FFCP PHASE1:Hg19::chr19:42806919..42806958,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5050 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8576 | |||
|TSSclassifier=strong | |||
|UniProt=Q15102 | |||
|association_with_transcript=0bp_to_ENST00000538771,NM_001145939,NM_001145940,uc010xwi.1,uc010xwj.1_5end | |||
|cluster_id=chr19:42806919..42806958,- | |||
|description=CAGE_peak_3_at_PAFAH1B3_5end | |||
|id=chr19:42806919..42806958,- | |||
|ontology_enrichment_celltype=CL:0000988!1.27e-09!182;CL:0000037!3.33e-08!172;CL:0000566!3.33e-08!172;CL:0002057!1.11e-07!42;CL:0002032!2.60e-07!165;CL:0000837!2.60e-07!165;CL:0000034!3.55e-07!444;CL:0000860!5.73e-07!45 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.52e-10,177;CL:0000037,4.55e-09,168;CL:0002032,3.99e-08,161;CL:0000837,3.99e-08,161;CL:0000860,1.21e-07,42;CL:0002057,1.21e-07,42;CL:0000763,1.60e-07,108;CL:0000049,1.60e-07,108;CL:0000034,2.22e-07,441;CL:0000473,5.30e-07,48;CL:0000234,5.30e-07,48 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1240!3.93e-08!39;DOID:2531!6.21e-08!51;DOID:0060083!6.21e-08!51;DOID:8692!1.72e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;2.48e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,3.49e-08,39;DOID:2531,4.48e-08,51;DOID:0060083,4.48e-08,51;DOID:8692,1.55e-07,31 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0.363356758541113,0.642301571672949,0.140954404095971,2.00146596706261,0.893922188854576,0.872338524100369,0,0.631719873426831,0.522371256399677,1.47440361900905,2.79120467188971,0.436882744260345,0.263766978228454,4.70312141248177,4.97096063591874,3.36162573225888,3.01347264011988,3.65155045193687,3.90346239032406,11.2040162849877,9.38403179723564,9.09018692286455,5.72471974262113,5.06435372769671,4.77062030460251,2.21598876669059,2.62721886239826,2.36132343941038,3.93364276848904,1.91914699048606,3.2511385896376,0.919421224478927,0.6024118375565,0,4.49309763365749,2.55904618477359,12.6248188913984,2.76997704265939,3.00816671205213,0.868043482863407,5.15005590751826,1.94336199611388,2.06060454107349,5.67053131240302,1.88937971844405,2.42584061187816,6.27558399645349,2.05583944010913,2.16794459626573,4.31538588483226,6.66017836975662,4.49316236788312,5.86067657252252,4.51839278508678,2.70852973188684,3.57660445130949,4.09359225086769,2.69668181334102,3.36692281607993,6.41858054152187,3.83602275479425,2.96866170168044,4.9865914405408,2.13112375266347,4.93355705668593,8.5107783703671,1.86846674698672,3.76872997885115,6.25779502104242,2.82345498116652,5.44859552370032,6.62899744777616,4.1140110367315,4.85887158517466,6.37812899895131,6.49941801075965,6.51506060649672,5.55654503513573,2.57160938715328,5.41524213108372,2.98375015798635,4.01861138282195,3.51992488922645,1.63841583378639,6.22656477704488,4.26730222566507,4.80475184443215,2.29900975981793,6.61044872784862,3.81621501814146,1.1384259382189,2.93618594685469,2.6759125968766,10.5737062863221,7.8471198817415,8.42829071280246,1.57367816091066,1.57204305099666,1.43921049299656,2.00623794468814,3.58514493296949,5.20792586308207,1.94826728407911,1.78256731016278,1.76763544484902,2.43687284041983,0.541607727530031,1.79327847615945,2.08094956095805,3.94650971048823,5.52700035571697,1.73881851441031,3.11401782640327,2.67540828089713,3.1360657141493,2.15287751125376,1.91610246800961,3.77990190030893,0.506039384039006,2.54852331459277,3.90650072313851,4.75