FFCP PHASE1:Hg19::chr6:31560772..31560795,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=259197 | |EntrezGene=259197 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19077 | |HGNC=19077 | ||
|TSSclassifier=strong | |||
|UniProt=O14931,Q05D23 | |UniProt=O14931,Q05D23 | ||
|association_with_transcript=-10bp_to_ENST00000340027,ENST00000376072,ENST00000376073,NM_001145466,NM_001145467,NM_147130,uc003nuv.2,uc003nuw.2,uc003nux.1_5end | |association_with_transcript=-10bp_to_ENST00000340027,ENST00000376072,ENST00000376073,NM_001145466,NM_001145467,NM_147130,uc003nuv.2,uc003nuw.2,uc003nux.1_5end | ||
|cluster_id=chr6:31560772..31560795,- | |||
|coexpression_cluster_id=C2055 | |||
|description=CAGE_peak_2_at_NCR3_5end | |description=CAGE_peak_2_at_NCR3_5end | ||
|id=chr6:31560772..31560795,- | |id=chr6:31560772..31560795,- | ||
|ontology_enrichment_celltype=CL:0000838!1.00e-42!52;CL:0000542!1.50e-41!53;CL:0000051!1.50e-41!53;CL:0000037!3.39e-35!172;CL:0000566!3.39e-35!172;CL:0000988!3.40e-34!182;CL:0002032!1.92e-32!165;CL:0000837!1.92e-32!165;CL:0000738!9.23e-30!140;CL:0002087!4.38e-24!119;CL:0002031!2.25e-23!124;CL:0000945!1.66e-20!24;CL:0000826!1.66e-20!24;CL:0000791!2.40e-20!18;CL:0000789!2.40e-20!18;CL:0002420!2.40e-20!18;CL:0002419!2.40e-20!18;CL:0000790!2.40e-20!18;CL:0000084!1.85e-19!25;CL:0000827!1.85e-19!25;CL:0000236!4.43e-14!14;CL:0000625!1.69e-13!11;CL:0000134!9.58e-08!358;CL:0002320!1.93e-07!365;CL:0000624!3.03e-07!6 | |ontology_enrichment_celltype=CL:0000838!1.00e-42!52;CL:0000542!1.50e-41!53;CL:0000051!1.50e-41!53;CL:0000037!3.39e-35!172;CL:0000566!3.39e-35!172;CL:0000988!3.40e-34!182;CL:0002032!1.92e-32!165;CL:0000837!1.92e-32!165;CL:0000738!9.23e-30!140;CL:0002087!4.38e-24!119;CL:0002031!2.25e-23!124;CL:0000945!1.66e-20!24;CL:0000826!1.66e-20!24;CL:0000791!2.40e-20!18;CL:0000789!2.40e-20!18;CL:0002420!2.40e-20!18;CL:0002419!2.40e-20!18;CL:0000790!2.40e-20!18;CL:0000084!1.85e-19!25;CL:0000827!1.85e-19!25;CL:0000236!4.43e-14!14;CL:0000625!1.69e-13!11;CL:0000134!9.58e-08!358;CL:0002320!1.93e-07!365;CL:0000624!3.03e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000542;1.19e-34;53!CL:0000791;6.81e-34;18!CL:0000789;6.81e-34;18!CL:0002419;6.81e-34;18!CL:0000084;1.14e-28;25!CL:0000945;3.44e-27;24!CL:0000625;4.53e-22;11!CL:0000236;1.96e-19;13!CL:0000624;2.44e-11;6!CL:0002087;5.13e-09;104!CL:0000623;6.88e-08;3!CL:0000898;7.92e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.80e-61,52;CL:0000542,4.74e-60,53;CL:0000051,4.74e-60,53;CL:0000791,6.18e-34,18;CL:0000789,6.18e-34,18;CL:0002420,6.18e-34,18;CL:0002419,6.18e-34,18;CL:0000790,6.18e-34,18;CL:0000084,1.03e-28,25;CL:0000827,1.03e-28,25;CL:0002087,3.35e-28,115;CL:0000738,6.77e-28,136;CL:0000945,3.79e-27,24;CL:0000826,3.79e-27,24;CL:0000037,4.23e-27,168;CL:0002032,3.11e-25,161;CL:0000837,3.11e-25,161;CL:0000988,7.14e-25,177;CL:0002031,1.23e-23,120;CL:0000625,4.18e-22,11;CL:0000236,5.26e-21,14;CL:0000624,2.39e-11,6;CL:0000623,6.73e-08,3;CL:0000825,6.73e-08,3;CL:0000898,8.41e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000051;1.19e-34;53!CL:0000790;6.81e-34;18 | |||
