FFCP PHASE1:Hg19::chr15:59908915..59908930,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9245 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4205 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=185bp_to_ENST00000560210_5end | |||
|cluster_id=chr15:59908915..59908930,+ | |||
|coexpression_cluster_id=C3501 | |||
|description=CAGE_peak_5_at_GCNT3_5end | |||
|id=chr15:59908915..59908930,+ | |||
|ontology_enrichment_celltype=CL:0002076!4.84e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0000167;9.08e-12;1!CL:0000164;9.08e-12;1!CL:0000502;9.08e-12;1!CL:0000172;9.08e-12;1!CL:0000173;9.08e-12;1!CL:0002149;1.65e-07;6!CL:0002255;1.65e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,9.57e-12,1;CL:0000164,9.57e-12,1;CL:0000502,9.57e-12,1;CL:0000172,9.57e-12,1;CL:0000173,9.57e-12,1;CL:0002351,9.57e-12,1;CL:0002149,1.63e-07,6;CL:0002255,1.63e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002351;9.08e-12;1!UBERON:0006298;2.42e-11;1!UBERON:0009143;4.22e-11;1!UBERON:0008801;4.22e-11;1 | |||
|ontology_enrichment_disease=DOID:4468!1.77e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:4430;9.08e-12;1!DOID:3001;1.65e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,9.57e-12,1;DOID:3001,1.63e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0003408!1.56e-11!10;UBERON:0006562!1.32e-10!11;UBERON:0004119!6.81e-10!169;UBERON:0000925!6.81e-10!169;UBERON:0006595!6.81e-10!169;UBERON:0004921!1.27e-09!129;UBERON:0004185!1.27e-09!129;UBERON:0001044!1.61e-09!6;UBERON:0003293!1.61e-09!6;UBERON:0003294!1.61e-09!6;UBERON:0010047!1.61e-09!6;UBERON:0000167!1.61e-09!6;UBERON:0001004!2.52e-09!72;UBERON:0000078!1.12e-08!18;UBERON:0003127!1.67e-08!2;UBERON:0001042!2.71e-08!10;UBERON:0009145!2.71e-08!10;UBERON:0000341!4.16e-08!2;UBERON:0001829!4.16e-08!2;UBERON:0000065!1.04e-07!53;UBERON:0001041!1.30e-07!98;UBERON:0000166!2.80e-07!21;UBERON:0001007!4.59e-07!155;UBERON:0001555!4.59e-07!155;UBERON:0007026!4.59e-07!155;UBERON:0000077!6.79e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0003127;1.25e-21;2!UBERON:0001829;1.11e-20;2!UBERON:0001044;2.47e-15;6!UBERON:0003293;2.47e-15;6!UBERON:0003294;2.47e-15;6!UBERON:0010047;2.47e-15;6!UBERON:0003408;2.47e-15;6!UBERON:0000167;2.47e-15;6!UBERON:0001723;3.39e-14;3!UBERON:0001033;3.39e-14;3!UBERON:0000165;2.37e-12;28!UBERON:0002372;1.45e-11;1!UBERON:0001961;1.45e-11;1!UBERON:0001744;1.45e-11;1!UBERON:0001042;1.45e-11;1!UBERON:0001735;1.45e-11;1!UBERON:0001041;1.89e-11;14!UBERON:0001736;2.42e-11;1!UBERON:0001831;4.22e-11;1!UBERON:0001567;4.22e-11;1!UBERON:0004921;3.27e-09;33!UBERON:0000161;1.40e-08;19!UBERON:0000166;1.40e-08;19!UBERON:0003126;8.13e-07;7!UBERON:0001005;8.13e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003127,1.12e-21,2;UBERON:0001829,1.57e-20,2;UBERON:0000166,8.71e-16,22;UBERON:0001044,2.73e-15,6;UBERON:0003293,2.73e-15,6;UBERON:0003294,2.73e-15,6;UBERON:0010047,2.73e-15,6;UBERON:0000167,2.73e-15,6;UBERON:0001723,3.62e-14,3;UBERON:0001033,3.62e-14,3;UBERON:0010056,3.62e-14,3;UBERON:0000161,9.55e-13,36;UBERON:0000165,6.92e-12,29;UBERON:0000930,6.92e-12,29;UBERON:0002372,1.45e-11,1;UBERON:0001961,1.45e-11,1;UBERON:0001744,1.45e-11,1;UBERON:0001735,1.45e-11,1;UBERON:0001736,2.68e-11,1;UBERON:0006298,2.68e-11,1;UBERON:0001831,5.43e-11,1;UBERON:0001567,5.43e-11,1;UBERON:0008801,5.43e-11,1;UBERON:0001042,1.40e-09,10;UBERON:0009145,1.40e-09,10;UBERON:0003408,2.11e-09,10;UBERON:0006562,9.38e-09,11;UBERON:0004921,1.78e-08,118;UBERON:0001041,4.35e-08,87;UBERON:0001004,1.08e-07,74;UBERON:0000153,3.56e-07,62;UBERON:0007811,3.56e-07,62;UBERON:0001444,7.32e-07,49;UBERON:0003126,7.90e-07