FFCP PHASE1:Hg19::chr17:76355172..76355183,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9021 | |EntrezGene=9021 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=19391 | |HGNC=19391 | ||
|TSSclassifier=strong | |||
|UniProt=O14543,Q5U0H7,Q6FI39 | |UniProt=O14543,Q5U0H7,Q6FI39 | ||
|association_with_transcript=0bp_to_AB006967,AB464720,AF159854,AM392896,AM393146,AM393491,BT019544,CR536497,CR541694,CU687476_5end | |association_with_transcript=0bp_to_AB006967,AB464720,AF159854,AM392896,AM393146,AM393491,BT019544,CR536497,CR541694,CU687476_5end | ||
|cluster_id=chr17:76355172..76355183,- | |||
|coexpression_cluster_id=C3691 | |coexpression_cluster_id=C3691 | ||
|description=CAGE_peak_14_at_SOCS3_5end | |description=CAGE_peak_14_at_SOCS3_5end | ||
|id=chr17:76355172..76355183,- | |id=chr17:76355172..76355183,- | ||
|ontology_enrichment_celltype=CL:0002057!3.63e-18!42;CL:0000860!1.56e-17!45;CL:0000766!2.11e-17!76;CL:0000839!5.69e-15!70;CL:0000557!1.32e-14!71;CL:0002194!8.75e-14!63;CL:0000576!8.75e-14!63;CL:0000040!8.75e-14!63;CL:0000559!8.75e-14!63;CL:0002009!4.62e-13!65;CL:0000738!3.63e-12!140;CL:0000763!1.00e-10!112;CL:0000049!1.00e-10!112;CL:0002031!4.06e-10!124;CL:0000988!1.32e-09!182;CL:0002087!2.49e-09!119;CL:0000037!7.55e-09!172;CL:0000566!7.55e-09!172;CL:0002032!1.17e-08!165;CL:0000837!1.17e-08!165 | |ontology_enrichment_celltype=CL:0002057!3.63e-18!42;CL:0000860!1.56e-17!45;CL:0000766!2.11e-17!76;CL:0000839!5.69e-15!70;CL:0000557!1.32e-14!71;CL:0002194!8.75e-14!63;CL:0000576!8.75e-14!63;CL:0000040!8.75e-14!63;CL:0000559!8.75e-14!63;CL:0002009!4.62e-13!65;CL:0000738!3.63e-12!140;CL:0000763!1.00e-10!112;CL:0000049!1.00e-10!112;CL:0002031!4.06e-10!124;CL:0000988!1.32e-09!182;CL:0002087!2.49e-09!119;CL:0000037!7.55e-09!172;CL:0000566!7.55e-09!172;CL:0002032!1.17e-08!165;CL:0000837!1.17e-08!165 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.00e-39;33!CL:0002057;3.00e-39;33!CL:0000473;9.58e-29;39!CL:0000234;9.58e-29;39!CL:0000097;6.31e-22;5!CL:0000576;4.73e-17;48!CL:0000766;9.94e-17;69!CL:0000763;1.04e-13;100!CL:0000163;1.83e-12;9!CL:0002087;1.10e-08;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000839,1.88e-32,66;CL:0000860,3.50e-32,42;CL:0002057,3.50e-32,42;CL:0000557,5.98e-32,67;CL:0000766,1.20e-29,72;CL:0000473,5.35e-28,48;CL:0000234,5.35e-28,48;CL:0002194,3.93e-22,59;CL:0000576,3.93e-22,59;CL:0000040,3.93e-22,59;CL:0000559,3.93e-22,59;CL:0000097,5.11e-22,5;CL:0002028,5.11e-22,5;CL:0002009,2.25e-21,61;CL:0002031,7.02e-20,120;CL:0000763,2.78e-19,108;CL:0000049,2.78e-19,108;CL:0000738,2.44e-17,136;CL:0002032,2.29e-14,161;CL:0000837,2.29e-14,161;CL:0000037,1.08e-13,168;CL:0000988,6.71e-13,177;CL:0002087,6.78e-13,115;CL:0000163,1.63e-12,9 | |||
|ontology_enrichment_development_v019=CL:0002057;3.56e-24;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!8.09e-13!86;UBERON:0002371!9.62e-13!80;UBERON:0004765!2.61e-12!101;UBERON:0001434!2.61e-12!101;UBERON:0002193!8.29e-12!112;UBERON:0002390!6.90e-11!102;UBERON:0003061!6.90e-11!102;UBERON:0002405!1.33e-10!115 | |ontology_enrichment_uberon=UBERON:0001474!8.09e-13!86;UBERON:0002371!9.62e-13!80;UBERON:0004765!2.61e-12!101;UBERON:0001434!2.61e-12!101;UBERON:0002193!8.29e-12!112;UBERON:0002390!6.90e-11!102;UBERON:0003061!6.90e-11!102;UBERON:0002405!1.33e-10!115 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.10e-28,76;UBERON:0001474,7.18e-26,82;UBERON:0004765,1.92e-23,90;UBERON:0002405,1.22e-22,93;UBERON:0002390,2.08e-21,98;UBERON:0003061,2.08e-21,98;UBERON:0001434,5.98e-21,100;UBERON:0002193,2.78e-19,108;UBERON:0002204,7.32e-12,167;UBERON:0003081,1.99e-09,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0.331397375727916,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0,0,0,0,0.393364276848904,0,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0.601633342410425,0.651032612147555,0,0,0.257575567634187,0,0,0,0.464858073811369,0.411167888021826,0.309706370895104,2.58923153089935,1.0246428261164,0.47296445977717,2.06847408441971,0.645484683583826,1.35426