FFCP PHASE1:Hg19::chr3:25679797..25679810,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7155 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11990 | |||
|TSSclassifier=strong | |||
|UniProt=Q02880 | |||
|association_with_transcript=-45bp_to_M27504_5end | |||
|cluster_id=chr3:25679797..25679810,- | |||
|description=CAGE_peak_2_at_TOP2B_5end | |||
|id=chr3:25679797..25679810,- | |||
|ontology_enrichment_celltype=CL:0000037!1.02e-11!172;CL:0000566!1.02e-11!172;CL:0002032!2.55e-11!165;CL:0000837!2.55e-11!165;CL:0000988!3.76e-11!182;CL:0000542!2.35e-10!53;CL:0000051!2.35e-10!53;CL:0000838!4.29e-10!52;CL:0000738!1.33e-08!140;CL:0002031!1.51e-07!124;CL:0002087!3.21e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000542;3.62e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,4.46e-10,168;CL:0000988,5.02e-10,177;CL:0000542,8.45e-10,53;CL:0000051,8.45e-10,53;CL:0000838,1.81e-09,52;CL:0002032,1.88e-09,161;CL:0000837,1.88e-09,161 | |||
|ontology_enrichment_development_v019=CL:0000051;3.62e-07;53 | |||
|ontology_enrichment_disease=DOID:2531!5.26e-07!51;DOID:0060083!5.26e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,3.44e-07,51;DOID:0060083,3.44e-07,51;DOID:1240,5.80e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.70e-23!115;UBERON:0001049!1.33e-16!57;UBERON:0005068!1.33e-16!57;UBERON:0006241!1.33e-16!57;UBERON:0007135!1.33e-16!57;UBERON:0002780!6.00e-14!41;UBERON:0001890!6.00e-14!41;UBERON:0006240!6.00e-14!41;UBERON:0003080!8.00e-14!42;UBERON:0001017!2.87e-13!82;UBERON:0002616!3.89e-13!59;UBERON:0000955!5.19e-13!69;UBERON:0006238!5.19e-13!69;UBERON:0002020!2.55e-12!34;UBERON:0003528!2.55e-12!34;UBERON:0001893!3.71e-12!34;UBERON:0005743!4.10e-12!86;UBERON:0002791!6.92e-12!33;UBERON:0002346!1.20e-11!90;UBERON:0000073!1.23e-11!94;UBERON:0001016!1.23e-11!94;UBERON:0001869!2.24e-11!32;UBERON:0003075!2.00e-10!86;UBERON:0007284!2.00e-10!86;UBERON:0000956!1.98e-09!25;UBERON:0000203!1.98e-09!25;UBERON:0002619!3.22e-09!22;UBERON:0001950!2.33e-08!20;UBERON:0003056!2.09e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002791;1.08e-11;32!UBERON:0003528;2.30e-11;34!UBERON:0002020;2.30e-11;34!UBERON:0002780;3.08e-11;41!UBERON:0001890;3.08e-11;41!UBERON:0002619;3.31e-11;22!UBERON:0001869;3.77e-11;32!UBERON:0001893;4.38e-11;34!UBERON:0000073;1.75e-10;53!UBERON:0002616;1.75e-10;53!UBERON:0000956;2.26e-10;25!UBERON:0000203;2.26e-10;25!UBERON:0001950;5.66e-10;20!UBERON:0007023;1.03e-07;114!UBERON:0000178;1.76e-07;15!UBERON:0000179;1.76e-07;15!UBERON:0000463;1.76e-07;15!UBERON:0000922;4.98e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.84e-23,114;UBERON:0001049,1.70e-19,56;UBERON:0005068,1.70e-19,56;UBERON:0006241,1.70e-19,56;UBERON:0007135,1.70e-19,56;UBERON:0000073,1.78e-17,53;UBERON:0002616,1.78e-17,53;UBERON:0002346,7.06e-16,86;UBERON:0002780,1.46e-15,41;UBERON:0001890,1.46e-15,41;UBERON:0003080,1.46e-15,41;UBERON:0006240,1.46e-15,41;UBERON:0003528,3.71e-14,34;UBERON:0002020,3.71e-14,34;UBERON:0003075,3.81e-14,82;UBERON:0007284,3.81e-14,82;UBERON:0001893,6.00e-14,34;UBERON:0002791,2.82e-13,32;UBERON:0001869,6.90e-13,32;UBERON:0000955,7.08e-13,68;UBERON:0006238,7.08e-13,68;UBERON:0001017,6.68e-12,81;UBERON:0002619,1.48e-11,22;UBERON:0001016,3.97e-11,89;UBERON:0000956,1.20e-10,25;UBERON:0000203,1.20e-10,25;UBERON:0001950,2.28e-10,20;UBERON:0003056,5.52e-10,61;UBERON:0010371,1.95e-09,104;UBERON:0000178,1.34e-07,15;UBERON:0000179,1.34e-07,15;UBERON:0000463,1.34e-07,15 | |||
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| |||
|short_description=p2@TOP2B | |||
}} |
Latest revision as of 20:40, 17 September 2015
Short description: | p2@TOP2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TOP2B_5end |
Coexpression cluster: | NA |
Association with transcript: | -45bp_to_M27504_5end |
EntrezGene: | TOP2B |
HGNC: | 11990 |
UniProt: | Q02880 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 4.46e-10 | 168 |
hematopoietic cell | 5.02e-10 | 177 |
lymphocyte | 8.45e-10 | 53 |
common lymphoid progenitor | 8.45e-10 | 53 |
lymphoid lineage restricted progenitor cell | 1.81e-09 | 52 |
hematopoietic oligopotent progenitor cell | 1.88e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.88e-09 | 161 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.84e-23 | 114 |
neural tube | 1.70e-19 | 56 |
neural rod | 1.70e-19 | 56 |
future spinal cord | 1.70e-19 | 56 |
neural keel | 1.70e-19 | 56 |
regional part of nervous system | 1.78e-17 | 53 |
regional part of brain | 1.78e-17 | 53 |
neurectoderm | 7.06e-16 | 86 |
regional part of forebrain | 1.46e-15 | 41 |
forebrain | 1.46e-15 | 41 |
anterior neural tube | 1.46e-15 | 41 |
future forebrain | 1.46e-15 | 41 |
brain grey matter | 3.71e-14 | 34 |
gray matter | 3.71e-14 | 34 |
neural plate | 3.81e-14 | 82 |
presumptive neural plate | 3.81e-14 | 82 |
telencephalon | 6.00e-14 | 34 |
regional part of telencephalon | 2.82e-13 | 32 |
cerebral hemisphere | 6.90e-13 | 32 |
brain | 7.08e-13 | 68 |
future brain | 7.08e-13 | 68 |
central nervous system | 6.68e-12 | 81 |
regional part of cerebral cortex | 1.48e-11 | 22 |
nervous system | 3.97e-11 | 89 |
cerebral cortex | 1.20e-10 | 25 |
pallium | 1.20e-10 | 25 |
neocortex | 2.28e-10 | 20 |
pre-chordal neural plate | 5.52e-10 | 61 |
ecto-epithelium | 1.95e-09 | 104 |
blood | 1.34e-07 | 15 |
haemolymphatic fluid | 1.34e-07 | 15 |
organism substance | 1.34e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 3.44e-07 | 51 |
immune system cancer | 3.44e-07 | 51 |
leukemia | 5.80e-07 | 39 |