226022224187,2.10805166708882,2.30375900077953,6.24653632761729,2.8413270245282,0.821127996921047,1.20964045934839,1.06976078313403,0.724122019413995,4.87613732627923,0,1.66221330396589,2.89151321907653,3.00802746381534,3.33146993609895,3.1811437882044,0.486634870302636,3.78139268656271,3.54767035940102,1.93236528524877,2.61958150995425,2.18577172975525,0.370784442784429,0.97364218096405,0.870648686496336,1.32957960518865,4.29283123749616,6.86393892936153,5.94332002127304,6.75792185046797,0.860234595106124,6.2485290289367,2.26123176769604,3.35599548967925,7.42818713238182,2.50793959844173,4.65150166504792,2.84613010149368,2.00832367658802,5.63961043952806,5.32190474002959,5.36936526605973,2.94130464276695,7.29127753093584,2.67899184852239,0.898117490504679,1.80178368773316,7.66583187329416,7.59412527654503,5.1296488300514,0,0,1.74437620857014,0.496971951695318,2.78587125662075,1.05927344650575,0.573673241497627,4.25602058638028,2.80338800071154,1.06748995729705,3.45334567784024,3.11211035399766,1.88594940897563,1.30769522490767,4.38936540170301,5.18558332031999,3.51482147750695,5.93104145977609,0,3.13842229158782,2.70099346880659,3.88495066483516,2.80901613404497,1.22492502752936,3.68502951935304,1.65321249881225,2.37600571456411,1.97813543422845,1.82032272387605,2.87447256726495,2.69337782326506,3.87867411603089,1.38532057742091,1.31693286264251,3.0648779579902,1.80285670687916,2.60894021268048,0.538168907066586,2.77624605464138,1.27159140695737,1.50045548042201,2.37020817248409,0.772921620136887,1.67505170698431,0.675105328965065,1.65642908774038,1.00973509697646,2.94559675655358,2.26304479546337,0.355009592516614,2.21654616100809,3.56077243852024,0.386521706326594,0.545492241181669,0,12.4413180252187,9.012024245861,9.41170937243099,4.97573064073778,7.0649838245176,9.85438869504741,0,4.5026865673502,1.38134921352481,1.85747171212792,1.44375896333917,2.83936320095625,2.52877035117153,1.68707720918437,2.09558548191549,1.74303555273925,1.89816495288877,2.15730093056263,2.5508790466295,1.92373578473195,3.69077727312324,9.81692416624121,3.7041661019826,2.94017422771084,1.26755034821831,0,2.95394953340702,8.38779888887836,1.35287282397425,2.23038153388083,0.439001141634502,1.1240175325762,0.201057944823262,0.555530670951178,3.9096996637239,1.03993478527958,5.77325368101093,5.10093781890338,0.939269553886573,5.05282567163758,6.01881166349594,4.75635380586496,3.1608175918371,3.43394464837949,1.96973604869918,0.234004265139238,1.48631162288728,0,0.335964256397719,0.425325291727159,1.25381931783988,0.871901815541886,1.53353071666084,1.47798971368783,4.49047013467453,0.621984346622316,2.01767934783746,1.13618190083742,6.09579785204823,6.49380323449072,9.37739577680376,3.4214489204541,4.42158218624291,3.30377363628309,3.42991719156694,4.14885012077835,3.92364061949952,5.7203862940341,3.23179289394444,14.3062578340753,1.690605505112,0.797814349754612,2.08014873822732,3.34369586540785,1.41849132023278,4.52917704327369,0.857867961948885,5.96883765930587,4.11620168390384,1.95441710576241,1.77695974371273,2.37585561880029,0.301439377059586,0,0.599837947092342,2.43247561282381,3.51579964002488,8.43335757932127,2.15662369942424,3.44585807502342,1.42636905040718,1.88215698667853,2.87666851570537,2.50685348535854,4.70757604772815,0.394061520403854,1.2937654491571,1.15508732651774,12.7047312111232,5.20559415430487,21.6520867577755,12.2286873694075,12