FFCP PHASE1:Hg19::chr10:29811606..29811631,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6840 | |EntrezGene=6840 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11480 | |HGNC=11480 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-42bp_to_uc010qdw.1_5end | |association_with_transcript=-42bp_to_uc010qdw.1_5end | ||
|cluster_id=chr10:29811606..29811631,- | |||
|coexpression_cluster_id=C610 | |coexpression_cluster_id=C610 | ||
|description=CAGE_peak_15_at_SVIL_5end | |description=CAGE_peak_15_at_SVIL_5end | ||
|id=chr10:29811606..29811631,- | |id=chr10:29811606..29811631,- | ||
|ontology_enrichment_celltype=CL:0000710!2.03e-19!20;CL:0000147!4.43e-18!14;CL:0000148!7.61e-18!10;CL:0000541!7.61e-18!10;CL:0000075!1.46e-17!27;CL:0002077!2.84e-10!33;CL:0000325!2.76e-09!39;CL:0002567!2.41e-08!3;CL:0000133!3.74e-08!59;CL:0000064!1.11e-07!3;CL:0005012!1.11e-07!3;CL:0000067!1.11e-07!3;CL:0002304!1.11e-07!3;CL:0000333!8.25e-07!41 | |ontology_enrichment_celltype=CL:0000710!2.03e-19!20;CL:0000147!4.43e-18!14;CL:0000148!7.61e-18!10;CL:0000541!7.61e-18!10;CL:0000075!1.46e-17!27;CL:0002077!2.84e-10!33;CL:0000325!2.76e-09!39;CL:0002567!2.41e-08!3;CL:0000133!3.74e-08!59;CL:0000064!1.11e-07!3;CL:0005012!1.11e-07!3;CL:0000067!1.11e-07!3;CL:0002304!1.11e-07!3;CL:0000333!8.25e-07!41 | ||
|ontology_enrichment_celltype_v019=CL:0000148;2.84e-74;10!CL:0000147;5.10e-53;14!CL:0002567;2.24e-46;3!CL:0000710;4.68e-37;20!CL:0000075;2.21e-27;27!CL:0002077;3.60e-19;34!CL:0002566;2.08e-16;1!CL:0002589;7.21e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,3.01e-74,10;CL:0000541,3.01e-74,10;CL:0000147,5.31e-53,14;CL:0002567,1.65e-46,3;CL:0000710,4.81e-37,20;CL:0000075,2.25e-27,27;CL:0002077,1.13e-21,34;CL:0000333,4.62e-17,41;CL:0002566,2.63e-16,1;CL:0000133,6.65e-12,59;CL:0000221,9.93e-10,72;CL:0002589,6.94e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0003056;4.93e-21;3!UBERON:0005425;2.08e-16;1!CL:0000133;9.00e-07;59 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1909;3.57e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,3.43e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0000488!1.43e-09!4;UBERON:0002200!4.66e-09!11;UBERON:0006876!4.66e-09!11;UBERON:0007625!5.79e-09!11;UBERON:0002104!8.65e-09!21;UBERON:0001778!1.11e-07!3;UBERON:0001775!1.11e-07!3;UBERON:0000970!1.99e-07!20;UBERON:0001032!2.05e-07!24;UBERON:0004456!2.05e-07!24 | |ontology_enrichment_uberon=UBERON:0000488!1.43e-09!4;UBERON:0002200!4.66e-09!11;UBERON:0006876!4.66e-09!11;UBERON:0007625!5.79e-09!11;UBERON:0002104!8.65e-09!21;UBERON:0001778!1.11e-07!3;UBERON:0001775!1.11e-07!3;UBERON:0000970!1.99e-07!20;UBERON:0001032!2.05e-07!24;UBERON:0004456!2.05e-07!24 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;2.08e-16;1!UBERON:0001785;2.08e-16;1!UBERON:0002464;2.08e-16;1!UBERON:0004904;2.08e-16;1!UBERON:0001021;2.08e-16;1!UBERON:0003714;7.21e-09;2!UBERON:0005162;7.21e-09;2!UBERON:0000122;7.21e-09;2!UBERON:0001529;7.21e-09;2!UBERON:0007204;7.21e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,2.25e-16,1;UBERON:0001785,2.25e-16,1;UBERON:0002464,2.25e-16,1;UBERON:0004904,2.25e-16,1;UBERON:0001021,2.25e-16,1;UBERON:0003902,2.25e-16,1;UBERON:0005425,2.25e-16,1;UBERON:0000966,5.93e-11,6;UBERON:0005388,5.93e-11,6;UBERON:0001802,5.93e-11,6;UBERON:0001529,6.94e-09,2;UBERON:0007204,6.94e-09,2;UBERON:0003714,7.49e-09,2;UBERON:0005162,7.49e-09,2;UBERON:0000122,7.49e-09,2 | |||
|phase1_expression=0,0,0.140954404095971,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0,0,0,0,0,0,0.567208902984407,0.443458794925128,0.527008714158756,0.130979075497713,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0.323292113637624,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0.115930404975077,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0159663086747,8.78573378784039,4.68869788840188,1.71072446022705,12.5449541098055,5.70651809903443,4.57322292208925,0,1.74384027533312,0.1466765716419,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0.157702415033935,0.234282829985426,0.300946099727719,0,0,0,0,0,0.587403472388222,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0.0915694648183434,0.660075999364704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532306030317022,0.869932992075073,1.66791797193528,0.715624433709956,0,0.632758849437452,0.190630193923825,0,0,0,0,0.179872457583315,0,0.235624804691373,0,0,0,0,0.487426