|ontology_enrichment_disease=DOID:2531!1.60e-08!51;DOID:0060083!1.60e-08!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!4.92e-13!15;UBERON:0000179!4.92e-13!15;UBERON:0000463!4.92e-13!15;UBERON:0002384!3.35e-07!375;UBERON:0007023!9.98e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.85e-17;15!UBERON:0000179;7.85e-17;15!UBERON:0000463;7.85e-17;15!UBERON:0002390;2.53e-09;32!UBERON:0002193;8.51e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,8.16e-17,15;UBERON:0000179,8.16e-17,15;UBERON:0000463,8.16e-17,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.6214633989652,7.79955599774485,11.1769309465425,15.3412067971073,9.59573495243032,5.88301268601089,0,0,0,1.39440961044543,0.853015394924529,0,1.66198622559563,5.81578897663411,6.2933152507597,0.223915474239924,0.32389366601898,0.257575567634187,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0.622822248995575,0,0,0.217188844705117,0.605399502633369,0,0,0,0,0.209658645508376,0,0,0,0,0,0,36.9592113368778,25.6685147293202,27.5747868697702,23.8968924637244,20.0197993518006,27.5881171178152,29.7470192753188,21.9432363543134,28.4606484554724,25.8384363323213,29.4350385656426,1.32171328579026,3.36305137788922,0,2.75393678159366,7.8602152549833,6.5792479679843,54.001238011189,11.7332015988093,10.4158517261641,13.6378709885538,17.4914417309723,10.0166008541445,11.2982286237647,10.8321545506006,17.1642368432405,20.0291395242213,30.2565744470764,32.0566020631584,28.4007024020351,3.26230438956533,2.94294910898684,3.1360657141493,26.1744581631378,9.19729184644611,8.59068613706575,5.06039384039006,13.061181987288,13.6727525309848,14.2567806667256,10.9919836926774,15.7423531719935,19.9889162483753,20.5996209278295,19.7070719261051,15.7253259715291,40.1160293675261,11.1514790989755,0,0,0,0,0,0,0,0,0,0,0,0.654895377488563,0,0,0.324547393654683,0.348259474598534,0.132957960518865,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0.492663237895943,3.34584049250259,0.207328115540772,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,84.0638579951455,32.510075433318,45.2817907204986,30.8023287071396,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,9.9248652538986,7.54999702865159,10.1391179913272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.564862804660675,0,0,0,0,9.13405696617905,7.64637207142375,9.68400218196076,9.52927101831156,12.3408681925858,8.43015304550532,6.48037724685738,9.51750211553125,0,0,0,0,0,0.426851060090485,0.159426272728822,5.58822240011887,1.1490322207942,0.635020748171649,0,1.40398589056729,0,0.313359791546046,0,0.50787533340481,0,0,0,0.343505344755765,0,0.223676107892416,0,0,6.12493582569533,0,0.540911356951966,6.99451132795422,0,0,0.879049075631364,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,5.8019622261541,0,0,0.738508832766417,0,0,0,0,0.0986434056369336,21.5534783112246,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0.638002319463839,0,1.5991043280559,19.4167266571899,1.09886179476517,0.166211681900156,0.676786981851542,0.784250137270958,1.67821586975843,0.189753732724185,0,0,0,0,0,1.99052386215701,0.265372693510018,1.22206028986725,0,0.247127877893006,0.417687798021821,0.067401132980677,0,0,0.182454789215666,0,0,0,1.20990716048664,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,3.21758661849981,0.795229689809303,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,1.42939065274673,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0.439656701034247,0,0,0,0,0,1.38823636338003,0,2.89967338743037,6.45015828355536,0,6.0896299190448,