FFCP PHASE1:Hg19::chr2:175629150..175629163,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1134 | |EntrezGene=1134 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1955 | |HGNC=1955 | ||
|TSSclassifier=strong | |||
|UniProt=E7ENE5,B8ZZD3,F8WDS3 | |UniProt=E7ENE5,B8ZZD3,F8WDS3 | ||
|association_with_transcript=-10bp_to_ENST00000409219,ENST00000409542,ENST00000435083_5end | |association_with_transcript=-10bp_to_ENST00000409219,ENST00000409542,ENST00000435083_5end | ||
|cluster_id=chr2:175629150..175629163,- | |||
|coexpression_cluster_id=C913 | |||
|description=CAGE_peak_2_at_CHRNA1_5end | |description=CAGE_peak_2_at_CHRNA1_5end | ||
|id=chr2:175629150..175629163,- | |id=chr2:175629150..175629163,- | ||
|ontology_enrichment_celltype=CL:0000188!1.22e-16!9;CL:0000515!1.35e-08!4;CL:0002139!8.54e-08!24;CL:0000222!1.06e-07!119;CL:0000680!2.29e-07!57;CL:0000056!2.29e-07!57;CL:0000355!2.29e-07!57 | |ontology_enrichment_celltype=CL:0000188!1.22e-16!9;CL:0000515!1.35e-08!4;CL:0002139!8.54e-08!24;CL:0000222!1.06e-07!119;CL:0000680!2.29e-07!57;CL:0000056!2.29e-07!57;CL:0000355!2.29e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0000188;1.81e-29;9!CL:0000680;1.02e-21;7!CL:0000056;9.46e-18;4!CL:0000515;4.40e-14;3!CL:0002138;7.68e-11;6!CL:0000123;2.28e-09;2!CL:0000242;2.28e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,1.62e-29,9;CL:0000515,7.66e-18,4;CL:0005020,5.98e-11,6;CL:0002138,5.98e-11,6;CL:0005022,5.98e-11,6;CL:0000242,2.14e-09,2;CL:0000680,3.36e-08,58;CL:0000056,3.36e-08,58;CL:0000355,3.36e-08,58;CL:0000222,3.57e-08,121 | |||
|ontology_enrichment_development_v019=CL:0000515;9.46e-18;4!CL:0005022;7.68e-11;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000490!4.85e-14!138;UBERON:0001134!1.18e-10!61;UBERON:0002036!1.18e-10!61;UBERON:0003082!1.18e-10!61;UBERON:0002385!4.21e-10!63;UBERON:0001015!4.21e-10!63;UBERON:0000383!4.21e-10!63;UBERON:0000914!4.82e-09!83;UBERON:0002329!4.82e-09!83;UBERON:0003077!4.82e-09!83;UBERON:0003059!4.82e-09!83;UBERON:0007282!4.82e-09!83;UBERON:0009618!4.82e-09!83;UBERON:0007285!4.82e-09!83;UBERON:0004290!1.96e-08!70;UBERON:0000475!1.10e-07!365;UBERON:0000483!1.10e-07!309;UBERON:0000119!1.85e-07!312;UBERON:0000481!4.71e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;2.46e-57;16!UBERON:0002036;2.46e-57;16!UBERON:0002385;2.60e-27;31!UBERON:0001015;2.60e-27;31!UBERON:0000383;2.60e-27;31!UBERON:0000341;4.34e-09;2!UBERON:0005090;5.02e-09;2!UBERON:0001630;5.02e-09;2!UBERON:0001473;3.75e-08;8!UBERON:0004536;3.75e-08;8!UBERON:0006558;3.75e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,5.01e-14,62;UBERON:0002036,5.01e-14,62;UBERON:0003082,5.01e-14,62;UBERON:0002385,1.80e-13,64;UBERON:0001015,1.80e-13,64;UBERON:0000383,1.80e-13,64;UBERON:0002329,8.92e-12,71;UBERON:0003059,8.92e-12,71;UBERON:0007282,8.92e-12,71;UBERON:0004290,8.92e-12,71;UBERON:0009618,8.92e-12,71;UBERON:0003077,1.46e-11,72;UBERON:0007285,1.46e-11,72;UBERON:0007524,2.37e-11,73;UBERON:0007503,2.17e-10,78;UBERON:0000486,1.51e-09,83;UBERON:0005090,4.35e-09,2;UBERON:0001630,4.35e-09,2;UBERON:0000341,5.12e-09,2;UBERON:0000490,1.31e-08,148;UBERON:0001473,3.11e-08,8;UBERON:0004536,3.11e-08,8;UBERON:0006558,3.11e-08,8;UBERON:0005256,3.48e-07,122 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.612002073732759,0.313454721478088,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0.694281003215189,0,0.419499436209906,0,0.208994966536811,0,0,1.67360306382335,3.62546385398232,0,4.63717909341522,0.367663080345869,0.81014194788176,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,2.37600571456411,0.741800787835671,0,0,0,0.625592599359821,0.277064115484183,0.438977620880838,0,0.150238058906597,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.81692416624121,0,2.94017422771084,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,3.60916119402685,2.77791307545966,1.90254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.85273810081437,24.4680408268209,8.6300055471161,45.4814846629335,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