486594342,0.188242339542605,0.545812300115692,0,4.28517449319264,0.320929027076094,1.91801137739712,0.659702600373432,1.19678194572979,0.852449501065388,1.45104619314292,1.70215567407342,0.622822248995575,1.25624332628372,0,0.434377689410233,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764546456250458,1.32171328579026,0,0,0,0.786021525498329,1.02800749499755,0,0.32592226663359,0,0,0,0.589211814949674,0,0,0,0,0,0,0,0.296573126324121,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0,0.0945348171640679,0,0.175669571386252,0.0654895377488563,0,0,0.324547393654683,0,0,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0.354668382198357,0,0,0,0,0,0.163461903113459,0.151357427644931,0,0,0,0,0,0,0,0.140450806702248,0,0.122834317311768,0,0,0.494533858557114,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0.464367928031979,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86595303986695,2.45003920808834,2.01987893482208,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0,0,0.215627574859517,0.256686072559497,0.254094624222463,0,0,0.167516265334349,0,0.749007023947182,0,0.828831026872071,0.12269149171914,0,0,0,0,0,0,0,2.27407504055985,0,0,0,0.0868836144680828,0.391602314925481,0,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.0821271560138091,0,0.116210378459959,0,0,0.184161977871793,0.34444334449382,0.182091168006717,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0.096670718292122,0,0,0.137836572484531,0.107420244868274,0,0,0,0,0,0,0.10115778085555,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0.284136146806413,0,0,0,0,0,0,0.494411622680279,0,0,0,0,0.20453736500431,0,0,0,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0.0769502585037971,0,0.23056390438806,0,0,0.31900115973192,0.0915975934018623,0,0,0,0,0,0.19606253431774,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0.104421949505455,0.067401132980677,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0.105600336519406,0.537862017998534,0,0,0,0,0.542999601753713,0,0,0,0,0,0,0.146552233678082,0,0,0.13223260174269,0,0,0.533937062838473,0.157204305099666,0,0.496166021811951,0,0,0,0,0.2506898940227,0,0.327872630709804,0,0,0.122026264901963,0.1251909307065,0,0.110929051536852,0.0620964029413835,0,0.124980407962107,0,0.570930667089935,0.235265819698172,0,0,0,0,0,0.378806010550178,0,0,0,0.302461847526478,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0.176689145945881,0,0,0,0,0,0,0,0,0.163565394255844,0.327609848846413,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0.781078098613847,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0.342976018874837,0,0,0,0,0.156986185701028,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0.0757786982182394,0,0,0.103432995861895,0,0,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0,0.358611026963382,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0.331397375727916,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0,0,0,0,0.393364276848904,0,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0.601633342410425,0.651032612147555,0,0,0.257575567634187,0,0,0,0.464858073811369,0.411167888021826,0.309706370895104,2.58923153089935,1.0246428261164,0.47296445977717,2.06847408441971,0.645484683583826,1.35426486594342,0.188242339542605,0.545812300115692,0,4.28517449319264,0.320929027076094,1.91801137739712,0.659702600373432,1.19678194572979,0.852449501065388,1.45104619314292,1.70215567407342,0.622822248995575,1.25624332628372,0,0.434377689410233,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764546456250458,1.32171328579026,0,0,0,0.786021525498329,1.02800749499755,0,0.32592226663359,0,0,0,0.589211814949674,0,0,0,0,0,0,0,0.296573126324121,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0,0.0945348171640679,0,0.175669571386252,0.0654895377488563,0,0,0.324547393654683,0,0,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0.354668382198357,0,0,0,0,0,0.163461903113459,0.151357427644931,0,0,0,0,0,0,0,0.140450806702248,0,0.122834317311768,0,0,0.494533858557114,