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.18628920882415,0,0,0.151649117541648,0,0,0,0,0.149254802886874,0,1.10961172300523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0.584580926518165,0.531459361253452,0.163565394255844,0,0,0,7.9994958341972,0.106691729694141,0,0,0,0,0.622077260032973,0,0,0,0,0.169732529954025,0,0,0,0,0.0788617450012534,0,0.352675943690684,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,7.02927324090253,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,1.29068207646083,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,0.655678681511872,0,0,0,0,0,0,0,6.57887425858975,2.44939974299593,0,0,0,0,0,4.58729283404541,0,0,0.0679914901909147,0,2.1161073620616,0,0,0,0.126166424835079,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0.213233981900981,0,1.22718928688412,0.931120714437869,0,0.12729431655633,0,0.217716747896961,0,4.71464371102113,0.358611026963382,0,0,0,0,0,0,0.122241444182866,0,0,8.05095174364105,5.44966436915496 | |phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.6214633989652,7.79955599774485,11.1769309465425,15.3412067971073,9.59573495243032,5.88301268601089,0,0,0,1.39440961044543,0.853015394924529,0,1.66198622559563,5.81578897663411,6.2933152507597,0.223915474239924,0.32389366601898,0.257575567634187,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0.622822248995575,0,0,0.217188844705117,0.605399502633369,0,0,0,0,0.209658645508376,0,0,0,0,0,0,36.9592113368778,25.6685147293202,27.5747868697702,23.8968924637244,20.0197993518006,27.5881171178152,29.7470192753188,21.9432363543134,28.4606484554724,25.8384363323213,29.4350385656426,1.32171328579026,3.36305137788922,0,2.75393678159366,7.8602152549833,6.5792479679843,54.001238011189,11.7332015988093,10.4158517261641,13.6378709885538,17.4914417309723,10.0166008541445,11.2982286237647,10.8321545506006,17.1642368432405,20.0291395242213,30.2565744470764,32.0566020631584,28.4007024020351,3.26230438956533,2.94294910898684,3.1360657141493,26.1744581631378,9.19729184644611,8.59068613706575,5.06039384039006,13.061181987288,13.6727525309848,14.2567806667256,10.9919836926774,15.7423531719935,19.9889162483753,20.5996209278295,19.7070719261051,15.7253259715291,40.1160293675261,11.1514790989755,0,0,0,0,0,0,0,0,0,0,0,0.654895377488563,0,0,0.324547393654683,0.348259474598534,0.132957960518865,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0.492663237895943,3.34584049250259,0.207328115540772,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,84.0638579951455,32.510075433318,45.2817907204986,30.8023287071396,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,9.9248652538986,7.54999702865159,10.1391179913272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.564862804660675,0,0,0,0,9.13405696617905,7.64637207142375,9.68400218196076,9.52927101831156,12.3408681925858,8.43015304550532,6.48037724685738,9.51750211553125,0,0,0,0,0,0.426851060090485,0.159426272728822,5.58822240011887,1.1490322207942,0.635020748171649,0,1.40398589056729,0,0.313359791546046,0,0.50787533340481,0,0,0,0.343505344755765,0,0.223676107892416,0,0,6.12493582569533,0,0.540911356951966,6.99451132795422,0,0,0.879049075631364,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,5.8019622261541,0,0,0.738508832766417,0,0,0,0,0.0986434056369336,21.5534783112246,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