FFCP PHASE1:Hg19::chr5:31193847..31193887,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:31193847..31193887,+
|short_description=p1@CDH6
|description=CAGE_peak_1_at_CDH6_5end
|association_with_transcript=0bp_to_ENST00000265071,ENST00000506396,E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1004 | |EntrezGene=1004 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1765 | |HGNC=1765 | ||
|TSSclassifier=strong | |||
|UniProt=P55285,D6RF86 | |UniProt=P55285,D6RF86 | ||
|association_with_transcript=0bp_to_ENST00000265071,ENST00000506396,ENST00000514738_5end | |||
|cluster_id=chr5:31193847..31193887,+ | |||
|coexpression_cluster_id=C1958 | |||
|description=CAGE_peak_1_at_CDH6_5end | |||
|id=chr5:31193847..31193887,+ | |||
|ontology_enrichment_celltype=CL:0000359!1.22e-16!32;CL:0000192!1.46e-12!42;CL:0000514!1.46e-12!42;CL:0000055!2.15e-12!180;CL:0000393!1.87e-11!60;CL:0000211!1.87e-11!60;CL:0000183!2.34e-11!59;CL:0000187!2.30e-10!54;CL:0000680!3.33e-10!57;CL:0000056!3.33e-10!57;CL:0000355!3.33e-10!57;CL:0002539!6.06e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.25e-16;32!CL:0000192;6.10e-09;43!CL:0002539;1.20e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,2.65e-17,32;CL:0000192,1.42e-11,43;CL:0000514,1.42e-11,43;CL:0000393,3.22e-09,61;CL:0000211,3.22e-09,61;CL:0000187,4.72e-08,55;CL:0002539,1.19e-07,10;CL:0000680,1.80e-07,58;CL:0000056,1.80e-07,58;CL:0000355,1.80e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000514;6.10e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0004573;4.65e-12;33!UBERON:0004571;4.65e-12;33!UBERON:0000073;1.71e-10;53!UBERON:0002616;1.71e-10;53!UBERON:0003528;2.14e-10;34!UBERON:0002020;2.14e-10;34!UBERON:0001869;2.17e-10;32!UBERON:0002780;2.39e-10;41!UBERON:0001890;2.39e-10;41!UBERON:0002791;2.97e-10;32!UBERON:0001893;3.67e-10;34!UBERON:0001017;8.68e-10;75!UBERON:0001637;9.43e-10;42!UBERON:0003509;9.43e-10;42!UBERON:0004572;9.43e-10;42!UBERON:0000955;4.75e-09;68!UBERON:0000956;1.16e-08;25!UBERON:0000203;1.16e-08;25!UBERON:0001016;5.65e-08;83!UBERON:0004237;1.20e-07;10!UBERON:0004695;1.20e-07;10!UBERON:0002111;1.20e-07;10!UBERON:0004178;1.20e-07;10!UBERON:0002619;2.07e-07;22!UBERON:0001950;3.60e-07;20 | |||
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| ||
|short_description=p1@CDH6 | |||
}} | }} |
Latest revision as of 14:41, 17 September 2015
Short description: | p1@CDH6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDH6_5end |
Coexpression cluster: | C1958_mesodermal_Lens_Smooth_Ciliary_Fibroblast_teratocarcinoma_leiomyoma |
Association with transcript: | 0bp_to_ENST00000265071, ENST00000506396, ENST00000514738_5end |
EntrezGene: | CDH6 |
HGNC: | 1765 |
UniProt: | P55285D6RF86 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 2.65e-17 | 32 |
smooth muscle cell | 1.42e-11 | 43 |
smooth muscle myoblast | 1.42e-11 | 43 |
electrically responsive cell | 3.22e-09 | 61 |
electrically active cell | 3.22e-09 | 61 |
muscle cell | 4.72e-08 | 55 |
aortic smooth muscle cell | 1.19e-07 | 10 |
muscle precursor cell | 1.80e-07 | 58 |
myoblast | 1.80e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.80e-07 | 58 |