,7;UBERON:0001005,7.90e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47329582297434,0,0,0,0.451199612907412,0.462092022626489,0,0,0.105551628892876,0,0,0,0,0,0,1.01950509218015,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0.638063562472921,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79323189425963,0,0,0,0,0,0,0.358042349351218,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0.41827123283581,0.923403102045565,0,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0.632994193584081,0.163232808159148,0,0,0,0.176915129006678,2.4441205797345,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0.569219092059585,0,2.42983633669183,0,0,0,0,0.0967563312890851,0,0,1.74580229679155,0,4.06765333404958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394028536495991,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376051641746286,0,0,0,0,0.147856086217045,0,0,0,0,0,1.09651553371436,0,0,0.894336993477167,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0.414432328326074,0,0,1.72090943528111,0,0,0,1.60374807980835,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0.0771741581079447,0,3.76253837089218,0,9.66273843116666,0,0,0,0,0,0,0,6.24938785119802,0.352894871715692,0,0,2.2936464170227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,7.88965733033629,0.476128862927481,0.129177819672012,0.186224142887574,0,0,0,1.30630048738177,3.76456631193809,5.85962861226911,6.52672069073355,9.9798106963804,0,0,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p5@GCNT3 | |||
}} |
Latest revision as of 09:12, 18 September 2015
Short description: | p5@GCNT3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_GCNT3_5end |
Coexpression cluster: | C3501_somatostatinoma_tonsil_throat_trachea_endometrioid_salivary_smallcell |
Association with transcript: | 185bp_to_ENST00000560210_5end |
EntrezGene: | GCNT3 |
HGNC: | 4205 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 9.57e-12 | 1 |
enteroendocrine cell | 9.57e-12 | 1 |
type D enteroendocrine cell | 9.57e-12 | 1 |
somatostatin secreting cell | 9.57e-12 | 1 |
pancreatic D cell | 9.57e-12 | 1 |
progenitor cell of endocrine pancreas | 9.57e-12 | 1 |
epithelial cell of uterus | 1.63e-07 | 6 |
stromal cell of endometrium | 1.63e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
open tracheal system trachea | 1.12e-21 | 2 |
major salivary gland | 1.57e-20 | 2 |
oral opening | 8.71e-16 | 22 |
saliva-secreting gland | 2.73e-15 | 6 |
gland of oral region | 2.73e-15 | 6 |
gland of foregut | 2.73e-15 | 6 |
oral gland | 2.73e-15 | 6 |
oral cavity | 2.73e-15 | 6 |
tongue | 3.62e-14 | 3 |
gustatory system | 3.62e-14 | 3 |
future tongue | 3.62e-14 | 3 |
orifice | 9.55e-13 | 36 |
mouth | 6.92e-12 | 29 |
stomodeum | 6.92e-12 | 29 |
tonsil | 1.45e-11 | 1 |
mucosa-associated lymphoid tissue | 1.45e-11 | 1 |
lymphoid tissue | 1.45e-11 | 1 |
tonsillar ring | 1.45e-11 | 1 |
submandibular gland | 2.68e-11 | 1 |
submandibular gland primordium | 2.68e-11 | 1 |
parotid gland | 5.43e-11 | 1 |
cheek | 5.43e-11 | 1 |
parotid gland primordium | 5.43e-11 | 1 |
chordate pharynx | 1.40e-09 | 10 |
pharyngeal region of foregut | 1.40e-09 | 10 |
gland of gut | 2.11e-09 | 10 |
pharynx | 9.38e-09 | 11 |
subdivision of digestive tract | 1.78e-08 | 118 |
foregut | 4.35e-08 | 87 |
respiratory system | 1.08e-07 | 74 |
anterior region of body | 3.56e-07 | 62 |
craniocervical region | 3.56e-07 | 62 |
subdivision of head | 7.32e-07 | 49 |
trachea | 7.90e-07 | 7 |
respiratory airway | 7.90e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 9.57e-12 | 1 |
female reproductive endometrioid cancer | 1.63e-07 | 6 |