FFCP PHASE1:Hg19::chr5:179250894..179250918,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8878 | |EntrezGene=8878 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11280 | |HGNC=11280 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=36bp_to_ENST00000466342_5end | |association_with_transcript=36bp_to_ENST00000466342_5end | ||
|cluster_id=chr5:179250894..179250918,+ | |||
|coexpression_cluster_id=C4489 | |||
|description=CAGE_peak_10_at_SQSTM1_5end | |description=CAGE_peak_10_at_SQSTM1_5end | ||
|id=chr5:179250894..179250918,+ | |id=chr5:179250894..179250918,+ | ||
|ontology_enrichment_celltype=CL:0000839!1.31e-14!70;CL:0000557!2.19e-14!71;CL:0002057!3.95e-13!42;CL:0002194!7.84e-13!63;CL:0000576!7.84e-13!63;CL:0000040!7.84e-13!63;CL:0000559!7.84e-13!63;CL:0000860!1.07e-12!45;CL:0002009!1.23e-12!65;CL:0000766!1.28e-12!76 | |ontology_enrichment_celltype=CL:0000839!1.31e-14!70;CL:0000557!2.19e-14!71;CL:0002057!3.95e-13!42;CL:0002194!7.84e-13!63;CL:0000576!7.84e-13!63;CL:0000040!7.84e-13!63;CL:0000559!7.84e-13!63;CL:0000860!1.07e-12!45;CL:0002009!1.23e-12!65;CL:0000766!1.28e-12!76 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.15e-30;33!CL:0002057;2.15e-30;33!CL:0000473;4.90e-26;39!CL:0000234;4.90e-26;39!CL:0000576;2.49e-16;48!CL:0000766;5.81e-13;69!CL:0000097;2.73e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000839,9.29e-27,66;CL:0000473,1.56e-26,48;CL:0000234,1.56e-26,48;CL:0000557,3.27e-26,67;CL:0000766,1.59e-25,72;CL:0000860,3.37e-24,42;CL:0002057,3.37e-24,42;CL:0002194,5.08e-23,59;CL:0000576,5.08e-23,59;CL:0000040,5.08e-23,59;CL:0000559,5.08e-23,59;CL:0002009,5.51e-22,61;CL:0000763,9.94e-14,108;CL:0000049,9.94e-14,108;CL:0002031,1.72e-10,120;CL:0000738,4.94e-09,136;CL:0002087,6.34e-08,115;CL:0000134,1.25e-07,354;CL:0002320,1.27e-07,361;CL:0000723,1.84e-07,433;CL:0000048,2.28e-07,427;CL:0000097,3.07e-07,5;CL:0002028,3.07e-07,5;CL:0000034,5.06e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.58e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;2.33e-07;3!DOID:127;2.33e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.64e-07,3;DOID:127,1.64e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0002371!1.49e-11!80;UBERON:0001474!3.97e-09!86;UBERON:0002405!8.14e-09!115;UBERON:0004765!2.02e-08!101;UBERON:0001434!2.02e-08!101;UBERON:0000926!3.32e-07!448;UBERON:0004120!3.32e-07!448;UBERON:0006603!3.32e-07!448;UBERON:0002193!9.19e-07!112 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.05e-22,76;UBERON:0001474,1.25e-19,82;UBERON:0004765,3.67e-18,90;UBERON:0001434,1.41e-17,100;UBERON:0002405,2.29e-17,93;UBERON:0002390,7.12e-15,98;UBERON:0003061,7.12e-15,98;UBERON:0002193,1.28e-13,108;UBERON:0002204,1.07e-12,167;UBERON:0000926,1.18e-12,315;UBERON:0004120,1.18e-12,315;UBERON:0006603,1.18e-12,315;UBERON:0003081,1.46e-10,203;UBERON:0002384,5.12e-07,371 | |||