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0.464367928031979,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86595303986695,2.45003920808834,2.01987893482208,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0,0,0.215627574859517,0.256686072559497,0.254094624222463,0,0,0.167516265334349,0,0.749007023947182,0,0.828831026872071,0.12269149171914,0,0,0,0,0,0,0,2.27407504055985,0,0,0,0.0868836144680828,0.391602314925481,0,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.0821271560138091,0,0.116210378459959,0,0,0.184161977871793,0.34444334449382,0.182091168006717,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0.096670718292122,0,0,0.137836572484531,0.107420244868274,0,0,0,0,0,0,0.10115778085555,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0.284136146806413,0,0,0,0,0,0,0.494411622680279,0,0,0,0,0.20453736500431,0,0,0,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0.0769502585037971,0,0.23056390438806,0,0,0.31900115973192,0.0915975934018623,0,0,0,0,0,0.19606253431774,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0.104421949505455,0.067401132980677,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0.105600336519406,0.537862017998534,0,0,0,0,0.542999601753713,0,0,0,0,0,0,0.146552233678082,0,0,0.13223260174269,0,0,0.533937062838473,0.157204305099666,0,0.496166021811951,0,0,0,0,0.2506898940227,0,0.327872630709804,0,0,0.122026264901963,0.1251909307065,0,0.110929051536852,0.0620964029413835,0,0.124980407962107,0,0.570930667089935,0.235265819698172,0,0,0,0,0,0.378806010550178,0,0,0,0.302461847526478,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0.176689145945881,0,0,0,0,0,0,0,0,0.163565394255844,0.327609848846413,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0.781078098613847,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0.342976018874837,0,0,0,0,0.156986185701028,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0.0757786982182394,0,0,0.103432995861895,0,0,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0,0.358611026963382,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p14@SOCS3 | |short_description=p14@SOCS3 | ||
}} | }} |
Latest revision as of 21:24, 17 September 2015
Short description: | p14@SOCS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_SOCS3_5end |
Coexpression cluster: | C3691_CD14_Mast_Neutrophils_melanoma_Osteoblast_Renal_CD4 |
Association with transcript: | 0bp_to_AB006967, AB464720, AF159854, AM392896, AM393146, AM393491, BT019544, CR536497, CR541694, CU687476_5end |
EntrezGene: | SOCS3 |
HGNC: | 19391 |
UniProt: | O14543Q5U0H7Q6FI39 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid lineage restricted progenitor cell | 1.88e-32 | 66 |
classical monocyte | 3.50e-32 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.50e-32 | 42 |
granulocyte monocyte progenitor cell | 5.98e-32 | 67 |
myeloid leukocyte | 1.20e-29 | 72 |
defensive cell | 5.35e-28 | 48 |
phagocyte | 5.35e-28 | 48 |
monopoietic cell | 3.93e-22 | 59 |
monocyte | 3.93e-22 | 59 |
monoblast | 3.93e-22 | 59 |
promonocyte | 3.93e-22 | 59 |
mast cell | 5.11e-22 | 5 |
basophil mast progenitor cell | 5.11e-22 | 5 |
macrophage dendritic cell progenitor | 2.25e-21 | 61 |
hematopoietic lineage restricted progenitor cell | 7.02e-20 | 120 |
myeloid cell | 2.78e-19 | 108 |
common myeloid progenitor | 2.78e-19 | 108 |
leukocyte | 2.44e-17 | 136 |
hematopoietic oligopotent progenitor cell | 2.29e-14 | 161 |
hematopoietic multipotent progenitor cell | 2.29e-14 | 161 |
hematopoietic stem cell | 1.08e-13 | 168 |
hematopoietic cell | 6.71e-13 | 177 |
nongranular leukocyte | 6.78e-13 | 115 |
endocrine cell | 1.63e-12 | 9 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.10e-28 | 76 |
bone element | 7.18e-26 | 82 |
skeletal element | 1.92e-23 | 90 |
immune system | 1.22e-22 | 93 |
hematopoietic system | 2.08e-21 | 98 |
blood island | 2.08e-21 | 98 |
skeletal system | 5.98e-21 | 100 |
hemolymphoid system | 2.78e-19 | 108 |
musculoskeletal system | 7.32e-12 | 167 |
lateral plate mesoderm | 1.99e-09 | 203 |