FFCP PHASE1:Hg19::chr5:59064458..59064511,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:59064458..59064511,-
|short_description=p1@PDE4D
|description=CAGE_peak_1_at_PDE4D_5end
|association_with_transcript=0bp_to_ENST00000502575,ENST00000507116...") |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5144 | |EntrezGene=5144 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8783 | |HGNC=8783 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000502575,ENST00000507116_5end | |||
|cluster_id=chr5:59064458..59064511,- | |||
|description=CAGE_peak_1_at_PDE4D_5end | |||
|id=chr5:59064458..59064511,- | |||
|ontology_enrichment_celltype=CL:0000236!2.77e-07!14;CL:0002139!7.10e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000236;2.80e-09;13!CL:0002139;1.51e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,3.80e-08,14;CL:0002139,1.04e-07,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.65e-14!115;UBERON:0001017!2.21e-10!82;UBERON:0005743!1.20e-09!86;UBERON:0000924!3.46e-09!173;UBERON:0006601!3.46e-09!173;UBERON:0000477!1.09e-08!286;UBERON:0004121!1.33e-08!169;UBERON:0000073!1.45e-08!94;UBERON:0001016!1.45e-08!94;UBERON:0000955!7.04e-08!69;UBERON:0006238!7.04e-08!69;UBERON:0002346!8.16e-08!90;UBERON:0001049!9.07e-08!57;UBERON:0005068!9.07e-08!57;UBERON:0006241!9.07e-08!57;UBERON:0007135!9.07e-08!57;UBERON:0002780!1.10e-07!41;UBERON:0001890!1.10e-07!41;UBERON:0006240!1.10e-07!41;UBERON:0002616!2.25e-07!59;UBERON:0003075!3.36e-07!86;UBERON:0007284!3.36e-07!86;UBERON:0000153!3.50e-07!129;UBERON:0007811!3.50e-07!129;UBERON:0003080!3.98e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.66e-13,114;UBERON:0011216,5.46e-13,223;UBERON:0001017,1.01e-10,81;UBERON:0001016,2.59e-09,89;UBERON:0001049,2.93e-08,56;UBERON:0005068,2.93e-08,56;UBERON:0006241,2.93e-08,56;UBERON:0007135,2.93e-08,56;UBERON:0002780,2.98e-08,41;UBERON:0001890,2.98e-08,41;UBERON:0003080,2.98e-08,41;UBERON:0006240,2.98e-08,41;UBERON:0000955,3.44e-08,68;UBERON:0006238,3.44e-08,68;UBERON:0002346,1.50e-07,86;UBERON:0004121,1.91e-07,171;UBERON:0000924,1.91e-07,171;UBERON:0006601,1.91e-07,171;UBERON:0000073,2.12e-07,53;UBERON:0002616,2.12e-07,53;UBERON:0003075,2.42e-07,82;UBERON:0007284,2.42e-07,82;UBERON:0004921,3.56e-07,118;UBERON:0003056,6.57e-07,61 | |||
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| ||
|short_description=p1@PDE4D | |||
}} | }} |
Latest revision as of 07:56, 18 September 2015
Short description: | p1@PDE4D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PDE4D_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000502575, ENST00000507116_5end |
EntrezGene: | PDE4D |
HGNC: | 8783 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 3.80e-08 | 14 |
endothelial cell of vascular tree | 1.04e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.66e-13 | 114 |
organ system subdivision | 5.46e-13 | 223 |
central nervous system | 1.01e-10 | 81 |
nervous system | 2.59e-09 | 89 |
neural tube | 2.93e-08 | 56 |
neural rod | 2.93e-08 | 56 |
future spinal cord | 2.93e-08 | 56 |
neural keel | 2.93e-08 | 56 |
regional part of forebrain | 2.98e-08 | 41 |
forebrain | 2.98e-08 | 41 |
anterior neural tube | 2.98e-08 | 41 |
future forebrain | 2.98e-08 | 41 |
brain | 3.44e-08 | 68 |
future brain | 3.44e-08 | 68 |
neurectoderm | 1.50e-07 | 86 |
ectoderm-derived structure | 1.91e-07 | 171 |
ectoderm | 1.91e-07 | 171 |
presumptive ectoderm | 1.91e-07 | 171 |
regional part of nervous system | 2.12e-07 | 53 |
regional part of brain | 2.12e-07 | 53 |
neural plate | 2.42e-07 | 82 |
presumptive neural plate | 2.42e-07 | 82 |
subdivision of digestive tract | 3.56e-07 | 118 |
pre-chordal neural plate | 6.57e-07 | 61 |