FFCP PHASE1:Hg19::chr1:40782923..40782936,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:40782923..40782936,-
|short_description=p4@COL9A2
|description=CAGE_peak_4_at_COL9A2_5end
|association_with_transcript=2bp_to_ENST00000372736,NM_001852_5en...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1298 | |EntrezGene=1298 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2218 | |HGNC=2218 | ||
|TSSclassifier=strong | |||
|UniProt=B1AKJ3,Q14055 | |UniProt=B1AKJ3,Q14055 | ||
|association_with_transcript=2bp_to_ENST00000372736,NM_001852_5end | |||
|cluster_id=chr1:40782923..40782936,- | |||
|coexpression_cluster_id=C3981 | |||
|description=CAGE_peak_4_at_COL9A2_5end | |||
|id=chr1:40782923..40782936,- | |||
|ontology_enrichment_celltype=CL:0000128!2.44e-07!7;CL:0000126!2.44e-07!7;CL:0000127!2.44e-07!7;CL:0002453!2.44e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002319;1.14e-13;25!CL:0000128;5.30e-13;7!CL:0000126;5.30e-13;7!CL:0000127;5.30e-13;7!CL:0000064;6.30e-12;3!CL:0000067;6.30e-12;3!CL:0005012;6.30e-12;3!CL:0002304;6.30e-12;3!CL:0002603;1.04e-11;3!CL:0002586;2.61e-11;3!CL:0000123;1.01e-08;2!CL:0000242;1.01e-08;2!CL:0000095;1.24e-08;17!CL:0000149;1.39e-08;4!CL:0002549;1.80e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.15e-13,25;CL:0000128,4.69e-13,7;CL:0000126,4.69e-13,7;CL:0000127,4.69e-13,7;CL:0002453,4.69e-13,7;CL:0000064,6.10e-12,3;CL:0000067,6.10e-12,3;CL:0005012,6.10e-12,3;CL:0002304,6.10e-12,3;CL:0002603,7.85e-12,3;CL:0002586,2.36e-11,3;CL:0000133,4.12e-11,59;CL:0000242,9.58e-09,2;CL:0000095,1.15e-08,17;CL:0000123,1.15e-08,17;CL:0000149,1.29e-08,4;CL:0000221,1.65e-08,72;CL:0002549,1.63e-07,2;CL:0000047,9.59e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003075!6.78e-37!86;UBERON:0007284!6.78e-37!86;UBERON:0002346!2.60e-34!90;UBERON:0005743!2.30e-32!86;UBERON:0003056!2.07e-29!61;UBERON:0000073!1.33e-28!94;UBERON:0001016!1.33e-28!94;UBERON:0001017!2.62e-28!82;UBERON:0002616!2.08e-27!59;UBERON:0001049!3.19e-27!57;UBERON:0005068!3.19e-27!57;UBERON:0006241!3.19e-27!57;UBERON:0007135!3.19e-27!57;UBERON:0004121!9.65e-25!169;UBERON:0000153!1.11e-24!129;UBERON:0007811!1.11e-24!129;UBERON:0000033!5.51e-24!123;UBERON:0000924!1.37e-23!173;UBERON:0006601!1.37e-23!173;UBERON:0000955!1.54e-23!69;UBERON:0006238!1.54e-23!69;UBERON:0002780!1.29e-20!41;UBERON:0001890!1.29e-20!41;UBERON:0006240!1.29e-20!41;UBERON:0007023!2.41e-20!115;UBERON:0003080!7.01e-20!42;UBERON:0001893!4.27e-19!34;UBERON:0002020!1.03e-18!34;UBERON:0003528!1.03e-18!34;UBERON:0002791!3.52e-18!33;UBERON:0001869!5.49e