FFCP PHASE1:Hg19::chr8:27491533..27491544,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51435 | |EntrezGene=51435 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19000 | |HGNC=19000 | ||
|TSSclassifier=strong | |||
|UniProt=Q6AZY7 | |UniProt=Q6AZY7 | ||
|association_with_transcript=-32bp_to_NM_016240,NM_182826,uc003xga.1,uc003xgb.1_5end | |association_with_transcript=-32bp_to_NM_016240,NM_182826,uc003xga.1,uc003xgb.1_5end | ||
|cluster_id=chr8:27491533..27491544,+ | |||
|description=CAGE_peak_3_at_SCARA3_5end | |description=CAGE_peak_3_at_SCARA3_5end | ||
|id=chr8:27491533..27491544,+ | |id=chr8:27491533..27491544,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.22e-10!180 | |ontology_enrichment_celltype=CL:0000055!1.22e-10!180 | ||
|ontology_enrichment_celltype_v019=CL:0000327;1.15e-10;15!CL:0000708;1.73e-08;3!CL:0002582;2.31e-08;3!CL:0000153;5.59e-08;9!CL:0000447;5.59e-08;9!CL:0002570;1.83e-07;8!CL:0000499;2.07e-07;28!CL:0002577;8.12e-07;3 | |ontology_enrichment_celltype_v019=CL:0000327;1.15e-10;15!CL:0000708;1.73e-08;3!CL:0002582;2.31e-08;3!CL:0000153;5.59e-08;9!CL:0000447;5.59e-08;9!CL:0002570;1.83e-07;8!CL:0000499;2.07e-07;28!CL:0002577;8.12e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000327,6.34e-11,15;CL:0000708,1.81e-08,3;CL:0002582,2.84e-08,3;CL:0000153,2.84e-08,9;CL:0000447,2.84e-08,9;CL:0000499,1.16e-07,28;CL:0002570,1.95e-07,8;CL:0002577,4.41e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006241;8.12e-07;3!UBERON:0003057;8.12e-07;3 | |ontology_enrichment_development_v019=UBERON:0006241;8.12e-07;3!UBERON:0003057;8.12e-07;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.51e-18!82;UBERON:0003075!1.92e-18!86;UBERON:0007284!1.92e-18!86;UBERON:0005743!4.77e-18!86;UBERON:0002346!1.66e-17!90;UBERON:0000073!4.52e-16!94;UBERON:0001016!4.52e-16!94;UBERON:0004121!8.40e-14!169;UBERON:0000955!1.55e-13!69;UBERON:0006238!1.55e-13!69;UBERON:0000924!2.09e-13!173;UBERON:0006601!2.09e-13!173;UBERON:0002616!2.90e-13!59;UBERON:0001049!5.30e-13!57;UBERON:0005068!5.30e-13!57;UBERON:0006241!5.30e-13!57;UBERON:0007135!5.30e-13!57;UBERON:0000153!8.76e-13!129;UBERON:0007811!8.76e-13!129;UBERON:0000033!9.09e-13!123;UBERON:0003056!1.09e-10!61;UBERON:0000119!5.85e-10!312;UBERON:0000477!1.62e-09!286;UBERON:0007023!5.77e-09!115;UBERON:0000483!6.13e-09!309;UBERON:0000481!8.39e-09!347;UBERON:0000064!1.08e-08!219;UBERON:0003076!3.15e-08!15;UBERON:0003057!3.15e-08!15;UBERON:0000468!9.57e-08!659;UBERON:0000475!1.14e-07!365;UBERON:0002020!1.32e-07!34;UBERON:0003528!1.32e-07!34;UBERON:0002780!1.42e-07!41;UBERON:0001890!1.42e-07!41;UBERON:0006240!1.42e-07!41;UBERON:0002200!1.93e-07!11;UBERON:0006876!1.93e-07!11;UBERON:0001893!2.36e-07!34;UBERON:0002791!3.52e-07!33;UBERON:0003080!3.70e-07!42;UBERON:0004732!4.59e-07!13;UBERON:0001869!9.00e-07!32 | |ontology_enrichment_uberon=UBERON:0001017!1.51e-18!82;UBERON:0003075!1.92e-18!86;UBERON:0007284!1.92e-18!86;UBERON:0005743!4.77e-18!86;UBERON:0002346!1.66e-17!90;UBERON:0000073!4.52e-16!94;UBERON:0001016!4.52e-16!94;UBERON:0004121!8.40e-14!169;UBERON:0000955!1.55e-13!69;UBERON:0006238!1.55e-13!69;UBERON:0000924!2.09e-13!173;UBERON:0006601!2.09e-13!173;UBERON:0002616!2.90e-13!59;UBERON:0001049!5.30e-13!57;UBERON:0005068!5.30e-13!57;UBERON:0006241!5.30e-13!57;UBERON:0007135!5.30e-13!57;UBERON:0000153!8.76e-13!129;UBERON:0007811!8.76e-13!129;UBERON:0000033!9.09e-13!123;UBERON:0003056!1.09e-10!61;UBERON:0000119!5.85e-10!312;UBERON:0000477!1.62e-09!286;UBERON:0007023!5.77e-09!115;UBERON:0000483!6.13e-09!309;UBERON:0000481!8.39e-09!347;UBERON:0000064!1.08e-08!219;UBERON:0003076!3.15e-08!15;UBERON:0003057!3.15e-08!15;UBERON:0000468!9.57e-08!659;UBERON:0000475!1.14e-07!365;UBERON:0002020!1.32e-07!34;UBERON:0003528!1.32e-07!34;UBERON:0002780!1.42e-07!41;UBERON:0001890!1.42e-07!41;UBERON:0006240!1.42e-07!41;UBERON:0002200!1.93e-07!11;UBERON:0006876!1.93e-07!11;UBERON:0001893!2.36e-07!34;UBERON:0002791!3.52e-07!33;UBERON:0003080!3.70e-07!42;UBERON:0004732!4.59e-07!13;UBERON:0001869!9.00e-07!32 | ||
