377439039529,40.7935048753255,10.4295125322749,22.2520468695325,17.534405556712,39.773533108007,78.6597772957815,76.8722614205165,96.1353716365805,34.9689302851093,36.0264392740863,21.0480517892705,18.5154511916518,25.2128684589496,5.78317596332036,6.42097987415311,12.5442628565972,30.9334505564356,29.5079780073479,36.7681366666414,35.4227568827304,21.6624481740386,24.7411712465439,18.0585888445191,15.0575119077773,19.4539648954716,26.2354525759926,21.3099526839615,18.8859439291841,11.4915843638097,6.41856469880418,5.06885413589796,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.785874452986276,0,0,0.324547393654683,0.174129737299267,0,0.953962497221368,1.14398982156026,1.48583000531826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,1.18157981336281,37.96582654966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.44024217006613,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90544744788996,15.7624608161542,10.5657511681163,10.6524720112191,0,0,0,0,0,0,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.2707210449155,6.25571182373989,7.15074637283077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.877039506583738,0.522870902049801,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,11.6712950123399,9.94028369285088,11.9625909306574,12.1498205483472,12.3408681925858,10.3755729790835,11.8806916192385,8.72437693923697,0,0,0,5.38829207864584,3.02965347250534,8.75044673185494,4.62336190913585,0.997896857164083,2.68107518185313,2.11673582723883,0.649243880549111,21.3405855366229,18.4870090016886,3.60363760277953,0,0.677167111206413,0.481764225311099,1.61439765752838,5.96184732766457,2.06103206853459,0,0,0,7.81552381608161,0,0,0,0.66614393599564,0,0,0.293016358543788,0,6.46371628809375,0,0,0,0,0,0,0,0,0,0.597743964753209,9.39365312805902,0,0,1.23084805461069,0,0,0,0,0.789147245095469,9.57932369387759,0,0,0.0927680981618513,0,0,0,0,0,1.27126825146383,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.615602068030377,0,0,0,0,0,0,0,16.3509277113178,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,1.68069372556344,2.4441205797345,0,0,0,0.269604531922708,0,0,3.10173141666632,0,0,0,0,0.30607276163049,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0,1.16386819786103,0,0,0,0,0.0633107959558787,0,0,1.92107695265417,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,7.66479528401834,0,0.525774708558629,0,0.229160424011684,0,0.199679000498991,0.429226048136571,0,0.201550417460179,0,0,0,0,0,0,1.77813997338147,0,0,0,0,0,0.2249738915515,0,0,0,0.394028536495991,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0.26446520348538,0,0.704815022316672,0.747511887973863,0.314408610199332,0.414239055347196,6.94632430536731,0.395223263795889,2.19226677085613,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0.327130788511688,0,0,0,1.19992437512958,1.06691729694141,1.20550485762571,0,0,0,0,0,0,0,0,0,0,0,0,0,7.41300403011781,0,0,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0,0,0.0981477185010256,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0.548257766857182,0.992422356778588,0,0,0,0,0,0,0.266107110487916,5.76169937778896,0,0.0679697329768317,0,0,0,0.627944742804112,0,0,0,0.431855182437243,0,0.78624198594322,0,0,0,0,0,0,0,2.15113679410139,0,0,0,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,1.54348316215889,0.655678681511872,0,0,0,0.196308467114945,0.297046400327086,0,0,3.66537280121429,5.54337836572764,0,0,0,0,0,1.37618785021362,0.143339583151451,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0.20686599172379,1.27940389140589,0.952257725854961,30.8734989016109,48.5424265793609,0,0.12729431655633,0,1.30630048738177,0.342233301085281,16.0971406704864,1.79305513481691,0,0,0,0,0,0,0.611207220914332,0.406896178315738,0,11.6738800282795,3.52625341533556 | ||
|short_description=p1@LINC00426 | |||
}} | }} |
Latest revision as of 01:56, 17 September 2015
Short description: | p1@LINC00426 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LINC00426_5end |
Coexpression cluster: | C900_CD4_thymus_Hodgkin_CD8_CD34_chronic_CD133 |
Association with transcript: | 0bp_to_ENST00000416261_5end |
EntrezGene: | NA |
HGNC: | 42761 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 8.25e-67 | 53 |
common lymphoid progenitor | 8.25e-67 | 53 |
lymphoid lineage restricted progenitor cell | 1.75e-65 | 52 |
hematopoietic stem cell | 4.70e-36 | 168 |
leukocyte | 2.40e-33 | 136 |
hematopoietic cell | 4.37e-33 | 177 |
nongranular leukocyte | 7.41e-33 | 115 |
T cell | 1.55e-31 | 25 |
pro-T cell | 1.55e-31 | 25 |
lymphocyte of B lineage | 1.14e-29 | 24 |
pro-B cell | 1.14e-29 | 24 |
hematopoietic oligopotent progenitor cell | 1.21e-29 | 161 |
hematopoietic multipotent progenitor cell | 1.21e-29 | 161 |
mature alpha-beta T cell | 1.16e-28 | 18 |
alpha-beta T cell | 1.16e-28 | 18 |
immature T cell | 1.16e-28 | 18 |
mature T cell | 1.16e-28 | 18 |
immature alpha-beta T cell | 1.16e-28 | 18 |
hematopoietic lineage restricted progenitor cell | 1.69e-25 | 120 |
B cell | 6.61e-19 | 14 |
CD8-positive, alpha-beta T cell | 2.93e-18 | 11 |
CD4-positive, alpha-beta T cell | 4.91e-11 | 6 |
mesenchymal cell | 5.51e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
blood | 3.65e-14 | 15 |
haemolymphatic fluid | 3.65e-14 | 15 |
organism substance | 3.65e-14 | 15 |
hemopoietic organ | 1.94e-08 | 7 |
immune organ | 1.94e-08 | 7 |
thymus | 1.13e-07 | 4 |
hemolymphoid system gland | 1.13e-07 | 4 |
thymic region | 1.13e-07 | 4 |
pharyngeal gland | 1.13e-07 | 4 |
thymus primordium | 1.13e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.20e-10 | 51 |
immune system cancer | 1.20e-10 | 51 |
lymphoma | 1.53e-08 | 10 |