-17!32;UBERON:0000064!9.14e-13!219;UBERON:0000956!1.48e-12!25;UBERON:0000203!1.48e-12!25;UBERON:0000970!1.26e-11!20;UBERON:0000483!2.00e-11!309;UBERON:0007625!3.05e-11!11;UBERON:0000119!4.55e-11!312;UBERON:0002104!7.66e-11!21;UBERON:0000020!1.04e-10!23;UBERON:0000019!1.55e-10!19;UBERON:0000047!1.55e-10!19;UBERON:0004088!1.55e-10!19;UBERON:0003072!1.55e-10!19;UBERON:0003071!1.55e-10!19;UBERON:0004128!1.55e-10!19;UBERON:0000475!3.03e-10!365;UBERON:0001032!4.72e-10!24;UBERON:0004456!4.72e-10!24;UBERON:0002619!1.07e-09!22;UBERON:0001950!1.43e-09!20;UBERON:0001456!4.03e-09!21;UBERON:0000481!1.63e-08!347;UBERON:0003076!1.70e-08!15;UBERON:0003057!1.70e-08!15;UBERON:0002200!3.60e-08!11;UBERON:0006876!3.60e-08!11;UBERON:0000477!5.50e-08!286;UBERON:0002308!7.32e-08!9;UBERON:0000125!7.32e-08!9;UBERON:0002203!9.57e-08!6;UBERON:0001768!9.57e-08!6;UBERON:0000025!9.87e-08!194;UBERON:0004733!1.33e-07!12;UBERON:0002028!1.33e-07!12;UBERON:0007277!1.33e-07!12;UBERON:0001801!3.63e-07!14;UBERON:0004732!7.81e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;1.19e-24;11!UBERON:0000970;1.83e-19;20!UBERON:0002104;2.03e-18;21!UBERON:0000019;6.85e-17;19!UBERON:0000047;6.85e-17;19!UBERON:0004088;6.85e-17;19!UBERON:0010230;6.85e-17;19!UBERON:0000020;1.32e-16;23!UBERON:0001032;8.22e-16;24!UBERON:0004456;8.22e-16;24!UBERON:0001456;4.41e-15;21!UBERON:0000488;8.49e-15;4!UBERON:0010371;1.58e-13;31!UBERON:0001778;6.30e-12;3!UBERON:0001775;6.30e-12;3!UBERON:0000966;7.70e-12;5!UBERON:0005388;7.70e-12;5!UBERON:0001802;7.70e-12;5!UBERON:0001781;2.61e-11;3!UBERON:0001782;2.61e-11;3!UBERON:0000073;5.54e-11;53!UBERON:0002616;5.54e-11;53!UBERON:0006876;6.67e-11;11!UBERON:0004733;5.87e-10;12!UBERON:0002028;5.87e-10;12!UBERON:0002203;7.12e-10;6!UBERON:0001768;7.12e-10;6!UBERON:0002200;7.12e-10;6!UBERON:0004732;3.87e-09;13!UBERON:0001801;1.42e-08;14!UBERON:0005629;1.80e-07;2!UBERON:0005358;1.80e-07;2!UBERON:0001886;1.80e-07;2!UBERON:0004086;1.80e-07;2!UBERON:0005282;1.80e-07;2!UBERON:0005281;1.80e-07;2!UBERON:0002780;6.42e-07;41!UBERON:0001890;6.42e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,1.26e-24,11;UBERON:0003075,8.43e-24,82;UBERON:0007284,8.43e-24,82;UBERON:0010371,1.29e-22,104;UBERON:0002346,2.19e-22,86;UBERON:0003056,1.79e-19,61;UBERON:0000970,2.13e-18,21;UBERON:0002104,2.13e-18,21;UBERON:0004121,2.84e-18,171;UBERON:0000924,2.84e-18,171;UBERON:0006601,2.84e-18,171;UBERON:0001017,1.88e-17,81;UBERON:0000019,6.39e-16,20;UBERON:0000047,6.39e-16,20;UBERON:0010312,6.39e-16,20;UBERON:0004088,6.39e-16,20;UBERON:0010230,6.39e-16,20;UBERON