.1208362814101,0,0,0,5.27573414392302,9.50323990013386,4.06897535549603,1.03985430765404,2.14114786556594,1.41932173530541,1.7571212248907,4.21324539618807,6.82222512167955,9.31257641632544,1.32845119707087,4.24049087645917,2.86715927744673,16.8388995417957,11.6668764095691,1.24060815673732,2.15714200818617,2.66818894508611,2.42502057157008,4.99306318531491,1.81434175997808,0.496215615637554,0.306923946576125,1.96462066103151,0.768834895534206,0.511707249066704,0.482561763430822,2.96836132889982,1.54209693802656,1.24293207719189,3.03870477251094,0.519254429183621,1.27831416305955,1.32945394550784,0,0.460404944679482,2.06666006696292,1.45672934405374,3.67148361886388,1.35359883872224,1.23224539367064,4.70609861506113,5.84556898613043,0.844413031143006,5.68666920354483,4.93271745301895,2.37507507712353,12.3381802152231,5.41892875087706,2.50844886927427,1.27438136522519,0.831076008928724,1.56712328305525,4.60445740956463,3.66009631434861,2.3080511260475,1.64007322849853,4.22991913063594,1.13345112812495,4.57847324091717,4.04296549610881,0,0,0,11.9871690682231,2.61882649094895,1.99554777143968,2.75673144969061,2.68550612170684,3.48040065394148,3.57951835147624,5.9651463883314,0.165284915360978,0.384380134730212,0,0.4046311234222,2.32422774648643,0.62962469366128,2.0911118104818,2.15623506123262,1.59691809095107,0.869932992075073,1.29726953372744,0.858749320451947,5.21021717103534,2.21465597303108,0.762520775695299,7.16513815671735,6.41908482050881,3.18203247925937,4.70969184119538,1.43897966066652,2.47083326762449,2.00281083987667,1.61745985258653,3.17020642346017,2.10629228119491,3.41343617362713,0.731140468893853,3.16950440270266,2.18399858252777,1.97967604735198,6.78048699721457,3.30819206127675,0.66343897524122,1.31535265576129,2.89387767133344,7.21484227251296,1.62328301570163,4.3375289733965,5.91560765317707,3.15504974848913,1.76848273823618,1.07001315444375,3.90237170477658,3.37772216476263,0.658589785919804,4.17420491142287,6.29882496440969,1.05844323998063,1.34060455107157,1.08890984861323,0.941438007767792,0.43050537267123,1.68471475667626,1.33029046061003,0.918893600827838,1.01489521846434,3.82318603571188,1.70894156152249,2.62054953003568,0.822724546172388,1.94541993357815,1.62009431171434,1.58625035258854,1.81600920916704,5.77487913158015,1.47024129588619,1.30062222588003,7.64626828775158,2.77453189058815,4.62336190913585,3.99158742865633,5.93666647410337,6.35020748171649,4.86932910411833,1.12318871245384,6.16233633389619,3.76031749855256,10.0253790836027,3.72441911163527,11.0805771821553,4.03599414382095,1.27753871307098,7.21361223987106,6.75929681478608,8.05233988412697,5.67287081820489,2.9308214310306,4.45449878232388,2.46174797895425,8.11367035427949,5.32915148796512,4.22961015263549,0,2.05111450980652,8.73795756596497,1.33732061132974,2.27308917445131,0.71623345421307,1.18785872333055,1.22864280839693,3.97659059106519,3.79807424308384,3.56187856073299,1.6480387422676,1.68900326502395,1.39473591775749,1.10513566212459,1.76352923497993,1.1249555075237,3.07712013652674,0.311039587661807,0.359473404589307,0.358042349351218,15.3471711068062,1.1837208676432,2.3948309234694,0,1.93866549219044,2.22643435588443,29.9420697001791,1.30213880542617,0.61221999997337,1.44999915086959,0.910347586283997,0.508507300585533,1.18193840883968,4.13692047889758,1.16641845353302,8.50762475173132,1.77148277162768,3.85908603601305,0,2.87506075