FFCP PHASE1:Hg19::chr20:62680671..62680679,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54345 | |EntrezGene=54345 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11194 | |HGNC=11194 | ||
|TSSclassifier=strong | |||
|UniProt=P35713 | |UniProt=P35713 | ||
|association_with_transcript=-87bp_to_X65664_5end | |association_with_transcript=-87bp_to_X65664_5end | ||
|cluster_id=chr20:62680671..62680679,- | |||
|coexpression_cluster_id=C3312 | |coexpression_cluster_id=C3312 | ||
|description=CAGE_peak_2_at_SOX18_5end | |description=CAGE_peak_2_at_SOX18_5end | ||
|id=chr20:62680671..62680679,- | |id=chr20:62680671..62680679,- | ||
|ontology_enrichment_celltype=CL:0002139!1.77e-32!24;CL:0000115!2.17e-29!35;CL:0000071!2.86e-23!18;CL:0002546!2.86e-23!18;CL:0002078!3.65e-23!44;CL:0000213!1.81e-18!57;CL:0000215!1.81e-18!57;CL:1000413!1.93e-12!9;CL:0005020!7.90e-11!6;CL:0002138!7.90e-11!6;CL:0005022!7.90e-11!6;CL:0002544!1.05e-07!6;CL:0002543!1.25e-07!6 | |ontology_enrichment_celltype=CL:0002139!1.77e-32!24;CL:0000115!2.17e-29!35;CL:0000071!2.86e-23!18;CL:0002546!2.86e-23!18;CL:0002078!3.65e-23!44;CL:0000213!1.81e-18!57;CL:0000215!1.81e-18!57;CL:1000413!1.93e-12!9;CL:0005020!7.90e-11!6;CL:0002138!7.90e-11!6;CL:0005022!7.90e-11!6;CL:0002544!1.05e-07!6;CL:0002543!1.25e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002139;2.92e-60;24!CL:0000115;1.00e-58;36!CL:0000071;3.62e-50;18!CL:0002078;8.52e-39;45!CL:1000413;1.76e-30;9!CL:0000213;7.71e-26;58!CL:0000215;7.71e-26;58!CL:0002144;3.08e-24;3!CL:0002545;9.99e-17;2!CL:0002188;8.31e-15;5!CL:0002544;3.02e-12;6!CL:0002138;5.78e-12;6!CL:1000746;9.97e-11;7!CL:1000612;9.97e-11;7!CL:0000076;1.04e-08;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.23e-66,36;CL:0002139,1.11e-60,24;CL:0002078,1.10e-52,45;CL:0000071,2.22e-50,18;CL:0002546,2.22e-50,18;CL:0000213,3.63e-40,58;CL:0000215,3.63e-40,58;CL:1000413,1.86e-30,9;CL:0002144,2.44e-24,3;CL:0000222,1.48e-17,121;CL:0002545,8.55e-17,2;CL:0002188,9.14e-15,5;CL:0000076,4.42e-13,63;CL:0002544,3.67e-12,6;CL:0005020,3.81e-12,6;CL:0002138,3.81e-12,6;CL:0005022,3.81e-12,6;CL:1000746,1.07e-10,7;CL:1000612,1.07e-10,7 | |||
|ontology_enrichment_development_v019=CL:0002546;3.62e-50;18!CL:0005022;5.78e-12;6!UBERON:0010226;6.21e-09;1!CL:0000222;2.79e-08;121 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:114;1.80e-16;2!DOID:178;6.21e-09;1!DOID:326;6.21e-09;1!DOID:3978;6.21e-09;1!DOID:3394;6.21e-09;1!DOID:5844;6.21e-09;1!DOID:1287;1.09e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,2.99e-16,2;DOID:178,9.91e-09,1;DOID:326,9.91e-09,1;DOID:3978,9.91e-09,1;DOID:3394,9.91e-09,1;DOID:5844,9.91e-09,1;DOID:1287,1.40e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.32e-28!115;UBERON:0001986!2.86e-23!18;UBERON:0004638!2.86e-23!18;UBERON:0004852!2.86e-23