FFCP PHASE1:Hg19::chr6:35181783..35181815,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=222663 | |EntrezGene=222663 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13655 | |HGNC=13655 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IX30,Q8NAV8 | |UniProt=Q8IX30,Q8NAV8 | ||
|association_with_transcript=-374bp_to_ENST00000394681,NM_152753,uc003okf.1,uc003okg.1_5end | |association_with_transcript=-374bp_to_ENST00000394681,NM_152753,uc003okf.1,uc003okg.1_5end | ||
|cluster_id=chr6:35181783..35181815,+ | |||
|coexpression_cluster_id=C519 | |||
|description=CAGE_peak_2_at_SCUBE3_5end | |description=CAGE_peak_2_at_SCUBE3_5end | ||
|id=chr6:35181783..35181815,+ | |id=chr6:35181783..35181815,+ | ||
|ontology_enrichment_celltype=CL:0000055!5.35e-32!180;CL:0000057!3.47e-14!75;CL:0000680!5.98e-11!57;CL:0000056!5.98e-11!57;CL:0000355!5.98e-11!57;CL:0000183!1.19e-10!59;CL:0000187!7.59e-10!54;CL:0002334!1.48e-09!12;CL:0000393!5.40e-09!60;CL:0000211!5.40e-09!60;CL:0002620!7.16e-09!23;CL:0000499!2.75e-08!27 | |ontology_enrichment_celltype=CL:0000055!5.35e-32!180;CL:0000057!3.47e-14!75;CL:0000680!5.98e-11!57;CL:0000056!5.98e-11!57;CL:0000355!5.98e-11!57;CL:0000183!1.19e-10!59;CL:0000187!7.59e-10!54;CL:0002334!1.48e-09!12;CL:0000393!5.40e-09!60;CL:0000211!5.40e-09!60;CL:0002620!7.16e-09!23;CL:0000499!2.75e-08!27 | ||
|ontology_enrichment_celltype_v019=CL:0002334;3.58e-12;12!CL:0002620;1.09e-11;23!CL:0000499;2.08e-08;28!CL:0000188;7.36e-08;9!CL:0000062;1.35e-07;9!CL:0000057;2.86e-07;73!CL:0000327;5.97e-07;15!CL:0002570;9.90e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.22e-16,76;CL:0002334,3.66e-12,12;CL:0002620,7.25e-12,23;CL:0000680,1.06e-08,58;CL:0000056,1.06e-08,58;CL:0000355,1.06e-08,58;CL:0000499,1.77e-08,28;CL:0000188,7.20e-08,9;CL:0000187,1.70e-07,55;CL:0000048,3.01e-07,427;CL:0000327,4.75e-07,15;CL:0002570,9.36e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!8.71e-14!70;UBERON:0000486!1.20e-12!82;UBERON:0000914!1.46e-12!83;UBERON:0002329!1.46e-12!83;UBERON:0003077!1.46e-12!83;UBERON:0003059!1.46e-12!83;UBERON:0007282!1.46e-12!83;UBERON:0009618!1.46e-12!83;UBERON:0007285!1.46e-12!83;UBERON:0002385!6.03e-11!63;UBERON:0001015!6.03e-11!63;UBERON:0000383!6.03e-11!63;UBERON:0001134!1.43e-10!61;UBERON:0002036!1.43e-10!61;UBERON:0003082!1.43e-10!61;UBERON:0005256!1.67e-09!143;UBERON:0002100!6.47e-09!216;UBERON:0000475!1.36e-08!365;UBERON:0002199!1.95e-08!45;UBERON:0002416!1.95e-08!45;UBERON:0001013!3.21e-07!14;UBERON:0004923!8.18e-07!57 | |ontology_enrichment_uberon=UBERON:0004290!8.71e-14!70;UBERON:0000486!1.20e-12!82;UBERON:0000914!1.46e-12!83;UBERON:0002329!1.46e-12!83;UBERON:0003077!1.46e-12!83;UBERON:0003059!1.46e-12!83;UBERON:0007282!1.46e-12!83;UBERON:0009618!1.46e-12!83;UBERON:0007285!1.46e-12!83;UBERON:0002385!6.03e-11!63;UBERON:0001015!6.03e-11!63;UBERON:0000383!6.03e-11!63;UBERON:0001134!1.43e-10!61;UBERON:0002036!1.43e-10!61;UBERON:0003082!1.43e-10!61;UBERON:0005256!1.67e-09!143;UBERON:0002100!6.47e-09!216;UBERON:0000475!1.36e-08!365;UBERON:0002199!1.95e-08!45;UBERON:0002416!1.95e-08!45;UBERON:0001013!3.21e-07!14;UBERON:0004923!8.18e-07!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.70e-08;9!UBERON:0000042;2.70e-08;9!UBERON:0001013;1.15e-07;14!UBERON:0002097;2.84e-07;41!UBERON:0002199;4.94e-07;46!UBERON:0002416;4.94e-07;46!UBERON:0001134;6.35e-07;16!UBERON:0002036;6.35e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,1.76e-11,71;UBERON:0003059,1.76e-11,71;UBERON:0007282,1.76e-11,71;UBERON:0004290,1.76e-11,71;UBERON:0009618,1.76e-11,71;UBERON:0002199,2.40e-11,46;UBERON:0002416,2.40e-11,46;UBERON:0003077,4.03e-11,72;UBERON:0007285,4.03e-11,72;UBERON:0007524,9.00e-11,73;UBERON:0007503,1.24e-10,78;UBERON:0000486,7.75e-10,83;UBERON:0002097,2.66e-09,41;UBERON:0003104,2.79e-09,160;UBERON:0009142,2.79e-09,160;UBERON:0005256,1.86e-08,122;UBERON:0002385,5.03e-08,64;UBERON:0001015,5.03e-08,64;UBERON:0000383,5.03e-08,64;UBERON:0001134,6.41e-08,62;UBERON:0002036,6.41e-08,62;UBERON:0003082,6.41e-08,62;UBERON:0001013,1.14e-07,14;UBERON:0002100,1.27e-07,199 | |||