821184,1.47773809476774,1.97446857438575,3.59496929612668,0.697118721393016,2.77020930613669,8.77353830021909,0.46112780877612,1.34636466614658,1.52106320690811,0.957003479195758,0.549585560411174,1.06606955203727,9.19739683761629,5.33732871743084,4.82013877510454,2.93274358802335,4.11731322067253,1.1747511088309,1.51802986179348,6.6753363171759,2.53197677433632,0.326465616318295,1.27217764290547,2.16388639742091,2.98578579323551,0.707660516026713,1.83309043480088,1.77912677208373,3.45979029050208,4.9078316267564,3.57226004797588,2.40773294189637,2.34264445725339,7.84555593627364,0.586993856796269,2.42780379534093,1.97292201424695,1.20990716048664,16.5279291280465,1.70603764996917,1.35291077473043,3.31802212471191,1.99396161812156,6.95083107338548,1.2557316736289,1.19472429772959,1.13843818411917,7.21108299668321,2.2562765983567,0.881931576729399,0.870592065804026,1.39781334593624,3.26773461696071,2.03188295707079,1.46178634172371,1.97077096927702,2.5217144286989,3.44198894096851,4.74559555639118,3.01492234222852,1.78843150532691,1.70939149080872,1.75996244461323,3.92778219232515,0.85381197895741,1.79828648623917,2.3054466744657,6.87219576995494,9.95250987599394,2.59298636378669,0.49701014226173,1.17847017308398,2.8539883275459,4.81173093036733,2.24396078799908,4.6232094384243,3.00210144354895,2.19048606227189,6.38732940334862,0.859530882839914,3.6804229599104,0,0.229160424011684,0.717873024576814,0.599037001496973,0.429226048136571,0.446342914883745,1.94832070211506,0,0,2.52106183383116,2.55489160981616,2.49393112260484,1.47641222272123,2.03215996957883,3.18091875923721,3.94989877723569,12.5387455802715,9.62776056180637,9.97056811270044,2.4747128070665,2.32140586367385,3.64497339948148,0.670869375198532,0.945668487590378,2.51782023047991,1.5840050477911,4.48218348332112,1.34340638123612,1.42939065274673,0.662091970365432,2.28841683889275,1.08599920350743,0,1.30634944043764,15.5649249031234,4.76136620346166,2.04465626142506,1.69968137280189,0.879313402068495,2.65013777824443,1.80996138906171,3.04134984008187,4.61934462287689,0.704815022316672,1.06787412567695,1.88645166119599,1.65695622138878,2.97699613087171,2.37133958277533,3.41019275466509,0,0,0,0,0.327872630709804,3.29813602125492,2.65820453990096,1.46431517882356,2.754200475543,1.72022758707021,2.77322628842131,2.04918129706565,4.01211041315069,1.74972571146949,0.758245587708239,6.28023733798928,0.470531639396343,4.68334905806882,1.44921028610825,2.68658645196373,2.80455971816669,1.66441758450784,3.59865710022669,4.27665432979378,0,2.05956061557231,3.78077309408098,0.932623203496683,1.33069634990671,2.07085797312813,3.14862178514523,1.86315548251511,2.07353103920428,2.12673371646396,4.17396049449387,2.40412174395549,0.761610424337591,0.813741466409323,0.909243296012797,1.8259794697223,5.56840511854192,1.59238355479446,5.60038870528415,5.83772698810748,5.05124233148879,0,2.31143796488764,1.07220795687463,1.04397716786085,1.13352962756136,1.389134845943,1.22368352253234,0.895444205407437,1.54400723580486,1.53498834705095,0.883445729729405,0.578742114812744,0.168942440653073,4.09986429740715,3.45430341731199,0.607719912354764,3.45646090379327,1.7537427795545,0.398594520940089,0.817826971279221,2.94848863961771,1.72041036127604,1.05656061679314,3.9997479170986,5.54796994409533,4.82201943050284,1.13503190713367,2.76158925377761,0.419638523158333,0,7.03419042170084,4.52864207866064