:0003072,6.39e-16,20;UBERON:0004128,6.39e-16,20;UBERON:0003071,6.39e-16,20;UBERON:0000020,8.58e-16,24;UBERON:0001032,8.58e-16,24;UBERON:0004456,8.58e-16,24;UBERON:0001016,3.65e-15,89;UBERON:0000488,1.11e-14,4;UBERON:0000955,1.58e-14,68;UBERON:0006238,1.58e-14,68;UBERON:0000073,2.36e-14,53;UBERON:0002616,2.36e-14,53;UBERON:0001456,2.77e-14,22;UBERON:0010314,1.51e-13,132;UBERON:0001049,2.21e-13,56;UBERON:0005068,2.21e-13,56;UBERON:0006241,2.21e-13,56;UBERON:0007135,2.21e-13,56;UBERON:0001778,6.10e-12,3;UBERON:0001775,6.10e-12,3;UBERON:0005085,1.04e-11,31;UBERON:0001782,2.36e-11,3;UBERON:0005424,2.36e-11,3;UBERON:0006876,7.25e-11,11;UBERON:0004733,4.42e-10,12;UBERON:0002028,4.42e-10,12;UBERON:0007277,4.42e-10,12;UBERON:0000966,6.90e-10,6;UBERON:0005388,6.90e-10,6;UBERON:0001802,6.90e-10,6;UBERON:0002203,8.48e-10,6;UBERON:0001768,8.48e-10,6;UBERON:0002200,8.48e-10,6;UBERON:0004732,2.98e-09,13;UBERON:0001781,1.29e-08,4;UBERON:0001801,1.51e-08,14;UBERON:0003076,6.34e-08,15;UBERON:0003057,6.34e-08,15;UBERON:0002780,1.28e-07,41;UBERON:0001890,1.28e-07,41;UBERON:0003080,1.28e-07,41;UBERON:0006240,1.28e-07,41;UBERON:0005629,1.63e-07,2;UBERON:0005358,1.63e-07,2;UBERON:0001886,1.63e-07,2;UBERON:0004086,1.63e-07,2;UBERON:0005282,1.63e-07,2;UBERON:0005281,1.63e-07,2 | |||
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| ||
|short_description=p4@COL9A2 | |||
}} | }} |
Latest revision as of 01:09, 18 September 2015
Short description: | p4@COL9A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_COL9A2_5end |
Coexpression cluster: | C3981_Astrocyte_trachea_Chondrocyte_Ciliary_retina_Retinal_merkel |
Association with transcript: | 2bp_to_ENST00000372736, NM_001852_5end |
EntrezGene: | COL9A2 |
HGNC: | 2218 |
UniProt: | B1AKJ3Q14055 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.15e-13 | 25 |
oligodendrocyte | 4.69e-13 | 7 |
macroglial cell | 4.69e-13 | 7 |
astrocyte | 4.69e-13 | 7 |
oligodendrocyte precursor cell | 4.69e-13 | 7 |
ciliated cell | 6.10e-12 | 3 |
ciliated epithelial cell | 6.10e-12 | 3 |
multi-ciliated epithelial cell | 6.10e-12 | 3 |
non-pigmented ciliary epithelial cell | 6.10e-12 | 3 |
astrocyte of the cerebellum | 7.85e-12 | 3 |
retinal pigment epithelial cell | 2.36e-11 | 3 |
neurectodermal cell | 4.12e-11 | 59 |
Merkel cell | 9.58e-09 | 2 |
neuron associated cell | 1.15e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 1.15e-08 | 17 |
visual pigment cell | 1.29e-08 | 4 |
ectodermal cell | 1.65e-08 | 72 |
fibroblast of choroid plexus | 1.63e-07 | 2 |
neuronal stem cell | 9.59e-07 | 8 |