FFCP PHASE1:Hg19::chr13:60971348..60971372,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr13:60971348..60971372,+
|short_description=p2@TDRD3
|description=CAGE_peak_2_at_TDRD3_5end
|association_with_transcript=-54bp_to_ENST00000535286,NM_001146070...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=81550 | |EntrezGene=81550 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20612 | |HGNC=20612 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H7E2 | |UniProt=Q9H7E2 | ||
|association_with_transcript=-54bp_to_ENST00000535286,NM_001146070,uc010aeg.2_5end | |||
|cluster_id=chr13:60971348..60971372,+ | |||
|description=CAGE_peak_2_at_TDRD3_5end | |||
|id=chr13:60971348..60971372,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.68e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.33e-30!115;UBERON:0001049!3.01e-16!57;UBERON:0005068!3.01e-16!57;UBERON:0006241!3.01e-16!57;UBERON:0007135!3.01e-16!57;UBERON:0000955!1.86e-13!69;UBERON:0006238!1.86e-13!69;UBERON:0002616!2.26e-13!59;UBERON:0001017!2.85e-13!82;UBERON:0000073!3.31e-13!94;UBERON:0001016!3.31e-13!94;UBERON:0003080!3.43e-13!42;UBERON:0002780!5.74e-13!41;UBERON:0001890!5.74e-13!41;UBERON:0006240!5.74e-13!41;UBERON:0005743!8.88e-12!86;UBERON:0002020!1.41e-10!34;UBERON:0003528!1.41e-10!34;UBERON:0001893!2.57e-10!34;UBERON:0002791!6.81e-10!33;UBERON:0001869!7.89e-10!32;UBERON:0000153!1.09e-09!129;UBERON:0007811!1.09e-09!129;UBERON:0000033!1.14e-08!123;UBERON:0002346!2.33e-08!90;UBERON:0001950!2.72e-08!20;UBERON:0002619!3.10e-08!22;UBERON:0003075!5.47e-08!86;UBERON:0007284!5.47e-08!86;UBERON:0000924!9.85e-08!173;UBERON:0006601!9.85e-08!173;UBERON:0004121!2.22e-07!169;UBERON:0000956!5.91e-07!25;UBERON:0000203!5.91e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.70e-09;41!UBERON:0001890;1.70e-09;41!UBERON:0007023;4.92e-09;114!UBERON:0003528;4.99e-09;34!UBERON:0002020;4.99e-09;34!UBERON:0001893;6.29e-09;34!UBERON:0002791;6.98e-09;32!UBERON:0001869;7.60e-09;32!UBERON:0001950;2.61e-08;20!UBERON:0000073;2.78e-08;53!UBERON:0002616;2.78e-08;53!UBERON:0002619;4.21e-08;22!UBERON:0001016;5.81e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.18e-30,114;UBERON:0001049,8.66e-16,56;UBERON:0005068,8.66e-16,56;UBERON:0006241,8.66e-16,56;UBERON:0007135,8.66e-16,56;UBERON:0001016,2.72e-14,89;UBERON:0000073,3.01e-14,53;UBERON:0002616,3.01e-14,53;UBERON:0000955,5.43e-13,68;UBERON:0006238,5.43e-13,68;UBERON:0002780,5.75e-13,41;UBERON:0001890,5.75e-13,41;UBERON:0003080,5.75e-13,41;UBERON:0006240,5.75e-13,41;UBERON:0001017,7.79e-13,81;UBERON:0003528,1.48e-10,34;UBERON:0002020,1.48e-10,34;UBERON:0001893,2.71e-10,34;UBERON:0001869,8.40e-10,32;UBERON:0002791,1.05e-09,32;UBERON:0002346,6.05e-09,86;UBERON:0003075,1.44e-08,82;UBERON:0007284,1.44e-08,82;UBERON:0001950,2.33e-08,20;UBERON:0002619,2.66e-08,22;UBERON:0004121,7.57e-08,171;UBERON:0000924,7.57e-08,171;UBERON:0006601,7.57e-08,171;UBERON:0000956,6.57e-07,25;UBERON:0000203,6.57e-07,25 | |||
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| ||
|short_description=p2@TDRD3 | |||
}} | }} |
Latest revision as of 20:34, 17 September 2015
Short description: | p2@TDRD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TDRD3_5end |
Coexpression cluster: | NA |
Association with transcript: | -54bp_to_ENST00000535286, NM_001146070, uc010aeg.2_5end |
EntrezGene: | TDRD3 |
HGNC: | 20612 |
UniProt: | Q9H7E2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 5.18e-30 | 114 |
neural tube | 8.66e-16 | 56 |
neural rod | 8.66e-16 | 56 |
future spinal cord | 8.66e-16 | 56 |
neural keel | 8.66e-16 | 56 |
nervous system | 2.72e-14 | 89 |
regional part of nervous system | 3.01e-14 | 53 |
regional part of brain | 3.01e-14 | 53 |
brain | 5.43e-13 | 68 |
future brain | 5.43e-13 | 68 |
regional part of forebrain | 5.75e-13 | 41 |
forebrain | 5.75e-13 | 41 |
anterior neural tube | 5.75e-13 | 41 |
future forebrain | 5.75e-13 | 41 |
central nervous system | 7.79e-13 | 81 |
brain grey matter | 1.48e-10 | 34 |
gray matter | 1.48e-10 | 34 |
telencephalon | 2.71e-10 | 34 |
cerebral hemisphere | 8.40e-10 | 32 |
regional part of telencephalon | 1.05e-09 | 32 |
neurectoderm | 6.05e-09 | 86 |
neural plate | 1.44e-08 | 82 |
presumptive neural plate | 1.44e-08 | 82 |
neocortex | 2.33e-08 | 20 |
regional part of cerebral cortex | 2.66e-08 | 22 |
ectoderm-derived structure | 7.57e-08 | 171 |
ectoderm | 7.57e-08 | 171 |
presumptive ectoderm | 7.57e-08 | 171 |
cerebral cortex | 6.57e-07 | 25 |
pallium | 6.57e-07 | 25 |