|phase1_expression=1.2717486548939,1.92690471501885,0.704772020479856,1.0007329835313,1.34088328328186,0,5.06599756336621,0.631719873426831,0.783556884599516,0,0.697801167972428,0,0,0,0.331397375727916,0,0.602694528023977,0,0,0,0,0.626909442956176,0.286235987131057,0,0.125542639594803,0,0.0821005894499457,0,0,0,0,1.83884244895785,0.30120591877825,0.739508020333575,0,0,0,0,0.200544447470142,0.217010870715852,1.56740831967947,0.647787332037959,2.31818010870768,2.90796477559129,5.29026321164333,1.94067248950253,3.0215774797739,5.75635043230556,3.09706370895104,1.1507695692886,1.2808035326455,0.47296445977717,1.03423704220986,1.93645405075148,1.35426486594342,3.38836211176688,6.00393530127261,1.79778787556068,1.22433556948361,1.92557416245656,1.91801137739712,0.659702600373432,1.79517291859469,1.27867425159808,1.7412554317715,2.26954089876456,1.86846674698672,0.502497330513487,2.60741459210101,0.434377689410233,1.21079900526674,1.84138817993782,0.316462387440884,0.633765858935825,0,0.419317291016752,0.22465726229299,0.300353785683013,0,0.285012743741249,0,0.182664153764634,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0.382273228125229,0,0,0,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0.25618263945135,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0.236777252044017,0,0,0.267440195783507,0,0,0,0,1.0843174571537,0.50133791063589,0.434539556882471,2.3858578411533,0.486634870302636,0.0945348171640679,0,0,0.0654895377488563,0.364295288292542,0.370784442784429,0.97364218096405,0.174129737299267,0.664789802594326,0,0,0,0,0,0,0,0,0.825354125820202,0.417989933073621,0.516833518338658,0.35576626268671,0.33472061276467,0.805658634218294,0,1.70843440283719,0,0,0.17859945656816,0,0.225222960966644,0,0,0.183201743930407,0,0,0,0,0.379891534993739,1.58891016975863,1.14734648299525,1.06400514659507,0,0,0.74000264525148,0.622422070799533,0.269421344139376,0.490385709340376,0.454072282934794,0,0,1.87296046098192,0,0.448346041655403,0.352303495931295,0,0,0.204154171254893,0.245668634623536,0.206651562351531,1.18800285728205,3.70900393917835,0,1.43723628363248,0,0.125118519871964,0.277064115484183,0,0.30648779579902,1.50238058906597,0.113432183160021,0,0.640672166455702,0.211931901159562,0,0.206105058476878,0,0,0,0.0974370051611986,0,0,0.323292113637624,0,0.10075209822764,0,0.57978255948989,0,0.573609190778008,0.487894824518382,0,0.232387885739037,0.10366105501537,0.504641701751257,0,0,0,2.76269842704961,0,0.721879481669586,0.354920400119532,0.168584690078102,0.241011029883482,0.772057809126758,0.217879444092406,0.237270619111097,0.404493924480493,0.196221465125346,0,0,1.40241773803446,0.4115740113314,0,0,0,0.590789906681404,0,0,0,0.109750285408626,1.1240175325762,0.100528972411631,0.0925884451585296,0.325808305310325,0,0,0.115930404975077,0.234817388471643,0.288732895522148,0,0.570762456703795,0,0,0,0.234004265139238,0.297262324577456,0,0.16798212819886,0.283550194484773,0,0,0.383382679165211,0.492663237895943,1.32072651019839,2.28060927094849,2.45003920808834,5.6809095041871,0.190493682876507,0.763976851116555,2.34434894420094,0,0.514137463516618,0.300343057843917,0.857479297891735,0,0,0.07333828582095,0.517086863031111,0,0,0.531876233169741,0,0,0,0.266422179016099,0,0,0,0.325736184293735,0.710783897485092,0,2.1100756394171,1.74306691720059,0.399891964728228,3.64871341923571,1.50677127429638,4.21667878966063,0.479249710983165,0,0,1.01346914667305,0.205476322550383,0.716243852959582,0,0.197030760201927,0,0,0,0,0.773288812777695,0,0,0,2.99161459204025,0.414415513436035,0.49076596687656,1.00034104211935,0.271265023699736,0.207970861530807,0.178428988797162,0,0.468565659970853,1.20378439891088,13.6444502433591,3.10419213877515,0.664225598535437,0.184369168541703,0.955719759148911,0.979005787313703,0.686286847621712,