FFCP PHASE1:Hg19::chr19:42364267..42364301,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:42364267..42364301,+
|short_description=p2@RPS19
|description=CAGE_peak_2_at_RPS19_5end
|association_with_transcript=279bp_to_ENST00000221975,NM_001022,uc...") |
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(13 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6223 | |EntrezGene=6223 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10402 | |HGNC=10402 | ||
|TSSclassifier=strong | |||
|UniProt=P39019,B0ZBD0 | |UniProt=P39019,B0ZBD0 | ||
|association_with_transcript=279bp_to_ENST00000221975,NM_001022,uc002ort.2_5end | |||
|cluster_id=chr19:42364267..42364301,+ | |||
|coexpression_cluster_id=C447 | |||
|description=CAGE_peak_2_at_RPS19_5end | |||
|id=chr19:42364267..42364301,+ | |||
|ontology_enrichment_celltype=CL:0000012!5.73e-42!682;CL:0000548!1.50e-41!679;CL:0000004!1.50e-41!679;CL:0000255!1.50e-41!679;CL:0000144!1.02e-35!625;CL:0000003!6.57e-34!722;CL:0002371!7.36e-31!591;CL:0000222!2.62e-30!119;CL:0000220!3.22e-26!246;CL:0002321!7.87e-26!248;CL:0000055!1.14e-23!180;CL:0000183!2.78e-22!59;CL:0000680!1.17e-21!57;CL:0000056!1.17e-21!57;CL:0000355!1.17e-21!57;CL:0000187!2.81e-21!54;CL:0000393!6.46e-21!60;CL:0000211!6.46e-21!60;CL:0000192!8.40e-19!42;CL:0000514!8.40e-19!42;CL:0000359!2.30e-15!32;CL:0000063!1.57e-11!578;CL:0000066!8.78e-11!254;CL:0000213!6.06e-09!57;CL:0000215!6.06e-09!57;CL:0002078!1.23e-08!44;CL:0000048!1.72e-08!430;CL:0000723!1.77e-08!436;CL:0000034!2.99e-08!444;CL:0000115!5.40e-07!35;CL:1000449!9.32e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.22e-14;32!CL:0000192;2.14e-13;43!CL:0000187;2.32e-12;55!CL:0000393;2.34e-10;61!CL:0000211;2.34e-10;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,6.02e-31,121;CL:0002321,1.93e-26,250;CL:0000680,1.04e-21,58;CL:0000056,1.04e-21,58;CL:0000355,1.04e-21,58;CL:0000187,2.54e-21,55;CL:0000393,5.59e-21,61;CL:0000211,5.59e-21,61;CL:0000192,8.10e-19,43;CL:0000514,8.10e-19,43;CL:0000359,2.30e-15,32;CL:0000066,1.15e-10,253;CL:0000213,2.43e-09,58;CL:0000215,2.43e-09,58;CL:0002078,4.69e-09,45;CL:0000048,2.93e-08,427;CL:0000723,3.03e-08,433;CL:0000034,5.09e-08,441;CL:0000115,2.09e-07,36 | |||
|ontology_enrichment_development_v019=CL:0000514;2.14e-13;43!CL:0000355;9.49e-12;58!CL:0000222;2.07e-08;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!8.66e-22!70;UBERON:0000914!1.07e-21!83;UBERON:0002329!1.07e-21!83;UBERON:0003077!1.07e-21!83;UBERON:0003059!1.07e-21!83;UBERON:0007282!1.07e-21!83;UBERON:0009618!1.07e-21!83;UBERON:0007285!1.07e-21!83;UBERON:0000486!8.45e-21!82;UBERON:0002049!3.16e-18!79;UBERON:0007798!3.16e-18!79;UBERON:0001134!4.57e-18!61;UBERON:0002036!4.57e-18!61;UBERON:0003082!4.57e-18!61;UBERON:0005256!9.35e-18!143;UBERON:0000055!1.04e-17!69;UBERON:0001981!6.10e-17!60;UBERON:0007500!6.10e-17!60;UBERON:0004537!6.10e-17!60;UBERON:0006965!6.10e-17!60;UBERON:0001637!3.35e-16!42;UBERON:0003509!3.35e-16!42;UBERON:0004572!3.35e-16!42;UBERON:0002385!3.58e-16!63;UBERON:0001015!3.58e-16!63;UBERON:0000383!3.58e-16!63;UBERON:0003914!4.57e-16!118;UBERON:0004872!6.34e-16!84;UBERON:0000490!2.69e-15!138;UBERON:0002100!4.35e-15!216;UBERON:0003104!2.28e-14!238;UBERON:0009142!2.28e-14!238;UBERON:0004535!4.01e-13!110;UBERON:0004573!2.66e-12!33;UBERON:0004571!2.66e-12!33;UBERON:0001009!6.09e-12!113;UBERON:0006914!7.15e-07!25;UBERON:0000487!9.32e-07!22;UBERON:0004211!9.32e-07!16;UBERON:0001285!9.32e-07!16;UBERON:0007684!9.32e-07!16;UBERON:0003220!9.32e-07!16;UBERON:0004208!9.32e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;2.37e-11;42!UBERON:0003509;2.37e-11;42!UBERON:0004572;2.37e-11;42!UBERON:0004573;3.81e-11;33!UBERON:0004571;3.81e-11;33!UBERON:0007500;8.69e-11;56!UBERON:0001981;8.69e-11;56!UBERON:0004537;8.69e-11;56!UBERON:0003914;1.17e-10;74!UBERON:0000055;6.99e-09;65!UBERON:0002049;4.24e-08;75!UBERON:0007798;4.24e-08;75!UBERON:0000025;2.36e-07;93!UBERON:0000490;6.15e-07;33!UBERON:0006914;7.35e-07;25!UBERON:0000353;9.52e-07;15!UBERON:0000487;9.61e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,4.10e-25,78;UBERON:0002329,7.21e-22,71;UBERON:0003059,7.21e-22,71;UBERON:0007282,7.21e-22,71;UBERON:0004290,7.21e-22,71;UBERON:0009618,7.21e-22,71;UBERON:0003077,5.60e-21,72;UBERON:0007285,5.60e-21,72;UBERON:0000486,6.70e-21,83;UBERON:0007524,1.13e-20,73;UBERON:0000490,1.44e-18,148;UBERON:0002049,2.34e-18,78;UBERON:0007798,2.34e-18,78;UBERON:0001134,3.80e-18,62;UBERON:0002036,3.80e-18,62;UBERON:0003082,3.80e-18,62;UBERON:0000055,7.37e-18,68;UBERON:0007500,4.11e-17,59;UBERON:0001981,4.11e-17,59;UBERON:0004537,4.11e-17,59;UBERON:0006965,4.11e-17,59;UBERON:0002385,2.89e-16,64;UBERON:0001015,2.89e-16,64;UBERON:0000383,2.89e-16,64;UBERON:0001637,3.35e-16,42;UBERON:0003509,3.35e-16,42;UBERON:0004572,3.35e-16,42;UBERON:0004872,5.09e-16,83;UBERON:0003914,6.13e-16,117;UBERON:0002100,5.14e-15,199;UBERON:0005256,9.19e-15,122;UBERON:0003104,1.40e-14,160;UBERON:0009142,1.40e-14,160;UBERON:0004535,3.62e-13,109;UBERON:0004573,2.66e-12,33;UBERON:0004571,2.66e-12,33;UBERON:0001009,5.62e-12,112;UBERON:0006914,7.15e-07,25;UBERON:0000487,9.32e-07,22;UBERON:0000353,9.45e-07,15 | |||
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| ||
|short_description=p2@RPS19 | |||
}} | }} |
Latest revision as of 06:48, 18 September 2015
Short description: | p2@RPS19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RPS19_5end |
Coexpression cluster: | C447_Alveolar_Bronchial_Smooth_Renal_Tracheal_Keratocytes_Hepatic |
Association with transcript: | 279bp_to_ENST00000221975, NM_001022, uc002ort.2_5end |
EntrezGene: | RPS19 |
HGNC: | 10402 |
UniProt: | P39019B0ZBD0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 6.02e-31 | 121 |
embryonic cell | 1.93e-26 | 250 |
muscle precursor cell | 1.04e-21 | 58 |
myoblast | 1.04e-21 | 58 |
multi-potent skeletal muscle stem cell | 1.04e-21 | 58 |
muscle cell | 2.54e-21 | 55 |
electrically responsive cell | 5.59e-21 | 61 |
electrically active cell | 5.59e-21 | 61 |
smooth muscle cell | 8.10e-19 | 43 |
smooth muscle myoblast | 8.10e-19 | 43 |
vascular associated smooth muscle cell | 2.30e-15 | 32 |
epithelial cell | 1.15e-10 | 253 |
lining cell | 2.43e-09 | 58 |
barrier cell | 2.43e-09 | 58 |
meso-epithelial cell | 4.69e-09 | 45 |
multi fate stem cell | 2.93e-08 | 427 |
somatic stem cell | 3.03e-08 | 433 |
stem cell | 5.09e-08 | 441 |
endothelial cell | 2.09e-07 | 36 |