FFCP PHASE1:Hg19::chr12:49524087..49524122,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10376 | |EntrezGene=10376 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18809 | |HGNC=18809 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=34bp_to_uc001rtk.2_5end | |association_with_transcript=34bp_to_uc001rtk.2_5end | ||
|cluster_id=chr12:49524087..49524122,- | |||
|coexpression_cluster_id=C19 | |coexpression_cluster_id=C19 | ||
|description=CAGE_peak_5_at_TUBA1B_5end | |description=CAGE_peak_5_at_TUBA1B_5end | ||
|id=chr12:49524087..49524122,- | |id=chr12:49524087..49524122,- | ||
|ontology_enrichment_celltype=CL:0002076!1.14e-10!43;CL:0000066!6.47e-10!254;CL:0000223!6.48e-10!59;CL:0000220!3.71e-09!246;CL:0002321!3.90e-09!248 | |ontology_enrichment_celltype=CL:0002076!1.14e-10!43;CL:0000066!6.47e-10!254;CL:0000223!6.48e-10!59;CL:0000220!3.71e-09!246;CL:0002321!3.90e-09!248 | ||
|ontology_enrichment_celltype_v019=CL:0002076;9.69e-09;42!CL:0002202;6.86e-07;9!CL:0002632;6.86e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.12e-12,42;CL:0000223,3.27e-11,58;CL:0000066,1.57e-09,253;CL:0002321,2.31e-09,250;CL:0002202,2.76e-07,9;CL:0002632,2.76e-07,9;CL:0002368,8.90e-07,13 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!2.44e-16!239;DOID:162!2.35e-14!235;DOID:0050687!1.22e-13!143;DOID:305!1.28e-10!106 | |ontology_enrichment_disease=DOID:14566!2.44e-16!239;DOID:162!2.35e-14!235;DOID:0050687!1.22e-13!143;DOID:305!1.28e-10!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.01e-09,143;DOID:305,2.67e-09,106;DOID:14566,6.00e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0000475!4.37e-11!365;UBERON:0000481!1.27e-09!347;UBERON:0003104!9.65e-08!238;UBERON:0009142!9.65e-08!238;UBERON:0002100!3.69e-07!216 | |ontology_enrichment_uberon=UBERON:0000475!4.37e-11!365;UBERON:0000481!1.27e-09!347;UBERON:0003104!9.65e-08!238;UBERON:0009142!9.65e-08!238;UBERON:0002100!3.69e-07!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0000072;1.77e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0008947,3.05e-08,38;UBERON:0003258,3.05e-08,38;UBERON:0011216,1.14e-07,223;UBERON:0000072,2.79e-07,47;UBERON:0002100,4.75e-07,199;UBERON:0004921,8.58e-07,118;UBERON:0005153,8.69e-07,37;UBERON:0000065,9.75e-07,54 | |||
|phase1_expression=0.908391896352783,1.07050261945492,0.422863212287913,0,0.893922188854576,0,0,1.89515962028049,1.30592814099919,0.737201809504527,1.39560233594486,0.218441372130172,0,0.247532705920093,0.994192127183747,0.672325146451775,0.602694528023977,0,0,0.246242116153576,0,0,0.286235987131057,0.410623275218653,0,0.382067028739756,0.328402357799783,0.550975469195755,0,0,0,1.83884244895785,2.10844143144775,2.9580320813343,0.0774672005803016,0.568676929949686,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0.579606171470105,0,0,0,0.113309342697566,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0.201606743224732,0.267440195783507,0,0,0,0.639312809217652,1.80719576192283,0.50133791063589,0.869079113764942,0,0.486634870302636,0.189069634328136,0.221729397462564,0.087834785693126,0.589405839739707,1.09288586487763,0.370784442784429,0,0,0,0,0,0,0,0.860234595106124,0.347140501607594,0,0,0.550236083880135,0.417989933073621,0,0,0,0,0,0,0.735326160691737,0,0.17859945656816,0,0.112611480483322,0,0,0,0,0,2.18047026071267,0.993943903390637,1.01304409331664,0.529636723252875,0,0.709336764396714,1.68203280042692,1.06748995729705,0.74000264525148,0.311211035399766,0.134710672069688,0.326923806226917,0.454072282934794,0.576175924479999,1.64025002283658,2.18512053781224,1.71141546463335,1.34503812496621,0.23486899728753,0.323745888736263,0,0.204154171254893,0.122834317311768,0.826606249406124,0,0.494533858557114,0,0.718618141816238,0.505008341862199,0.250237039743928,0.831192346452549,0,0.30648779579902,0.150238058906597,0.340296549480063,0,0,0.423863802319124,0,0.309157587715317,0,0.37223371266318,0.168776332241266,0.292311015483596,0.252433774244115,0.0920498986422993,0.161646056818812,0.355009592516614,0.302256294682921,0.67824236924195,0.57978255948989,0,0.860413786167011,0.365921118388786,0.265059536642971,0,0.10366105501537,0.252320850875628,0.36497735907583,0,0,0,0,1.44375896333917,1.18306800039844,1.85443