|phase1_expression=31.7937163723474,21.6241529129893,9.58489947852604,36.0263874071269,21.4541325325098,13.9574163856059,22.796989035148,5.05375898741465,0.783556884599516,0,0.697801167972428,0.436882744260345,0.527533956456907,5.94078494208224,21.2094320465866,0.672325146451775,1.80808358407193,1.46062018077475,1.95173119516203,3.81675280038043,2.04000691244253,2.82109249330279,2.0036519099174,1.09499540058307,4.2684497462233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,0.12786256184353,3.97583067623023,19.0508406041638,9.55987025141436,0.795285947051099,14.1124112387764,0.567208902984407,1.55210578223795,1.22968699970376,0.589405839739707,0,0,0,0,0,0,0,0,0,1.72046919021225,1.38856200643038,0,0.838998872419812,0.825354125820202,0.208994966536811,0.258416759169329,1.06729878806013,0.66944122552934,0,0,0.24406205754817,0,0.81014194788176,0.446498641420399,0.898117490504679,0,0,0,0.366403487860815,0,0,0,45.224447604274,2.02608818663328,0.662045904066094,1.14734648299525,1.06400514659507,10.0921968025615,5.33744978648525,2.4666754841716,0.622422070799533,0.67355336034844,1.47115712802113,5.90293967815232,4.03323147135999,0,7.49184184392769,2.85235910772225,15.5426627773873,1.17434498643765,1.45685649931318,1.82586048712923,0,0.368502951935304,0.103325781175765,0,1.23633464639278,4.55080680969013,3.59309070908119,0,0.375355559615893,0,0.877955241761676,0.30648779579902,7.96261712204963,0.226864366320042,26.011497174885,4.91181994282705,2.96704661623387,36.3110226262127,5.77094163735258,13.1396675423271,5.76962254627928,14.0084355760251,13.8360547328902,18.6800992940645,4.32634523618807,1.61646056818812,65.321765023057,15.2135668323737,16.1082562694963,0.193260853163297,0.272746120590835,0,0.853815942907168,0.795178609928912,1.2781333715647,2.28054321033815,1.26160425437814,1.82488679537915,17.2094485562798,18.0107462694008,17.9575397758225,6.50115099244771,4.33127689001751,0,0,0,0,0.217879444092406,0,0,0,0,0,2.80483547606892,2.4694440679884,2.94017422771084,0,0,0,0,0.122988438543114,0.343135620597051,0,0,0,0,0,0,0,1.73895607462615,7.74897381956423,0.433099343283221,0.925971025153221,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253991577168676,0.381988425558278,1.17217447210047,3.4214489204541,0,0.600686115687835,0.285826432630578,4.59737445815979,8.28324130783232,4.91366515000365,0.904902010304444,3.57656445851882,10.143633030672,8.51001973071586,26.0018592278415,10.0310875962235,4.25547396069835,23.9779961114489,0.142977993658148,0,0.823240336780769,6.18898750158097,0,0,0.904318131178758,0.871533458600294,0.499864955910285,0,0,0,17.0133647399024,22.9723871668228,14.2636905040718,29.5353865601862,6.36976599906189,1.61154866915906,0,0,0,0,0.254094624222463,1.30139853857622,0,1.67516265334349,0.637938751653163,0,0,0,3.0672872929785,19.5066503213274,6.23909554509392,1.45579603071565,0.178428988797162,0.157702415033935,2.10854546986884,27.9879872746779,6.82222512167955,9.31257641632544,25.2405727443466,20.8337160452125,3.0409265063829,5.286631251494,1.71571711905428,0,0,0,0,0,1.5119514666484,41.9302195213733,66.6024964070191,33.3985512375358,8.84160129864337,38.3780436800028,17.6939313