FFCP PHASE1:Hg19::chr6:32610723..32610733,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3117 | |EntrezGene=3117 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=4942 | |HGNC=4942 | ||
|TSSclassifier=strong | |||
|UniProt=Q8MH45,Q8MH44,Q8MH43,Q8MH39,Q8MH03,Q8MH02,Q8MH01 | |UniProt=Q8MH45,Q8MH44,Q8MH43,Q8MH39,Q8MH03,Q8MH02,Q8MH01 | ||
|association_with_transcript=226bp_to_AF533895,AF533896,AF533897,AF533901,AF533937,AF533938,AF533939_5end | |association_with_transcript=226bp_to_AF533895,AF533896,AF533897,AF533901,AF533937,AF533938,AF533939_5end | ||
|cluster_id=chr6:32610723..32610733,+ | |||
|coexpression_cluster_id=C187 | |coexpression_cluster_id=C187 | ||
|description=CAGE_peak_11_at_HLA-DQA1_5end | |description=CAGE_peak_11_at_HLA-DQA1_5end | ||
|id=chr6:32610723..32610733,+ | |id=chr6:32610723..32610733,+ | ||
|ontology_enrichment_celltype=CL:0000990;1.58e-43;8!CL:0000451;2.06e-35;10!CL:0000453;7.42e-32;5!CL:0000840;5.20e-26;5!CL:0000945;1.97e-23;24!CL:0000236;2.94e-16;13!CL:0001014;5.15e-14;2!CL:0001016;5.15e-14;2!CL:0000235;5.60e-10;6!CL:0000542;3.20e-09;53!CL:0000738;7.59e-09;136!CL:0000473;3.90e-08;39!CL:0000234;3.90e-08;39!CL:0000946;2.49e-07;1!CL:0000786;2.49e-07;1 | |ontology_enrichment_celltype=CL:0000738!2.76e-44!140;CL:0002087!6.15e-44!119;CL:0002031!3.78e-42!124;CL:0000037!2.77e-34!172;CL:0000566!2.77e-34!172;CL:0000988!4.01e-34!182;CL:0002032!1.12e-33!165;CL:0000837!1.12e-33!165;CL:0002009!4.60e-30!65;CL:0002194!7.53e-27!63;CL:0000576!7.53e-27!63;CL:0000040!7.53e-27!63;CL:0000559!7.53e-27!63;CL:0000557!1.05e-26!71;CL:0000945!9.05e-24!24;CL:0000826!9.05e-24!24;CL:0000839!2.89e-23!70;CL:0000990!2.06e-21!8;CL:0000766!1.01e-20!76;CL:0000763!2.62e-18!112;CL:0000049!2.62e-18!112;CL:0002057!2.66e-17!42;CL:0000451!4.09e-17!10;CL:0000860!9.31e-16!45;CL:0000236!3.49e-15!14;CL:0000838!4.10e-15!52;CL:0000542!1.03e-14!53;CL:0000051!1.03e-14!53;CL:0000840!1.23e-14!5;CL:0001029!1.23e-14!5;CL:0000453!4.65e-13!5;CL:0000134!3.44e-08!358;CL:0002320!9.32e-08!365 | ||
| | |ontology_enrichment_celltype_v019=CL:0000990;1.58e-43;8!CL:0000451;2.06e-35;10!CL:0000453;7.42e-32;5!CL:0000840;5.20e-26;5!CL:0000945;1.97e-23;24!CL:0000236;2.94e-16;13!CL:0001014;5.15e-14;2!CL:0001016;5.15e-14;2!CL:0000235;5.60e-10;6!CL:0000542;3.20e-09;53!CL:0000738;7.59e-09;136!CL:0000473;3.90e-08;39!CL:0000234;3.90e-08;39!CL:0000946;2.49e-07;1!CL:0000786;2.49e-07;1 | ||
|ontology_enrichment_disease=DOID:630;1.07e-07;1!DOID:0050177;1.07e-07;1!DOID:0050427;1.07e-07;1!DOID:0060060;2.49e-07;1!DOID:0060061;2.49e-07;1!DOID:8691;2.49e-07;1 | |ontology_enrichment_celltype_v019_2=CL:0000990,9.24e-44,8;CL:0000451,1.33e-35,10;CL:0000738,9.74e-35,136;CL:0000453,3.76e-32,5;CL:0002031,2.03e-31,120;CL:0002032,1.53e-28,161;CL:0000837,1.53e-28,161;CL:0002087,1.35e-27,115;CL:0000037,3.92e-27,168;CL:0000840,5.53e-26,5;CL:0001029,5.53e-26,5;CL:0000988,1.74e-25,177;CL:0000945,1.75e-23,24;CL:0000826,1.75e-23,24;CL:0002009,9.35e-22,61;CL:0000236,1.86e-20,14;CL:0000557,1.52e-19,67;CL:0002194,7.76e-17,59;CL:0000576,7.76e-17,59;CL:0000040,7.76e-17,59;CL:0000559,7.76e-17,59;CL:0000763,2.58e-16,108;CL:0000049,2.58e-16,108;CL:0000839,8.73e-15,66;CL:0001014,5.17e-14,2;CL:0001016,5.17e-14,2;CL:0000766,2.43e-13,72;CL:0000473,4.13e-13,48;CL:0000234,4.13e-13,48;CL:0000838,4.47e-12,52;CL:0000542,8.23e-12,53;CL:0000051,8.23e-12,53;CL:0000134,5.54e-10,354;CL:0000235,5.71e-10,6;CL:0002320,1.12e-09,361;CL:0000219,1.32e-08,386;CL:0000860,6.70e-08,42;CL:0002057,6.70e-08,42;CL:0000946,2.66e-07,1;CL:0000786,2.66e-07,1;CL:0000980,2.66e-07,1;CL:0000048,2.71e-07,427;CL:0000723,4.11e-07,433;CL:0000034,7.06e-07,441 | ||
