FFCP PHASE1:Hg19::chr19:42806505..42806542,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5050 | |EntrezGene=5050 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8576 | |HGNC=8576 | ||
|TSSclassifier=strong | |||
|UniProt=Q15102 | |UniProt=Q15102 | ||
|association_with_transcript=253bp_to_ENST00000262890,NM_002573,uc002otg.2_5end | |association_with_transcript=253bp_to_ENST00000262890,NM_002573,uc002otg.2_5end | ||
|cluster_id=chr19:42806505..42806542,- | |||
|coexpression_cluster_id=C1824 | |coexpression_cluster_id=C1824 | ||
|description=CAGE_peak_4_at_PAFAH1B3_5end | |description=CAGE_peak_4_at_PAFAH1B3_5end | ||
|id=chr19:42806505..42806542,- | |id=chr19:42806505..42806542,- | ||
|ontology_enrichment_celltype=CL:0000066!1.49e-29!254;CL:0002321!3.72e-27!248;CL:0000220!1.03e-26!246;CL:0000221!2.07e-11!71;CL:0000133!1.13e-09!59;CL:0000055!1.95e-09!180;CL:0002319!2.73e-09!25;CL:0000223!1.57e-08!59;CL:0000012!2.31e-08!682;CL:0000548!4.56e-08!679;CL:0000004!4.56e-08!679;CL:0000255!4.56e-08!679;CL:1000449!1.05e-07!16;CL:1000497!1.10e-07!18;CL:0002518!1.10e-07!18;CL:0000333!1.14e-07!41;CL:0002076!1.48e-07!43;CL:0000222!4.53e-07!119;CL:0000393!4.61e-07!60;CL:0000211!4.61e-07!60 | |ontology_enrichment_celltype=CL:0000066!1.49e-29!254;CL:0002321!3.72e-27!248;CL:0000220!1.03e-26!246;CL:0000221!2.07e-11!71;CL:0000133!1.13e-09!59;CL:0000055!1.95e-09!180;CL:0002319!2.73e-09!25;CL:0000223!1.57e-08!59;CL:0000012!2.31e-08!682;CL:0000548!4.56e-08!679;CL:0000004!4.56e-08!679;CL:0000255!4.56e-08!679;CL:1000449!1.05e-07!16;CL:1000497!1.10e-07!18;CL:0002518!1.10e-07!18;CL:0000333!1.14e-07!41;CL:0002076!1.48e-07!43;CL:0000222!4.53e-07!119;CL:0000393!4.61e-07!60;CL:0000211!4.61e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0002319;2.40e-10;25!CL:1000449;6.94e-09;15!CL:1000497;2.54e-08;17!CL:0002518;2.54e-08;17!CL:0002681;2.79e-07;12!CL:0002584;2.79e-07;12!CL:1000507;4.34e-07;10!CL:1000494;4.34e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.10e-30,253;CL:0002321,1.74e-28,250;CL:0000221,1.36e-12,72;CL:0000133,1.85e-10,59;CL:0002319,5.53e-10,25;CL:1000449,5.49e-09,15;CL:0000223,1.58e-08,58;CL:0000333,2.12e-08,41;CL:1000497,2.14e-08,17;CL:0002518,2.14e-08,17;CL:0002076,9.79e-08,42;CL:0002681,1.73e-07,12;CL:0002584,1.73e-07,12;CL:0000222,3.37e-07,121;CL:1000507,4.85e-07,10;CL:1000494,4.85e-07,10;CL:0000393,6.58e-07,61;CL:0000211,6.58e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.12e-09!143;DOID:305!4.05e-09!106;DOID:162!3.26e-08!235;DOID:14566!4.99e-08!239 | |ontology_enrichment_disease=DOID:0050687!1.12e-09!143;DOID:305!4.05e-09!106;DOID:162!3.26e-08!235;DOID:14566!4.99e-08!239 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.16e-08,106;DOID:0050687,4.50e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0000481!2.47e-14!347;UBERON:0000475!3.99e-12!365;UBERON:0000119!2.00e-11!312;UBERON:0000483!1.16e-10!309;UBERON:0003104!1.73e-10!238;UBERON:0009142!1.73e-10!238;UBERON:0000064!4.47e-08!219;UBERON:0002100!5.11e-08!216;UBERON:0004211!1.05e-07!16;UBERON:0001285!1.05e-07!16;UBERON:0007684!1.05e-07!16;UBERON:0003220!1.05e-07!16;UBERON:0004208!1.05e-07!16;UBERON:0002113!1.36e-07!27;UBERON:0003918!1.36e-07!27;UBERON:0005095!1.36e-07!27;UBERON:0007687!1.36e-07!27;UBERON:0000063!1.80e-07!97;UBERON:0000477!2.56e-07!286;UBERON:0005177!5.69e-07!107;UBERON:0000468!6.08e-07!659;UBERON:0008947!6.77e-07!38;UBERON:0003258!6.77e-07!38;UBERON:0000922!7.62e-07!612;UBERON:0005256!8.25e-07!143;UBERON:0004119!8.65e-07!169;UBERON:0000925!8.65e-07!169;UBERON:0006595!8.65e-07!169;UBERON:0006555!8.69e-07!17;UBERON:0005103!8.69e-07!17;UBERON:0000083!8.69e-07!17;UBERON:0009201!8.69e-07!17;UBERON:0004819!8.69e-07!17;UBERON:0006553!8.69e-07!17;UBERON:0003074!8.69e-07!17;UBERON:0003060!8.69e-07!17 | |ontology_enrichment_uberon=UBERON:0000481!2.47e-14!347;UBERON:0000475!3.99e-12!365;UBERON:0000119!2.00e-11!312;UBERON:0000483!1.16e-10!309;UBERON:0003104!1.73e-10!238;UBERON:0009142!1.73e-10!238;UBERON:0000064!4.47e-08!219;UBERON:0002100!5.11e-08!216;UBERON:0004211!1.05e-07!16;UBERON:0001285!1.05e-07!16;UBERON:0007684!1.05e-07!16;UBERON:0003220!1.05e-07!16;UBERON:0004208!1.05e-07!16;UBERON:0002113!1.36e-07!27;UBERON:0003918!1.36e-07!27;UBERON:0005095!1.36e-07!27;UBERON:0007687!1.36e-07!27;UBERON:0000063!1.80e-07!97;UBERON:0000477!2.56e-07!286;UBERON:0005177!5.69e-07!107;UBERON:0000468!6.08e-07!659;UBERON:0008947!6.77e-07!38;UBERON:0003258!6.77e-07!38;UBERON:0000922!7.62e-07!612;UBERON:0005256!8.25e-07!143;UBERON:0004119!8.65e-07!169;UBERON:0000925!8.65e-07!169;UBERON:0006595!8.65e-07!169;UBERON:0006555!8.69e-07!17;UBERON:0005103!8.69e-07!17;UBERON:0000083!8.69e-07!17;UBERON:0009201!8.69e-07!17;UBERON:0004819!8.69e-07!17;UBERON:0006553!8.69e-07!17;UBERON:0003074!8.69e-07!17;UBERON:0003060!8.69e-07!17 | ||
|ontology_enrichment_uberon_v019=UBERON:0006554;4.26e-10;30!UBERON:0001008;4.26e-10;30!UBERON:0002113;2.62e-09;24!UBERON:0011143;2.62e-09;24!UBERON:0006555;6.94e-09;15!UBERON:0004819;6.94e-09;15!UBERON:0001285;6.94e-09;15!UBERON:0007684;6.94e-09;15!UBERON:0005911;4.85e-08;36!UBERON:0000489;1.18e-07;29!UBERON:0001225;2.79e-07;12!UBERON:0008987;2.79e-07;12!UBERON:0004211;4.34e-07;10!UBERON:0009773;4.34e-07;10!UBERON:0001231;4.34e-07;10!UBERON:0004810;4.34e-07;10!UBERON:0000353;4.71e-07;15!UBERON:0000072;5.04e-07;37 | |||
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| ||
|short_description=p4@PAFAH1B3 | |short_description=p4@PAFAH1B3 | ||
}} | }} |
Latest revision as of 08:51, 18 September 2015
Short description: | p4@PAFAH1B3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PAFAH1B3_5end |
Coexpression cluster: | C1824_Alveolar_nonsmall_brain_duodenum_Neurons_Renal_temporal |
Association with transcript: | 253bp_to_ENST00000262890, NM_002573, uc002otg.2_5end |
EntrezGene: | PAFAH1B3 |
HGNC: | 8576 |
UniProt: | Q15102 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.10e-30 | 253 |
embryonic cell | 1.74e-28 | 250 |
ectodermal cell | 1.36e-12 | 72 |
neurectodermal cell | 1.85e-10 | 59 |
neural cell | 5.53e-10 | 25 |
epithelial cell of nephron | 5.49e-09 | 15 |
endodermal cell | 1.58e-08 | 58 |
migratory neural crest cell | 2.12e-08 | 41 |
kidney cell | 2.14e-08 | 17 |
kidney epithelial cell | 2.14e-08 | 17 |
endo-epithelial cell | 9.79e-08 | 42 |
kidney cortical cell | 1.73e-07 | 12 |
renal cortical epithelial cell | 1.73e-07 | 12 |
mesodermal cell | 3.37e-07 | 121 |
kidney tubule cell | 4.85e-07 | 10 |
nephron tubule epithelial cell | 4.85e-07 | 10 |
electrically responsive cell | 6.58e-07 | 61 |
electrically active cell | 6.58e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
cell layer | 2.40e-10 | 309 |
epithelium | 1.39e-09 | 306 |
nephron epithelium | 5.49e-09 | 15 |
renal tubule | 5.49e-09 | 15 |
nephron tubule | 5.49e-09 | 15 |
nephron | 5.49e-09 | 15 |
uriniferous tubule | 5.49e-09 | 15 |
nephrogenic mesenchyme | 5.49e-09 | 15 |
kidney | 3.49e-08 | 26 |
kidney mesenchyme | 3.49e-08 | 26 |
upper urinary tract | 3.49e-08 | 26 |
kidney rudiment | 3.49e-08 | 26 |
kidney field | 3.49e-08 | 26 |
excretory tube | 6.01e-08 | 16 |
kidney epithelium | 6.01e-08 | 16 |
cortex of kidney | 1.73e-07 | 12 |
renal parenchyma | 1.73e-07 | 12 |
urinary system structure | 2.98e-07 | 47 |
parenchyma | 3.75e-07 | 15 |
nephron tubule epithelium | 4.85e-07 | 10 |
embryo | 5.65e-07 | 592 |
respiratory primordium | 7.17e-07 | 38 |
endoderm of foregut | 7.17e-07 | 38 |
renal system | 7.92e-07 | 48 |
cavitated compound organ | 9.33e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.16e-08 | 106 |
cell type cancer | 4.50e-08 | 143 |