FFCP PHASE1:Hg19::chr2:54785485..54785538,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6711 | |EntrezGene=6711 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11275 | |HGNC=11275 | ||
|TSSclassifier=strong | |||
|UniProt=Q01082 | |UniProt=Q01082 | ||
|association_with_transcript=0bp_to_ENST00000333896,NM_178313,uc002rxx.2_5end | |association_with_transcript=0bp_to_ENST00000333896,NM_178313,uc002rxx.2_5end | ||
|cluster_id=chr2:54785485..54785538,+ | |||
|description=CAGE_peak_3_at_SPTBN1_5end | |description=CAGE_peak_3_at_SPTBN1_5end | ||
|id=chr2:54785485..54785538,+ | |id=chr2:54785485..54785538,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.56e-28!254;CL:0000542!1.88e-13!53;CL:0000051!1.88e-13!53;CL:0000838!4.99e-13!52;CL:0000223!1.32e-10!59;CL:0000063!6.66e-10!578;CL:0000003!8.96e-10!722;CL:0002076!1.16e-09!43;CL:0000012!7.66e-08!682;CL:0000076!9.39e-08!62;CL:0000548!2.53e-07!679;CL:0000004!2.53e-07!679;CL:0000255!2.53e-07!679;CL:0002368!3.54e-07!13;CL:0002321!5.60e-07!248;CL:0000945!7.85e-07!24;CL:0000826!7.85e-07!24 | |ontology_enrichment_celltype=CL:0000066!1.56e-28!254;CL:0000542!1.88e-13!53;CL:0000051!1.88e-13!53;CL:0000838!4.99e-13!52;CL:0000223!1.32e-10!59;CL:0000063!6.66e-10!578;CL:0000003!8.96e-10!722;CL:0002076!1.16e-09!43;CL:0000012!7.66e-08!682;CL:0000076!9.39e-08!62;CL:0000548!2.53e-07!679;CL:0000004!2.53e-07!679;CL:0000255!2.53e-07!679;CL:0002368!3.54e-07!13;CL:0002321!5.60e-07!248;CL:0000945!7.85e-07!24;CL:0000826!7.85e-07!24 | ||
|ontology_enrichment_celltype_v019=CL:0002076;8.31e-09;42!CL:0000542;1.85e-07;53!CL:0002368;3.43e-07;13!CL:0000945;7.04e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.28e-29,253;CL:0000542,1.51e-13,53;CL:0000051,1.51e-13,53;CL:0000838,4.02e-13,52;CL:0000223,2.02e-11,58;CL:0002076,1.51e-10,42;CL:0000076,3.36e-07,63;CL:0002368,3.51e-07,13;CL:0002321,6.76e-07,250;CL:0000945,7.06e-07,24;CL:0000826,7.06e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000051;1.85e-07;53 | |||
|ontology_enrichment_disease=DOID:305!6.01e-10!106 | |ontology_enrichment_disease=DOID:305!6.01e-10!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.10e-10,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.94e-10!169;UBERON:0000925!5.94e-10!169;UBERON:0006595!5.94e-10!169;UBERON:0005911!2.00e-08!82;UBERON:0003914!2.30e-07!118;UBERON:0000466!4.41e-07!126;UBERON:0001007!4.46e-07!155;UBERON:0001555!4.46e-07!155;UBERON:0007026!4.46e-07!155;UBERON:0000077!5.92e-07!130;UBERON:0004921!9.21e-07!129;UBERON:0004185!9.21e-07!129 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,9.92e-10,160;UBERON:0000925,9.92e-10,160;UBERON:0006595,9.92e-10,160;UBERON:0005911,1.78e-08,82;UBERON:0003914,9.56e-08,117;UBERON:0001007,3.90e-07,145;UBERON:0001555,3.90e-07,145;UBERON:0007026,3.90e-07,145;UBERON:0004921,4.06e-07,118;UBERON:0005177,9.28e-07,101 | |||
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| ||
|short_description=p3@SPTBN1 | |short_description=p3@SPTBN1 | ||
}} | }} |
Latest revision as of 15:47, 17 September 2015
Short description: | p3@SPTBN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SPTBN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000333896, NM_178313, uc002rxx.2_5end |
EntrezGene: | SPTBN1 |
HGNC: | 11275 |
UniProt: | Q01082 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.28e-29 | 253 |
lymphocyte | 1.51e-13 | 53 |
common lymphoid progenitor | 1.51e-13 | 53 |
lymphoid lineage restricted progenitor cell | 4.02e-13 | 52 |
endodermal cell | 2.02e-11 | 58 |
endo-epithelial cell | 1.51e-10 | 42 |
squamous epithelial cell | 3.36e-07 | 63 |
respiratory epithelial cell | 3.51e-07 | 13 |
embryonic cell | 6.76e-07 | 250 |
lymphocyte of B lineage | 7.06e-07 | 24 |
pro-B cell | 7.06e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 9.92e-10 | 160 |
endoderm | 9.92e-10 | 160 |
presumptive endoderm | 9.92e-10 | 160 |
endo-epithelium | 1.78e-08 | 82 |
epithelial tube | 9.56e-08 | 117 |
digestive system | 3.90e-07 | 145 |
digestive tract | 3.90e-07 | 145 |
primitive gut | 3.90e-07 | 145 |
subdivision of digestive tract | 4.06e-07 | 118 |
trunk region element | 9.28e-07 | 101 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.10e-10 | 106 |