!18;UBERON:0000487!4.75e-18!22;UBERON:0006914!4.20e-17!25;UBERON:0004111!9.41e-16!241;UBERON:0000477!1.27e-15!286;UBERON:0003915!1.93e-12!9;UBERON:0004700!1.93e-12!9;UBERON:0001917!1.93e-12!9;UBERON:0000055!2.00e-11!69;UBERON:0001473!1.48e-10!8;UBERON:0004536!1.48e-10!8;UBERON:0006558!1.48e-10!8;UBERON:0002465!1.55e-10!10;UBERON:0000025!2.23e-10!194;UBERON:0001009!7.72e-10!113;UBERON:0002049!5.67e-09!79;UBERON:0007798!5.67e-09!79;UBERON:0004872!6.01e-09!84;UBERON:0003914!1.97e-08!118;UBERON:0004535!5.45e-08!110;UBERON:0001638!7.80e-07!9;UBERON:0003920!7.80e-07!9;UBERON:0004582!7.80e-07!9 | |ontology_enrichment_uberon=UBERON:0007023!1.32e-28!115;UBERON:0001986!2.86e-23!18;UBERON:0004638!2.86e-23!18;UBERON:0004852!2.86e-23!18;UBERON:0000487!4.75e-18!22;UBERON:0006914!4.20e-17!25;UBERON:0004111!9.41e-16!241;UBERON:0000477!1.27e-15!286;UBERON:0003915!1.93e-12!9;UBERON:0004700!1.93e-12!9;UBERON:0001917!1.93e-12!9;UBERON:0000055!2.00e-11!69;UBERON:0001473!1.48e-10!8;UBERON:0004536!1.48e-10!8;UBERON:0006558!1.48e-10!8;UBERON:0002465!1.55e-10!10;UBERON:0000025!2.23e-10!194;UBERON:0001009!7.72e-10!113;UBERON:0002049!5.67e-09!79;UBERON:0007798!5.67e-09!79;UBERON:0004872!6.01e-09!84;UBERON:0003914!1.97e-08!118;UBERON:0004535!5.45e-08!110;UBERON:0001638!7.80e-07!9;UBERON:0003920!7.80e-07!9;UBERON:0004582!7.80e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;3.62e-50;18!UBERON:0001986;3.62e-50;18!UBERON:0004852;3.62e-50;18!UBERON:0000487;9.98e-41;22!UBERON:0006914;1.26e-35;25!UBERON:0003915;1.76e-30;9!UBERON:0004700;1.76e-30;9!UBERON:0001917;1.76e-30;9!UBERON:0000490;2.14e-24;33!UBERON:0010523;3.08e-24;3!UBERON:0001915;3.08e-24;3!UBERON:0001982;3.08e-24;3!UBERON:0005800;9.99e-17;2!UBERON:0001515;9.99e-17;2!UBERON:0000055;3.78e-16;65!UBERON:0007500;1.39e-13;56!UBERON:0001981;1.39e-13;56!UBERON:0004537;1.39e-13;56!UBERON:0003914;6.05e-12;74!UBERON:0000074;9.97e-11;7!UBERON:0001229;9.97e-11;7!UBERON:0002049;1.48e-10;75!UBERON:0007798;1.48e-10;75!UBERON:0001473;4.21e-09;8!UBERON:0004536;4.21e-09;8!UBERON:0006558;4.21e-09;8!UBERON:0002084;6.21e-09;1!UBERON:0002082;6.21e-09;1!UBERON:0000353;1.24e-08;15!UBERON:0001638;3.01e-08;9!UBERON:0003920;3.01e-08;9!UBERON:0004582;3.01e-08;9!UBERON:0000025;5.83e-08;93!UBERON:0001009;6.29e-08;112!UBERON:0002465;2.24e-07;10!UBERON:0004111;8.60e-07;130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,2.22e-50,18;UBERON:0001986,2.22e-50,18;UBERON:0004852,2.22e-50,18;UBERON:0000487,6.70e-41,22;UBERON:0006914,8.88e-36,25;UBERON:0003915,1.86e-30,9;UBERON:0004700,1.86e-30,9;UBERON:0001917,1.86e-30,9;UBERON:0000055,3.48e-26,68;UBERON:0010523,2.44e-24,3;UBERON:0001915,2.44e-24,3;UBERON:0001982,2.44e-24,3;UBERON:0002049,1.88e-22,78;UBERON:0007798,1.88e-22,78;UBERON:0001009,1.88e-21,112;UBERON:0007500,7.12e-20,59;UBERON:0001981,7.12e-20,59;UBERON:0004537,7.12e-20,59;UBERON:0006965,7.12e-20,59;UBERON:0004535,2.27e-17,109;UBERON:0005800,8.55e-17,2;UBERON:0001515,8.55e-17,2;UBERON:0003914,4.87e-16,117;UBERON:0004872,1.01e-15,83;UBERON:0004111,1.01e-11,240;UBERON:0010532,1.07e-10,7;UBERON:0000074,1.07e-10,7;UBERON:0001229,1.07e-10,7;UBERON:0001230,1.07e-10,7;UBERON:0003220,1.07e-10,7;UBERON:0005749,1.07e-10,7;UBERON:0004199,1.07e-10,7;UBERON:0004209,1.07e-10,7;UBERON:0004198,1.07e-10,7;UBERON:0000025,1.09e-09,192;UBERON:0005103,2.02e-09,8;UBERON:0000083,2.02e-09,8;UBERON:0009201,2.02e-09,8;UBERON:0006553,2.02e-09,8;UBERON:0003074,2.02e-09,8;UBERON:0003060,2.02e-09,8;UBERON:0001473,3.09e-09,8;UBERON:0004536,3.09e-09,8;UBERON:0006558,3.09e-09,8;UBERON:0002084,6.22e-09,1;UBERON:0002082,6.22e-09,1;UBERON:0010226,6.22e-09,1;UBERON:0000353,1.29e-08,15;UBERON:0000080,1.99e-08,9;UBERON:0002120,1.99e-08,9;UBERON:0004875,1.99e-08,9;UBERON:0005721,1.99e-08,9;UBERON:0005754,1.99e-08,9;UBERON:0007297,1.99e-08,9;UBERON:0001638,2.98e-08,9;UBERON:0003920,2.98e-08,9;UBERON:0004582,2.98e-08,9;UBERON:0003081,7.51e-08,203;UBERON:0002465,1.75e-07,10;UBERON:0004876,5.65e-07,11;UBERON:0000058,8.03e-07,19 | |||
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|short_description=p2@SOX18 | |short_description=p2@SOX18 | ||
}} | }} |
Latest revision as of 15:13, 17 September 2015
Short description: | p2@SOX18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SOX18_5end |
Coexpression cluster: | C3312_Endothelial_Renal_Hepatic_heart_umbilical_Lymphatic_adipose |
Association with transcript: | -87bp_to_X65664_5end |
EntrezGene: | SOX18 |
HGNC: | 11194 |
UniProt: | P35713 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.23e-66 | 36 |
endothelial cell of vascular tree | 1.11e-60 | 24 |
meso-epithelial cell | 1.10e-52 | 45 |
blood vessel endothelial cell | 2.22e-50 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.22e-50 | 18 |
lining cell | 3.63e-40 | 58 |
barrier cell | 3.63e-40 | 58 |
endothelial cell of artery | 1.86e-30 | 9 |
capillary endothelial cell | 2.44e-24 | 3 |
mesodermal cell | 1.48e-17 | 121 |
thoracic aorta endothelial cell | 8.55e-17 | 2 |
glomerular endothelial cell | 9.14e-15 | 5 |
squamous epithelial cell | 4.42e-13 | 63 |
aortic endothelial cell | 3.67e-12 | 6 |
lymphangioblast | 3.81e-12 | 6 |
endothelial cell of lymphatic vessel | 3.81e-12 | 6 |
vascular lymphangioblast | 3.81e-12 | 6 |
glomerular cell | 1.07e-10 | 7 |
kidney corpuscule cell | 1.07e-10 | 7 |
Ontology term | p-value | n |
---|---|---|
heart disease | 2.99e-16 | 2 |
vascular disease | 9.91e-09 | 1 |
ischemia | 9.91e-09 | 1 |
extrinsic cardiomyopathy | 9.91e-09 | 1 |
myocardial ischemia | 9.91e-09 | 1 |
myocardial infarction | 9.91e-09 | 1 |
cardiovascular system disease | 1.40e-08 | 4 |