FFCP PHASE1:Hg19::chr19:3982849..3982958,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26812 | |EntrezGene=26812 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10166 | |HGNC=10166 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-279bp_to_NR_002602,uc002lzf.1_5end | |association_with_transcript=-279bp_to_NR_002602,uc002lzf.1_5end | ||
|cluster_id=chr19:3982849..3982958,- | |||
|coexpression_cluster_id=C2488 | |coexpression_cluster_id=C2488 | ||
|description=CAGE_peak_1_at_SNORD37_5end | |description=CAGE_peak_1_at_SNORD37_5end | ||
|id=chr19:3982849..3982958,- | |id=chr19:3982849..3982958,- | ||
|ontology_enrichment_celltype=CL:0000055!3.82e-08!180;CL:0000183!5.16e-08!59;CL:0000393!1.63e-07!60;CL:0000211!1.63e-07!60;CL:0002321!1.87e-07!248;CL:0000220!2.58e-07!246;CL:0000680!4.91e-07!57;CL:0000056!4.91e-07!57;CL:0000355!4.91e-07!57;CL:0000144!5.21e-07!625;CL:0000222!6.78e-07!119;CL:0000187!8.48e-07!54;CL:0002371!9.79e-07!591 | |ontology_enrichment_celltype=CL:0000055!3.82e-08!180;CL:0000183!5.16e-08!59;CL:0000393!1.63e-07!60;CL:0000211!1.63e-07!60;CL:0002321!1.87e-07!248;CL:0000220!2.58e-07!246;CL:0000680!4.91e-07!57;CL:0000056!4.91e-07!57;CL:0000355!4.91e-07!57;CL:0000144!5.21e-07!625;CL:0000222!6.78e-07!119;CL:0000187!8.48e-07!54;CL:0002371!9.79e-07!591 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,6.84e-08,61;CL:0000211,6.84e-08,61;CL:0002321,7.68e-08,250;CL:0000680,2.09e-07,58;CL:0000056,2.09e-07,58;CL:0000355,2.09e-07,58;CL:0000222,2.30e-07,121;CL:0000187,3.60e-07,55;CL:0000192,8.52e-07,43;CL:0000514,8.52e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!2.98e-10!70;UBERON:0000486!4.25e-09!82;UBERON:0000914!5.82e-09!83;UBERON:0002329!5.82e-09!83;UBERON:0003077!5.82e-09!83;UBERON:0003059!5.82e-09!83;UBERON:0007282!5.82e-09!83;UBERON:0009618!5.82e-09!83;UBERON:0007285!5.82e-09!83;UBERON:0001134!1.49e-08!61;UBERON:0002036!1.49e-08!61;UBERON:0003082!1.49e-08!61;UBERON:0002385!3.17e-08!63;UBERON:0001015!3.17e-08!63;UBERON:0000383!3.17e-08!63 | |ontology_enrichment_uberon=UBERON:0004290!2.98e-10!70;UBERON:0000486!4.25e-09!82;UBERON:0000914!5.82e-09!83;UBERON:0002329!5.82e-09!83;UBERON:0003077!5.82e-09!83;UBERON:0003059!5.82e-09!83;UBERON:0007282!5.82e-09!83;UBERON:0009618!5.82e-09!83;UBERON:0007285!5.82e-09!83;UBERON:0001134!1.49e-08!61;UBERON:0002036!1.49e-08!61;UBERON:0003082!1.49e-08!61;UBERON:0002385!3.17e-08!63;UBERON:0001015!3.17e-08!63;UBERON:0000383!3.17e-08!63 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.41e-12,78;UBERON:0007524,7.58e-11,73;UBERON:0002329,1.16e-10,71;UBERON:0003059,1.16e-10,71;UBERON:0007282,1.16e-10,71;UBERON:0004290,1.16e-10,71;UBERON:0009618,1.16e-10,71;UBERON:0003077,2.04e-10,72;UBERON:0007285,2.04e-10,72;UBERON:0000486,1.81e-09,83;UBERON:0001134,5.98e-09,62;UBERON:0002036,5.98e-09,62;UBERON:0003082,5.98e-09,62;UBERON:0002385,1.31e-08,64;UBERON:0001015,1.31e-08,64;UBERON:0000383,1.31e-08,64;UBERON:0005256,2.05e-07,122 | |||
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| ||
|short_description=p1@SNORD37 | |short_description=p1@SNORD37 | ||
}} | }} |
Latest revision as of 22:10, 17 September 2015
Short description: | p1@SNORD37 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SNORD37_5end |
Coexpression cluster: | C2488_skeletal_Bronchial_Mesenchymal_Adipocyte_iPS_Smooth_pancreas |
Association with transcript: | -279bp_to_NR_002602, uc002lzf.1_5end |
EntrezGene: | SNORD37 |
HGNC: | 10166 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 6.84e-08 | 61 |
electrically active cell | 6.84e-08 | 61 |
embryonic cell | 7.68e-08 | 250 |
muscle precursor cell | 2.09e-07 | 58 |
myoblast | 2.09e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.09e-07 | 58 |
mesodermal cell | 2.30e-07 | 121 |
muscle cell | 3.60e-07 | 55 |
smooth muscle cell | 8.52e-07 | 43 |
smooth muscle myoblast | 8.52e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 2.41e-12 | 78 |
dense mesenchyme tissue | 7.58e-11 | 73 |
somite | 1.16e-10 | 71 |
presomitic mesoderm | 1.16e-10 | 71 |
presumptive segmental plate | 1.16e-10 | 71 |
dermomyotome | 1.16e-10 | 71 |
trunk paraxial mesoderm | 1.16e-10 | 71 |
paraxial mesoderm | 2.04e-10 | 72 |
presumptive paraxial mesoderm | 2.04e-10 | 72 |
multilaminar epithelium | 1.81e-09 | 83 |
skeletal muscle tissue | 5.98e-09 | 62 |
striated muscle tissue | 5.98e-09 | 62 |
myotome | 5.98e-09 | 62 |
muscle tissue | 1.31e-08 | 64 |
musculature | 1.31e-08 | 64 |
musculature of body | 1.31e-08 | 64 |
trunk mesenchyme | 2.05e-07 | 122 |