,1.41539347670307,12.6683180302736,3.56438312903453,30.3982135745407,7.56008161979913,5.02780426175919,0.954013051960256,3.78536376006016,3.20228299314188,2.46873160583479,1.531227386766,2.11956442818316,1.41696576325585,2.71377560397157,3.28186182785208,21.1740224826243,3.1120763608898,4.68279372332368,2.85538840518309,0.490738592505128,0.353909170043221,0.917142992608395,1.03973099535304,0,2.7614397042404,6.96206777406961,3.38446477571658,0.60511520611056,0.781514011233092,1.04762677792569,3.60298218522213,1.03499260351932,2.36381546164381,0,2.68692835451539,1.9024743058172,20.7850427426923,1.64477330057155,0.496211178389294,5.9796223082271,0.638812138197976,2.14280734351315,0.336283722218824,1.21393120847326,1.13831095675649,1.1531308121143,3.57225361422916,1.02892805662451,1.56330385846713,3.28863867814245,1.89110145414349,0,1.33438257845874,2.19961825882403,0.840816489941367,2.73947616152849,2.15927591218621,0.9555033757741,2.07281978112303,1.73814972905999,1.3948971044175,5.0418898967748,2.40513409419076,2.48659396995644,1.87790324803345,0,0.430227358820278,3.0766320189947,3.23810938084799,0.846774100381858,0.9164274741762,3.41227024230752,1.91107787795487,0.447421727191169,0.687051635306701,0.731507549893617,1.29485767437579,1.7452677165562,13.9177731760584,1.45713297917742,1.16969731731053,0.994753875806841,19.859655159854,0,4.39762066981717,0.754814217833368,1.15761237161917,4.37119121007915,3.76253837089218,0.980593287015622,1.88541237681301,4.12247780941385,2.97046400327086,6.339835913751,1.52934403219035,2.53756578545605,2.8361470708374,1.59905849479886,0.178553938605658,0,2.08627553391837,1.46067277649303,1.37618785021362,3.01013124618048,4.57537530360235,4.07948941145488,12.2178193295306,2.1161073620616,2.60396512716726,0.924351257262837,0.865253124247578,3.40649347054713,0.98339014767326,2.78736702225161,1.22386595690378,6.14600032110789,1.10273879441814,2.50707539292375,1.97024615367422,2.14371304124943,3.31667775783512,4.96478380137097,1.27940389140589,4.28515976634733,4.52122368852043,2.17261500035503,2.13050538903166,1.0820016907288,0.808468755832877,0.653150243690884,4.10679961302337,1.75115337837928,1.07583308089015,1.66330178273007,1.22104902916462,1.60091018816573,1.9307228228694,1.43720323370539,0,3.05603610457166,6.51033885305182,3.32878387092756,3.42165449104745,2.24397944612263 | |||
|short_description=p3@PAFAH1B3 | |||
}} |
Latest revision as of 09:00, 18 September 2015
Short description: | p3@PAFAH1B3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PAFAH1B3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000538771, NM_001145939, NM_001145940, uc010xwi.1, uc010xwj.1_5end |
EntrezGene: | PAFAH1B3 |
HGNC: | 8576 |
UniProt: | Q15102 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.52e-10 | 177 |
hematopoietic stem cell | 4.55e-09 | 168 |
hematopoietic oligopotent progenitor cell | 3.99e-08 | 161 |
hematopoietic multipotent progenitor cell | 3.99e-08 | 161 |
classical monocyte | 1.21e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.21e-07 | 42 |
myeloid cell | 1.60e-07 | 108 |
common myeloid progenitor | 1.60e-07 | 108 |
stem cell | 2.22e-07 | 441 |
defensive cell | 5.30e-07 | 48 |
phagocyte | 5.30e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
leukemia | 3.49e-08 | 39 |
hematologic cancer | 4.48e-08 | 51 |
immune system cancer | 4.48e-08 | 51 |
myeloid leukemia | 1.55e-07 | 31 |