0,0.215714200818617,0.106727557803444,0.909382714338778,0,0.30239029332968,0.744323423456331,0,1.68396056659844,0.768834895534206,0,0.64341568457443,4.45254199334973,0.154209693802656,0.532685175939381,0.246381468041427,1.03850885836724,0.348631135379878,0.725156697549733,2.40607764363942,1.28913384510255,0.114814448164607,0.728364672026868,4.98272776845812,0,0.15403067420883,0,0,0.105551628892876,2.27466768141793,0.680374821106063,0,1.54227252690289,0.541892875087706,0.501689773854853,0.254876273045038,0,0.447749509444357,0,0.261435451024901,0,0.328014645699706,0,0.515205058238611,0,0,0.574265537996172,0,0,0.290012154876366,0.616194468458578,0.15350367472613,0.137836572484531,0.107420244868274,0,0.0852266274161009,0,0.661139661443912,0.576570202095319,0,1.51736671283325,0.464845549297286,0.62962469366128,0,0,0,0,0.18532421910392,0,0,0,0.571890581771475,0,0,0.95460974377781,0,0.359744915166629,0,0.117812402345686,1.01091240786658,3.17020642346017,0,0,0.487426979262569,1.05650146756755,0.272999822815972,1.97967604735198,1.13008116620243,1.10273068709225,0.66343897524122,0.438450885253763,1.15755106853338,1.31178950409327,0.202910376962704,0.30982349809975,0,0,0,0.35667105148125,0,1.0555381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| ||
|short_description=p10@SQSTM1 | |short_description=p10@SQSTM1 | ||
}} | }} |
Latest revision as of 09:50, 17 September 2015
Short description: | p10@SQSTM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_SQSTM1_5end |
Coexpression cluster: | C4489_Osteoblast_CD14_leiomyoma_Monocytederived_mesothelioma_Prostate_mesenchymal |
Association with transcript: | 36bp_to_ENST00000466342_5end |
EntrezGene: | SQSTM1 |
HGNC: | 11280 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid lineage restricted progenitor cell | 9.29e-27 | 66 |
defensive cell | 1.56e-26 | 48 |
phagocyte | 1.56e-26 | 48 |
granulocyte monocyte progenitor cell | 3.27e-26 | 67 |
myeloid leukocyte | 1.59e-25 | 72 |
classical monocyte | 3.37e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.37e-24 | 42 |
monopoietic cell | 5.08e-23 | 59 |
monocyte | 5.08e-23 | 59 |
monoblast | 5.08e-23 | 59 |
promonocyte | 5.08e-23 | 59 |
macrophage dendritic cell progenitor | 5.51e-22 | 61 |
myeloid cell | 9.94e-14 | 108 |
common myeloid progenitor | 9.94e-14 | 108 |
hematopoietic lineage restricted progenitor cell | 1.72e-10 | 120 |
leukocyte | 4.94e-09 | 136 |
nongranular leukocyte | 6.34e-08 | 115 |
mesenchymal cell | 1.25e-07 | 354 |
connective tissue cell | 1.27e-07 | 361 |
somatic stem cell | 1.84e-07 | 433 |
multi fate stem cell | 2.28e-07 | 427 |
mast cell | 3.07e-07 | 5 |
basophil mast progenitor cell | 3.07e-07 | 5 |
stem cell | 5.06e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.05e-22 | 76 |
bone element | 1.25e-19 | 82 |
skeletal element | 3.67e-18 | 90 |
skeletal system | 1.41e-17 | 100 |
immune system | 2.29e-17 | 93 |
hematopoietic system | 7.12e-15 | 98 |
blood island | 7.12e-15 | 98 |
hemolymphoid system | 1.28e-13 | 108 |
musculoskeletal system | 1.07e-12 | 167 |
mesoderm | 1.18e-12 | 315 |
mesoderm-derived structure | 1.18e-12 | 315 |
presumptive mesoderm | 1.18e-12 | 315 |
lateral plate mesoderm | 1.46e-10 | 203 |
connective tissue | 5.12e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.64e-07 | 3 |
leiomyoma | 1.64e-07 | 3 |