0.271265023699736,0,0,0,0,0,2.27407504055985,0,0,0,0,0,20.2454620048405,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0.519254429183621,0,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,62.2559425801266,3.23502095940753,4.75861391651002,8.1323577765873,0.644521469209642,2.32026710262766,8.94879587869059,104.434577813623,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,5.06207079549961,0.571890581771475,0.255897791311334,0,0,0,0.539617372749944,0.54907405947211,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865615277858669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.78365540616599,0,0,0,0,0,0,0,0,1.00177834520615,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,2.41320361269025,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21031058919516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0,0,0,0.581934098930517,56.3956649558687,2.25980740780532,0,0,0.0633107959558787,0,0.240476460754601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0.0607495566580247,0,0,0.209818352539992,0.105600336519406,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0.0620964029413835,0,0,0,0,0,5.62001886968258,2.60857851499485,0,0,0,0.568209015825267,0,7.11848977277229,0,0,0,0,0.63718706865481,0.899606224327209,2.48420731002015,0,0,1.04349012362347,0,0.380805212168795,0,0,1.8259794697223,0,0.796191777397232,100.806996695115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0.0642292250964595,1.41696576325585,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0.606965604236632,0.682986574053893,0,0,0.514464028312255,0,0.197318320688547,0,0.111231401892069,0.078493092850514,0,0,0,0,0,0,0,0,12.5177956057857,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,1.94228651156368,28.7455859197492,23.196288626764,0.485710993059139,0,1.19370465096821,0,0,1.20934568419972,4.52888530700021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,2.77204176471275,2.14257988317366,0.193766729508018,0.0620747142958579,0,0,0.202117188958219,1.08858373948481,4.10679961302337,0.26940821205835,0.717222053926764,0.665320713092027,0,0,0,0,0,0,0,0,0,0 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| ||
|short_description=p2@CHRNA1 | |short_description=p2@CHRNA1 | ||
}} | }} |
Latest revision as of 07:42, 18 September 2015
Short description: | p2@CHRNA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CHRNA1_5end |
Coexpression cluster: | C913_mesenchymal_Skeletal_Myoblast_extraskeletal_skeletal_rhabdomyosarcoma_small |
Association with transcript: | -10bp_to_ENST00000409219, ENST00000409542, ENST00000435083_5end |
EntrezGene: | CHRNA1 |
HGNC: | 1955 |
UniProt: | E7ENE5B8ZZD3F8WDS3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 1.62e-29 | 9 |
skeletal muscle myoblast | 7.66e-18 | 4 |
lymphangioblast | 5.98e-11 | 6 |
endothelial cell of lymphatic vessel | 5.98e-11 | 6 |
vascular lymphangioblast | 5.98e-11 | 6 |
Merkel cell | 2.14e-09 | 2 |
muscle precursor cell | 3.36e-08 | 58 |
myoblast | 3.36e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.36e-08 | 58 |
mesodermal cell | 3.57e-08 | 121 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 5.01e-14 | 62 |
striated muscle tissue | 5.01e-14 | 62 |
myotome | 5.01e-14 | 62 |
muscle tissue | 1.80e-13 | 64 |
musculature | 1.80e-13 | 64 |
musculature of body | 1.80e-13 | 64 |
somite | 8.92e-12 | 71 |
presomitic mesoderm | 8.92e-12 | 71 |
presumptive segmental plate | 8.92e-12 | 71 |
dermomyotome | 8.92e-12 | 71 |
trunk paraxial mesoderm | 8.92e-12 | 71 |
paraxial mesoderm | 1.46e-11 | 72 |
presumptive paraxial mesoderm | 1.46e-11 | 72 |
dense mesenchyme tissue | 2.37e-11 | 73 |
epithelial vesicle | 2.17e-10 | 78 |
multilaminar epithelium | 1.51e-09 | 83 |
muscle structure | 4.35e-09 | 2 |
muscle organ | 4.35e-09 | 2 |
throat | 5.12e-09 | 2 |
unilaminar epithelium | 1.31e-08 | 148 |
lymphatic vessel | 3.11e-08 | 8 |
lymph vasculature | 3.11e-08 | 8 |
lymphatic part of lymphoid system | 3.11e-08 | 8 |
trunk mesenchyme | 3.48e-07 | 122 |