257968,13.3576259800492,46.4171178345993,33.559166084181,30.961937817206,8.30807086693794,54.037825983881,1.32945394550784,0.601519410909855,0,2.41110341145674,15.2956581125642,14.1614368156178,1.80479845162965,1.07821471946181,3.92174884588428,0,0.105551628892876,0,0,0.431831832204279,0,5.96082162596476,7.5253466078228,0,1.66215201785745,0.223874754722178,0,0,0.256450125116389,0.328014645699706,0,0.309123034943167,2.28923662045859,3.71292749642646,0,0,0,9.37705967433583,11.8617435178276,11.0522645802813,7.71884805913371,10.3123435073543,11.3113021253098,8.77834262385839,8.36901135079331,0,0,0.255225424989168,0.10115778085555,0.464845549297286,7.870308670766,0.6970372701606,0.308033580176089,3.19383618190213,1.73986598415015,0.37064843820784,1.43124886741991,0.744316738719335,4.11293252134344,1.71567174531442,0.767693373934002,0,9.22789418985217,1.56989728039846,2.15846949099978,0.274537029736055,0.589062011728432,3.03273722359974,3.17020642346017,1.68503382495592,0.975267478179181,1.70599442741899,0,14.4689906092465,3.39373036688911,2.26016233240486,1.65409603063837,0.66343897524122,8.76901770507525,2.31510213706675,0,1.21746226177622,1.54911749049875,2.25356482025793,0,0.196498082026242,0.35667105148125,8.15950447362375,7.38876723541824,8.56166721695745,0.75894634753143,0,0,0.670302275535787,0,0.564862804660675,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.427296284509893,7.69983884210687,0,0,0,0,0,0,0,0,0,0,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0.485442086998054,0,0,0.23874448473769,1.18785872333055,0,0,0.281338832821026,0.111308705022906,0,0.211125408127993,42.83831747398,0.552567831062295,0.251932747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| ||
|short_description=p2@SCUBE3 | |short_description=p2@SCUBE3 | ||
}} | }} |
Latest revision as of 10:16, 18 September 2015
Short description: | p2@SCUBE3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SCUBE3_5end |
Coexpression cluster: | C519_Preadipocyte_Ewing_Myoblast_spindle_Fibroblast_Adipocyte_Osteoblast |
Association with transcript: | -374bp_to_ENST00000394681, NM_152753, uc003okf.1, uc003okg.1_5end |
EntrezGene: | SCUBE3 |
HGNC: | 13655 |
UniProt: | Q8IX30Q8NAV8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.22e-16 | 76 |
preadipocyte | 3.66e-12 | 12 |
skin fibroblast | 7.25e-12 | 23 |
muscle precursor cell | 1.06e-08 | 58 |
myoblast | 1.06e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.06e-08 | 58 |
stromal cell | 1.77e-08 | 28 |
cell of skeletal muscle | 7.20e-08 | 9 |
muscle cell | 1.70e-07 | 55 |
multi fate stem cell | 3.01e-07 | 427 |
extracellular matrix secreting cell | 4.75e-07 | 15 |
mesenchymal stem cell of adipose | 9.36e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
somite | 1.76e-11 | 71 |
presomitic mesoderm | 1.76e-11 | 71 |
presumptive segmental plate | 1.76e-11 | 71 |
dermomyotome | 1.76e-11 | 71 |
trunk paraxial mesoderm | 1.76e-11 | 71 |
integument | 2.40e-11 | 46 |
integumental system | 2.40e-11 | 46 |
paraxial mesoderm | 4.03e-11 | 72 |
presumptive paraxial mesoderm | 4.03e-11 | 72 |
dense mesenchyme tissue | 9.00e-11 | 73 |
epithelial vesicle | 1.24e-10 | 78 |
multilaminar epithelium | 7.75e-10 | 83 |
skin of body | 2.66e-09 | 41 |
mesenchyme | 2.79e-09 | 160 |
entire embryonic mesenchyme | 2.79e-09 | 160 |
trunk mesenchyme | 1.86e-08 | 122 |
muscle tissue | 5.03e-08 | 64 |
musculature | 5.03e-08 | 64 |
musculature of body | 5.03e-08 | 64 |
skeletal muscle tissue | 6.41e-08 | 62 |
striated muscle tissue | 6.41e-08 | 62 |
myotome | 6.41e-08 | 62 |
adipose tissue | 1.14e-07 | 14 |
trunk | 1.27e-07 | 199 |