FFCP PHASE1:Hg19::chr9:36401155..36401219,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:36401155..36401219,- to FFCP PHASE1:Hg19::chr9:36401155..36401219,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=152006 | |EntrezGene=152006 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18052 | |HGNC=18052 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H0F5 | |UniProt=Q9H0F5 | ||
|association_with_transcript=0bp_to_ENST00000377885,ENST00000484621,ENST00000491349,NM_194330,uc003zzm.2_5end | |||
|cluster_id=chr9:36401155..36401219,- | |||
|description=CAGE_peak_4_at_RNF38_5end | |||
|id=chr9:36401155..36401219,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.68e-28!115;UBERON:0001017!1.55e-11!82;UBERON:0001049!2.91e-11!57;UBERON:0005068!2.91e-11!57;UBERON:0006241!2.91e-11!57;UBERON:0007135!2.91e-11!57;UBERON:0005743!3.18e-11!86;UBERON:0000073!2.85e-10!94;UBERON:0001016!2.85e-10!94;UBERON:0000955!1.51e-09!69;UBERON:0006238!1.51e-09!69;UBERON:0002616!1.67e-09!59;UBERON:0003080!8.06e-09!42;UBERON:0002780!1.98e-08!41;UBERON:0001890!1.98e-08!41;UBERON:0006240!1.98e-08!41;UBERON:0002346!2.93e-08!90;UBERON:0001893!4.90e-08!34;UBERON:0003075!4.97e-08!86;UBERON:0007284!4.97e-08!86;UBERON:0002020!8.39e-08!34;UBERON:0003528!8.39e-08!34;UBERON:0002791!1.38e-07!33;UBERON:0001869!2.48e-07!32;UBERON:0001950!8.37e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;4.42e-09;20!UBERON:0002619;7.83e-09;22!UBERON:0001893;1.69e-08;34!UBERON:0003528;2.84e-08;34!UBERON:0002020;2.84e-08;34!UBERON:0007023;3.59e-08;114!UBERON:0001869;3.92e-08;32!UBERON:0002791;4.23e-08;32!UBERON:0000956;9.14e-08;25!UBERON:0000203;9.14e-08;25!UBERON:0000073;3.43e-07;53!UBERON:0002616;3.43e-07;53!UBERON:0002780;4.05e-07;41!UBERON:0001890;4.05e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.11e-33,114;UBERON:0001049,4.75e-12,56;UBERON:0005068,4.75e-12,56;UBERON:0006241,4.75e-12,56;UBERON:0007135,4.75e-12,56;UBERON:0000073,2.73e-11,53;UBERON:0002616,2.73e-11,53;UBERON:0001017,6.97e-11,81;UBERON:0001893,1.78e-10,34;UBERON:0003528,3.67e-10,34;UBERON:0002020,3.67e-10,34;UBERON:0001016,8.53e-10,89;UBERON:0002780,1.19e-09,41;UBERON:0001890,1.19e-09,41;UBERON:0003080,1.19e-09,41;UBERON:0006240,1.19e-09,41;UBERON:0001869,1.55e-09,32;UBERON:0001950,1.58e-09,20;UBERON:0002791,1.98e-09,32;UBERON:0002619,3.26e-09,22;UBERON:0000955,6.11e-09,68;UBERON:0006238,6.11e-09,68;UBERON:0003075,8.09e-09,82;UBERON:0007284,8.09e-09,82;UBERON:0002346,1.12e-08,86;UBERON:0000956,4.78e-08,25;UBERON:0000203,4.78e-08,25;UBERON:0003056,7.56e-07,61 | |||
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| ||
|short_description=p4@RNF38 | |||
}} | }} |
Latest revision as of 09:51, 17 September 2015
Short description: | p4@RNF38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RNF38_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000377885, ENST00000484621, ENST00000491349, NM_194330, uc003zzm.2_5end |
EntrezGene: | RNF38 |
HGNC: | 18052 |
UniProt: | Q9H0F5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.11e-33 | 114 |
neural tube | 4.75e-12 | 56 |
neural rod | 4.75e-12 | 56 |
future spinal cord | 4.75e-12 | 56 |
neural keel | 4.75e-12 | 56 |
regional part of nervous system | 2.73e-11 | 53 |
regional part of brain | 2.73e-11 | 53 |
central nervous system | 6.97e-11 | 81 |
telencephalon | 1.78e-10 | 34 |
brain grey matter | 3.67e-10 | 34 |
gray matter | 3.67e-10 | 34 |
nervous system | 8.53e-10 | 89 |
regional part of forebrain | 1.19e-09 | 41 |
forebrain | 1.19e-09 | 41 |
anterior neural tube | 1.19e-09 | 41 |
future forebrain | 1.19e-09 | 41 |
cerebral hemisphere | 1.55e-09 | 32 |
neocortex | 1.58e-09 | 20 |
regional part of telencephalon | 1.98e-09 | 32 |
regional part of cerebral cortex | 3.26e-09 | 22 |
brain | 6.11e-09 | 68 |
future brain | 6.11e-09 | 68 |
neural plate | 8.09e-09 | 82 |
presumptive neural plate | 8.09e-09 | 82 |
neurectoderm | 1.12e-08 | 86 |
cerebral cortex | 4.78e-08 | 25 |
pallium | 4.78e-08 | 25 |
pre-chordal neural plate | 7.56e-07 | 61 |