0.638002319463839,0,1.5991043280559,19.4167266571899,1.09886179476517,0.166211681900156,0.676786981851542,0.784250137270958,1.67821586975843,0.189753732724185,0,0,0,0,0,1.99052386215701,0.265372693510018,1.22206028986725,0,0.247127877893006,0.417687798021821,0.067401132980677,0,0,0.182454789215666,0,0,0,1.20990716048664,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,3.21758661849981,0.795229689809303,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,1.42939065274673,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0.439656701034247,0,0,0,0,0,1.38823636338003,0,2.89967338743037,6.45015828355536,0,6.0896299190448,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.18628920882415,0,0,0.151649117541648,0,0,0,0,0.149254802886874,0,1.10961172300523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0.584580926518165,0.531459361253452,0.163565394255844,0,0,0,7.9994958341972,0.106691729694141,0,0,0,0,0.622077260032973,0,0,0,0,0.169732529954025,0,0,0,0,0.0788617450012534,0,0.352675943690684,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,7.02927324090253,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,1.29068207646083,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,0.655678681511872,0,0,0,0,0,0,0,6.57887425858975,2.44939974299593,0,0,0,0,0,4.58729283404541,0,0,0.0679914901909147,0,2.1161073620616,0,0,0,0.126166424835079,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0.213233981900981,0,1.22718928688412,0.931120714437869,0,0.12729431655633,0,0.217716747896961,0,4.71464371102113,0.358611026963382,0,0,0,0,0,0,0.122241444182866,0,0,8.05095174364105,5.44966436915496 | ||
|short_description=p2@NCR3 | |short_description=p2@NCR3 | ||
}} | }} |
Latest revision as of 22:11, 17 September 2015
Short description: | p2@NCR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NCR3_5end |
Coexpression cluster: | C2055_NK_CD4_Natural_CD8_CD19_blood_Whole |
Association with transcript: | -10bp_to_ENST00000340027, ENST00000376072, ENST00000376073, NM_001145466, NM_001145467, NM_147130, uc003nuv.2, uc003nuw.2, uc003nux.1_5end |
EntrezGene: | NCR3 |
HGNC: | 19077 |
UniProt: | O14931Q05D23 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.80e-61 | 52 |
lymphocyte | 4.74e-60 | 53 |
common lymphoid progenitor | 4.74e-60 | 53 |
mature alpha-beta T cell | 6.18e-34 | 18 |
alpha-beta T cell | 6.18e-34 | 18 |
immature T cell | 6.18e-34 | 18 |
mature T cell | 6.18e-34 | 18 |
immature alpha-beta T cell | 6.18e-34 | 18 |
T cell | 1.03e-28 | 25 |
pro-T cell | 1.03e-28 | 25 |
nongranular leukocyte | 3.35e-28 | 115 |
leukocyte | 6.77e-28 | 136 |
lymphocyte of B lineage | 3.79e-27 | 24 |
pro-B cell | 3.79e-27 | 24 |
hematopoietic stem cell | 4.23e-27 | 168 |
hematopoietic oligopotent progenitor cell | 3.11e-25 | 161 |
hematopoietic multipotent progenitor cell | 3.11e-25 | 161 |
hematopoietic cell | 7.14e-25 | 177 |
hematopoietic lineage restricted progenitor cell | 1.23e-23 | 120 |
CD8-positive, alpha-beta T cell | 4.18e-22 | 11 |
B cell | 5.26e-21 | 14 |
CD4-positive, alpha-beta T cell | 2.39e-11 | 6 |
natural killer cell | 6.73e-08 | 3 |
pro-NK cell | 6.73e-08 | 3 |
naive T cell | 8.41e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 8.16e-17 | 15 |
haemolymphatic fluid | 8.16e-17 | 15 |
organism substance | 8.16e-17 | 15 |