159085912,1.92808823906786,1.54411561825352,1.52515610864684,1.66089433377768,1.61797569792197,1.96221465125346,0.769494313892781,0,1.40241773803446,0,0,1.26755034821831,0,0,0.441463099414651,0.491953754172454,1.02940686179115,3.73150970389327,4.49607013030478,0.904760751704678,0.462942225792648,4.23550796903422,0,0,0.115930404975077,0.117408694235822,0.433099343283221,0,0,0.790204397959275,0,0,0,0,0,0.335964256397719,1.27597587518148,4.83616022595381,2.3250715081117,0.766765358330422,0.492663237895943,0,0.621984346622316,0.144119953416961,0,0.126995788584338,1.14596527667483,0,0,0,0,0,0.224262168690721,0,0.1466765716419,1.03417372606222,3.57656445851882,0,0.26593811658487,1.04007436911366,0.771622122786426,2.83698264046557,0.532844358032199,0.714889968290738,1.08524321078289,0,0.325736184293735,0.355391948742546,0.791951872933429,0.602878754119172,0.871533458600294,1.59956785891291,0,0,0,0.718874566474748,0,0,4.1986578933598,1.02738161275192,0.537182889719687,0.112085143993527,0,0,0.256686072559497,2.03275699377971,0,0,0.335032530668698,0,0,0,0,0.12269149171914,0,0.542530047399471,0.207970861530807,1.07057393278297,0.630809660135739,0.234282829985426,0.300946099727719,0,2.0694614258501,0,0.368738337083406,0.868836144680828,0.195801157462741,0,0.206768026122887,0,0.106727557803444,0.606255142892519,0,0.604780586659361,1.48864684691266,0,1.12264037773229,1.66580894032411,1.02341449813341,1.60853921143608,0,1.23367755042124,1.59805552781814,2.05317890034523,0.519254429183621,0.813472649219715,1.81289174387433,1.20303882181971,4.8802924136025,2.06666006696292,1.63882051206045,0.917870904715969,0,0.15403067420883,0.784349769176855,0,0.105551628892876,0,0,0.431831832204279,0,0.270946437543853,0.501689773854853,0.254876273045038,0,0.671624264166535,0,0,0,0,3.25378394664303,0,0.183138929636687,0.082509499920588,2.29706215198469,3.90036147621913,0,2.90012154876366,0.154048617114644,0.460511024178389,0.137836572484531,0.107420244868274,0.145016693914229,0.681813019328807,0.979352392114111,1.98341898433174,0.768760269460425,0.255225424989168,1.2138933702666,2.32422774648643,0.31481234683064,0,0.308033580176089,3.19383618190213,1.73986598415015,4.26245703939016,0.858749320451947,0.372158369359667,0,0.190630193923825,1.27948895655667,0.42793898803392,0.318203247925937,1.56989728039846,0.179872457583315,0.54907405947211,1.06031162111118,4.24583211303964,6.34041284692033,1.68503382495592,1.46290121726877,0.974853958525138,3.16950440270266,0.409499734223957,2.12108147930569,1.13008116620243,0.551365343546124,1.32687795048244,3.5076070820301,1.73632660280006,0,2.43492452355245,1.8589409885985,0,0.143411352204052,0.294747123039363,1.426684205925,0.354761064070598,0.633322905892992,0.658589785919804,0,0,2.79044126903985,3.35151137767894,3.26672954583968,0.0941438007767792,0.86101074534246,1.68471475667626,0.443430153536676,0,0,0,0,0,0,0,0,0,0.320472213382419,2.88743956579008,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| ||
|short_description=p5@TUBA1B | |short_description=p5@TUBA1B | ||
}} | }} |
Latest revision as of 15:43, 18 September 2015
Short description: | p5@TUBA1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TUBA1B_5end |
Coexpression cluster: | C19_embryonic_testis_cord_chronic_CD14_NK_mesothelioma |
Association with transcript: | 34bp_to_uc001rtk.2_5end |
EntrezGene: | TUBA1B |
HGNC: | 18809 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 3.12e-12 | 42 |
endodermal cell | 3.27e-11 | 58 |
epithelial cell | 1.57e-09 | 253 |
embryonic cell | 2.31e-09 | 250 |
epithelial cell of tracheobronchial tree | 2.76e-07 | 9 |
epithelial cell of lower respiratory tract | 2.76e-07 | 9 |
respiratory epithelial cell | 8.90e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
respiratory primordium | 3.05e-08 | 38 |
endoderm of foregut | 3.05e-08 | 38 |
organ system subdivision | 1.14e-07 | 223 |
segment of respiratory tract | 2.79e-07 | 47 |
trunk | 4.75e-07 | 199 |
subdivision of digestive tract | 8.58e-07 | 118 |
epithelial bud | 8.69e-07 | 37 |
respiratory tract | 9.75e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.01e-09 | 143 |
carcinoma | 2.67e-09 | 106 |
disease of cellular proliferation | 6.00e-08 | 239 |