|ontology_enrichment_uberon_v019=UBERON:0004905;2.04e-09;8!UBERON:0000982;2.04e-09;8!UBERON:0004770;2.04e-09;8!UBERON:0002203;4.32e-09;6!UBERON:0001768;4.32e-09;6!UBERON:0002200;4.32e-09;6!UBERON:0003210;1.73e-08;3!UBERON:0011135;3.32e-07;5!UBERON:0002216;3.32e-07;5!UBERON:0011134;3.32e-07;5!UBERON:0002209;3.32e-07;5!UBERON:0002213;3.32e-07;5!UBERON:0007844;3.32e-07;5!UBERON:0011138;3.32e-07;5!UBERON:0001130;3.32e-07;5!UBERON:0001066;3.32e-07;5!UBERON:0001468;3.32e-07;5!UBERON:0001896;8.12e-07;3!UBERON:0002240;8.12e-07;3!UBERON:0005174;8.12e-07;3!UBERON:0005290;8.12e-07;3!UBERON:0001137;8.12e-07;3!UBERON:0001801;8.16e-07;14!UBERON:0006876;9.21e-07;11 | |ontology_enrichment_uberon_v019=UBERON:0004905;2.04e-09;8!UBERON:0000982;2.04e-09;8!UBERON:0004770;2.04e-09;8!UBERON:0002203;4.32e-09;6!UBERON:0001768;4.32e-09;6!UBERON:0002200;4.32e-09;6!UBERON:0003210;1.73e-08;3!UBERON:0011135;3.32e-07;5!UBERON:0002216;3.32e-07;5!UBERON:0011134;3.32e-07;5!UBERON:0002209;3.32e-07;5!UBERON:0002213;3.32e-07;5!UBERON:0007844;3.32e-07;5!UBERON:0011138;3.32e-07;5!UBERON:0001130;3.32e-07;5!UBERON:0001066;3.32e-07;5!UBERON:0001468;3.32e-07;5!UBERON:0001896;8.12e-07;3!UBERON:0002240;8.12e-07;3!UBERON:0005174;8.12e-07;3!UBERON:0005290;8.12e-07;3!UBERON:0001137;8.12e-07;3!UBERON:0001801;8.16e-07;14!UBERON:0006876;9.21e-07;11 | ||
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| ||
|short_description=p3@SCARA3 | |short_description=p3@SCARA3 | ||
}} | }} |
Latest revision as of 19:55, 17 September 2015
Short description: | p3@SCARA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SCARA3_5end |
Coexpression cluster: | NA |
Association with transcript: | -32bp_to_NM_016240, NM_182826, uc003xga.1, uc003xgb.1_5end |
EntrezGene: | SCARA3 |
HGNC: | 19000 |
UniProt: | Q6AZY7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extracellular matrix secreting cell | 6.34e-11 | 15 |
leptomeningeal cell | 1.81e-08 | 3 |
visceral preadipocyte | 2.84e-08 | 3 |
GAG secreting cell | 2.84e-08 | 9 |
carbohydrate secreting cell | 2.84e-08 | 9 |
stromal cell | 1.16e-07 | 28 |
mesenchymal stem cell of adipose | 1.95e-07 | 8 |
placental epithelial cell | 4.41e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
vasculature of eye | 1.34e-09 | 6 |
uvea | 1.34e-09 | 6 |
vasculature of head | 1.34e-09 | 6 |
articulation | 4.51e-09 | 8 |
skeletal joint | 4.51e-09 | 8 |
articular system | 4.51e-09 | 8 |
blood-cerebrospinal fluid barrier | 1.81e-08 | 3 |
neural plate | 2.00e-08 | 82 |
presumptive neural plate | 2.00e-08 | 82 |
posterior neural tube | 5.24e-08 | 15 |
chordal neural plate | 5.24e-08 | 15 |
neurectoderm | 8.93e-08 | 86 |
vasculature of organ | 4.47e-07 | 11 |
medulla oblongata | 5.46e-07 | 3 |
myelencephalon | 5.46e-07 | 3 |
future myelencephalon | 5.46e-07 | 3 |
anterior segment of eyeball | 5.93e-07 | 14 |
intervertebral cartilage | 8.29e-07 | 5 |
symphysis | 8.29e-07 | 5 |
nonsynovial joint | 8.29e-07 | 5 |
fibrous joint | 8.29e-07 | 5 |
cartilaginous joint | 8.29e-07 | 5 |
developing mesenchymal condensation | 8.29e-07 | 5 |
pre-cartilage condensation | 8.29e-07 | 5 |
cartilaginous condensation | 8.29e-07 | 5 |
cartilage element | 8.29e-07 | 5 |
post-cranial axial skeletal system | 8.29e-07 | 5 |
vertebral column | 8.29e-07 | 5 |
intervertebral disk | 8.29e-07 | 5 |
intervertebral joint | 8.29e-07 | 5 |
central nervous system | 9.54e-07 | 81 |