|ontology_enrichment_uberon=UBERON:0002171;1.07e-07;1!UBERON:0006518;1.07e-07;1!UBERON:0008949;1.07e-07;1!UBERON:0000101;1.07e-07;1!UBERON:0002167;1.07e-07;1 | |ontology_enrichment_development_v019=UBERON:0006965;5.51e-13;2!CL:0000051;3.20e-09;53 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:630;1.07e-07;1!DOID:0050177;1.07e-07;1!DOID:0050427;1.07e-07;1!DOID:0060060;2.49e-07;1!DOID:0060061;2.49e-07;1!DOID:8691;2.49e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,1.03e-07,1;DOID:0050177,1.03e-07,1;DOID:0050427,1.03e-07,1;DOID:0060060,1.61e-07,1;DOID:0060061,1.61e-07,1;DOID:8691,1.61e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!4.20e-29!102;UBERON:0003061!4.20e-29!102;UBERON:0002193!2.38e-28!112;UBERON:0002371!1.29e-22!80;UBERON:0002405!1.21e-20!115;UBERON:0001474!2.25e-20!86;UBERON:0004765!5.91e-16!101;UBERON:0001434!5.91e-16!101;UBERON:0003081!8.39e-12!216;UBERON:0002384!3.58e-07!375;UBERON:0004177!4.78e-07!7;UBERON:0002204!7.56e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0002171;1.07e-07;1!UBERON:0006518;1.07e-07;1!UBERON:0008949;1.07e-07;1!UBERON:0000101;1.07e-07;1!UBERON:0002167;1.07e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.11e-17,76;UBERON:0001474,2.04e-15,82;UBERON:0004765,8.97e-14,90;UBERON:0002405,3.14e-13,93;UBERON:0002390,2.14e-12,98;UBERON:0003061,2.14e-12,98;UBERON:0001434,4.36e-12,100;UBERON:0002193,5.82e-11,108;UBERON:0002384,2.90e-09,371;UBERON:0002171,9.71e-08,1;UBERON:0006518,9.71e-08,1;UBERON:0008949,9.71e-08,1;UBERON:0000101,9.71e-08,1;UBERON:0002167,9.71e-08,1 | |||
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| ||
|short_description=p11@HLA-DQA1 | |short_description=p11@HLA-DQA1 | ||
}} | }} |
Latest revision as of 03:36, 18 September 2015
Short description: | p11@HLA-DQA1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_HLA-DQA1_5end |
Coexpression cluster: | C187_migratory_immature_Dendritic_CD19_CD14_Monocytederived_Macrophage |
Association with transcript: | 226bp_to_AF533895, AF533896, AF533897, AF533901, AF533937, AF533938, AF533939_5end |
EntrezGene: | HLA-DQA1 |
HGNC: | 4942 |
UniProt: | Q8MH45Q8MH44Q8MH43Q8MH39Q8MH03Q8MH02Q8MH01 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.11e-17 | 76 |
bone element | 2.04e-15 | 82 |
skeletal element | 8.97e-14 | 90 |
immune system | 3.14e-13 | 93 |
hematopoietic system | 2.14e-12 | 98 |
blood island | 2.14e-12 | 98 |
skeletal system | 4.36e-12 | 100 |
hemolymphoid system | 5.82e-11 | 108 |
connective tissue | 2.90e-09 | 371 |
lower lobe of right lung | 9.71e-08 | 1 |
right lung lobe | 9.71e-08 | 1 |
lower lobe of lung | 9.71e-08 | 1 |
lobe of lung | 9.71e-08 | 1 |
right lung | 9.71e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 1.03e-07 | 1 |
monogenic disease | 1.03e-07 | 1 |
xeroderma pigmentosum | 1.03e-07 | 1 |
non-Hodgkin lymphoma | 1.61e-07 | 1 |
cutaneous T cell lymphoma | 1.61e-07 | 1 |
mycosis fungoides | 1.61e-07 | 1 |