979262569,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31396051279005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0.788057072991982,0.734364233889974,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0.339936274560377,0.146552233678082,0,0,0,0,0,0.106787412567695,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0,0,12.5868767559568,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0.521745061811734,0,0,0.406870733204662,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0.327130788511688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0.397832444232549,0.300841313397029,0,0.781514011233092,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,1.00067161847319,0,0,0,0,0,0,0,0,0.236664001461131,0.681707238073262,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0.297046400327086,0.8453114551668,0,0.0939839179798536,0.193373663920732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0.140954404095971,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0,0,0,0,0,0,0.567208902984407,0.443458794925128,0.527008714158756,0.130979075497713,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0.323292113637624,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0.115930404975077,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0159663086747,8.78573378784039,4.68869788840188,1.71072446022705,12.5449541098055,5.70651809903443,4.57322292208925,0,1.74384027533312,0.1466765716419,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0.157702415033935,0.234282829985426,0.300946099727719,0,0,0,0,0,0.587403472388222,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0.0915694648183434,0.660075999364704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532306030317022,0.869932992075073,1.66791797193528,0.715624433709956,0,0.632758849437452,0.190630193923825,0,0,0,0,0.179872457583315,0,0.235624804691373,0,0,0,0,0.487426979262569,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31396051279005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0.788057072991982,0.734364233889974,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0.339936274560377,0.146552233678082,0,0,0,0,0,0.106787412567695,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0,0,12.5868767559568,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0.521745061811734,0,0,0.406870733204662,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0.327130788511688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0.397832444232549,0.300841313397029,0,0.781514011233092,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,1.00067161847319,0,0,0,0,0,0,0,0,0.236664001461131,0.681707238073262,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0.297046400327086,0.8453114551668,0,0.0939839179798536,0.193373663920732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p15@SVIL | |short_description=p15@SVIL | ||
}} | }} |
Latest revision as of 20:52, 17 September 2015
Short description: | p15@SVIL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_SVIL_5end |
Coexpression cluster: | C610_melanoma_Melanocyte_migratory_mycosis_cerebellum_epithelioid_retina |
Association with transcript: | -42bp_to_uc010qdw.1_5end |
EntrezGene: | SVIL |
HGNC: | 11480 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 3.01e-74 | 10 |
melanoblast | 3.01e-74 | 10 |
pigment cell | 5.31e-53 | 14 |
light melanocyte | 1.65e-46 | 3 |
neurecto-epithelial cell | 4.81e-37 | 20 |
columnar/cuboidal epithelial cell | 2.25e-27 | 27 |
ecto-epithelial cell | 1.13e-21 | 34 |
migratory neural crest cell | 4.62e-17 | 41 |
dark melanocyte | 2.63e-16 | 1 |
neurectodermal cell | 6.65e-12 | 59 |
ectodermal cell | 9.93e-10 | 72 |
smooth muscle cell of the brachiocephalic vasculature | 6.94e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 2.25e-16 | 1 |
cranial nerve | 2.25e-16 | 1 |
nerve trunk | 2.25e-16 | 1 |
nerve connecting eye with brain | 2.25e-16 | 1 |
nerve | 2.25e-16 | 1 |
retinal neural layer | 2.25e-16 | 1 |
presumptive neural retina | 2.25e-16 | 1 |
retina | 5.93e-11 | 6 |
photoreceptor array | 5.93e-11 | 6 |
posterior segment of eyeball | 5.93e-11 | 6 |
brachiocephalic artery | 6.94e-09 | 2 |
brachiocephalic vasculature | 6.94e-09 | 2 |
neural tissue | 7.49e-09 | 2 |
multi cell component structure | 7.49e-09 | 2 |
neuron projection bundle | 7.49e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
melanoma | 3.43e-09 | 2 |