FFCP PHASE1:Hg19::chr5:178422337..178422351,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2916 | |EntrezGene=2916 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4598 | |HGNC=4598 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-38bp_to_ENST00000517717_5end | |||
|cluster_id=chr5:178422337..178422351,- | |||
|coexpression_cluster_id=C87 | |||
|description=CAGE_peak_2_at_GRM6_5end | |||
|id=chr5:178422337..178422351,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.51e-53;3 | |||
|ontology_enrichment_disease=DOID:169!3.13e-08!6 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!8.02e-24!2;UBERON:0002757!8.02e-24!2;UBERON:0010134!8.02e-24!2;UBERON:0002784!8.02e-24!2;UBERON:0005408!8.02e-24!2;UBERON:0001899!8.02e-24!2;UBERON:0003296!2.08e-12!4;UBERON:0010133!2.08e-12!4;UBERON:0002022!4.31e-12!1;UBERON:0000073!3.79e-10!94;UBERON:0001016!3.79e-10!94;UBERON:0000966!4.16e-10!5;UBERON:0005388!4.16e-10!5;UBERON:0001802!4.16e-10!5;UBERON:0000013!1.06e-09!5;UBERON:0002410!1.06e-09!5;UBERON:0000970!2.79e-09!20;UBERON:0002104!7.58e-09!21;UBERON:0003056!3.09e-08!61;UBERON:0000020!4.31e-08!23;UBERON:0001032!9.23e-08!24;UBERON:0004456!9.23e-08!24;UBERON:0001894!1.84e-07!7;UBERON:0006222!1.84e-07!7;UBERON:0003075!2.43e-07!86;UBERON:0007284!2.43e-07!86;UBERON:0005743!3.05e-07!86;UBERON:0002346!5.62e-07!90;UBERON:0002360!8.52e-07!2;UBERON:0000094!8.52e-07!2;UBERON:0007645!8.52e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;2.34e-79;2!UBERON:0002757;2.34e-79;2!UBERON:0010134;2.34e-79;2!UBERON:0005408;2.34e-79;2!UBERON:0001899;2.34e-79;2!UBERON:0003296;2.22e-40;4!UBERON:0010133;2.22e-40;4!UBERON:0002784;2.22e-40;4!UBERON:0000966;1.57e-32;5!UBERON:0005388;1.57e-32;5!UBERON:0001802;1.57e-32;5!UBERON:0001894;1.28e-23;7!UBERON:0002368;4.01e-10;33!UBERON:0000949;1.74e-09;43!UBERON:0000019;2.21e-09;19!UBERON:0000047;2.21e-09;19!UBERON:0004088;2.21e-09;19!UBERON:0010230;2.21e-09;19!UBERON:0000970;5.82e-09;20!UBERON:0002104;1.39e-08;21!UBERON:0001456;1.39e-08;21!UBERON:0000020;6.40e-08;23!UBERON:0001032;1.25e-07;24!UBERON:0004456;1.25e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,2.34e-79,2;UBERON:0002757,2.34e-79,2;UBERON:0010134,2.34e-79,2;UBERON:0005408,2.34e-79,2;UBERON:0001899,2.34e-79,2;UBERON:0003296,2.22e-40,4;UBERON:0010133,2.22e-40,4;UBERON:0002784,2.22e-40,4;UBERON:0000966,2.38e-27,6;UBERON:0005388,2.38e-27,6;UBERON:0001802,2.38e-27,6;UBERON:0001894,1.28e-23,7;UBERON:0006222,1.28e-23,7;UBERON:0002368,5.49e-11,35;UBERON:0003056,6.33e-11,61;UBERON:0000019,5.70e-09,20;UBERON:0000047,5.70e-09,20;UBERON:0010312,5.70e-09,20;UBERON:0004088,5.70e-09,20;UBERON:0010230,5.70e-09,20;UBERON:0003072,5.70e-09,20;UBERON:0004128,5.70e-09,20;UBERON:0003071,5.70e-09,20;UBERON:0000949,1.01e-08,45;UBERON:0000970,1.37e-08,21;UBERON:0002104,1.37e-08,21;UBERON:0003075,2.54e-08,82;UBERON:0007284,2.54e-08,82;UBERON:0001456,3.04e-08,22;UBERON:0002346,5.76e-08,86;UBERON:0000020,1.23e-07,24;UBERON:0001032,1.23e-07,24;UBERON:0004456,1.23e-07,24;UBERON:0002530,8.00e-07,59 | |||
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|short_description=p2@GRM6 | |||
}} | }} |
Latest revision as of 08:10, 17 September 2015
Short description: | p2@GRM6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GRM6_5end |
Coexpression cluster: | C87_retinoblastoma_left_nonsmall_heart_small_diaphragm_bronchogenic |
Association with transcript: | -38bp_to_ENST00000517717_5end |
EntrezGene: | GRM6 |
HGNC: | 4598 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 2.34e-79 | 2 |
regional part of epithalamus | 2.34e-79 | 2 |
secretory circumventricular organ | 2.34e-79 | 2 |
circumventricular organ | 2.34e-79 | 2 |
epithalamus | 2.34e-79 | 2 |
gland of diencephalon | 2.22e-40 | 4 |
neuroendocrine gland | 2.22e-40 | 4 |
regional part of diencephalon | 2.22e-40 | 4 |
retina | 2.38e-27 | 6 |
photoreceptor array | 2.38e-27 | 6 |
posterior segment of eyeball | 2.38e-27 | 6 |
diencephalon | 1.28e-23 | 7 |
future diencephalon | 1.28e-23 | 7 |
endocrine gland | 5.49e-11 | 35 |
pre-chordal neural plate | 6.33e-11 | 61 |
camera-type eye | 5.70e-09 | 20 |
simple eye | 5.70e-09 | 20 |
immature eye | 5.70e-09 | 20 |
ocular region | 5.70e-09 | 20 |
eyeball of camera-type eye | 5.70e-09 | 20 |
optic cup | 5.70e-09 | 20 |
optic vesicle | 5.70e-09 | 20 |
eye primordium | 5.70e-09 | 20 |
endocrine system | 1.01e-08 | 45 |
eye | 1.37e-08 | 21 |
visual system | 1.37e-08 | 21 |
neural plate | 2.54e-08 | 82 |
presumptive neural plate | 2.54e-08 | 82 |
face | 3.04e-08 | 22 |
neurectoderm | 5.76e-08 | 86 |
sense organ | 1.23e-07 | 24 |
sensory system | 1.23e-07 | 24 |
entire sense organ system | 1.23e-07 | 24 |
gland | 8.00e-07 | 59 |