FFCP PHASE1:Hg19::chr15:67418047..67418093,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr15:67418047..67418093,+ to FFCP PHASE1:Hg19::chr15:67418047..67418093,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4088 | |EntrezGene=4088 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6769 | |HGNC=6769 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z9Q2,P84022 | |UniProt=B7Z9Q2,P84022 | ||
|association_with_transcript=0bp_to_ENST00000540846,NM_001145102,uc010ujr.1_5end | |||
|cluster_id=chr15:67418047..67418093,+ | |||
|coexpression_cluster_id=C2343 | |||
|description=CAGE_peak_4_at_SMAD3_5end | |||
|id=chr15:67418047..67418093,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.88e-16!254;CL:0000222!2.45e-14!119;CL:0000220!1.19e-12!246;CL:0002321!4.02e-12!248;CL:0000192!5.69e-11!42;CL:0000514!5.69e-11!42;CL:0000359!1.38e-10!32;CL:0000076!3.08e-10!62;CL:0000187!5.81e-09!54;CL:0000680!6.30e-09!57;CL:0000056!6.30e-09!57;CL:0000355!6.30e-09!57;CL:0000548!4.26e-08!679;CL:0000004!4.26e-08!679;CL:0000255!4.26e-08!679;CL:0000183!4.58e-08!59;CL:0000077!4.83e-08!19;CL:0000012!6.06e-08!682 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.10e-12;32!CL:0000192;9.57e-10;43!CL:0000077;3.71e-09;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.38e-21,253;CL:0002321,8.43e-14,250;CL:0000359,5.88e-13,32;CL:0000222,6.08e-13,121;CL:0000192,1.81e-12,43;CL:0000514,1.81e-12,43;CL:0000076,1.34e-10,63;CL:0000077,2.96e-09,19;CL:0000187,3.96e-09,55;CL:0000680,9.78e-09,58;CL:0000056,9.78e-09,58;CL:0000355,9.78e-09,58;CL:0000393,2.83e-07,61;CL:0000211,2.83e-07,61 | |||
|ontology_enrichment_development_v019=CL:0000514;9.57e-10;43 | |||
|ontology_enrichment_disease=DOID:305!5.26e-09!106;DOID:1749!9.84e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.95e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.25e-14,106;DOID:0050687,1.44e-10,143;DOID:1749,4.59e-09,14;DOID:162,5.40e-08,235;DOID:14566,1.23e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0003104!5.32e-13!238;UBERON:0009142!5.32e-13!238;UBERON:0000481!7.67e-13!347;UBERON:0001637!9.42e-12!42;UBERON:0003509!9.42e-12!42;UBERON:0004572!9.42e-12!42;UBERON:0000477!2.98e-10!286;UBERON:0004573!3.25e-10!33;UBERON:0004571!3.25e-10!33;UBERON:0003914!4.11e-10!118;UBERON:0000486!7.09e-10!82;UBERON:0001981!8.82e-10!60;UBERON:0007500!8.82e-10!60;UBERON:0004537!8.82e-10!60;UBERON:0006965!8.82e-10!60;UBERON:0002049!1.05e-09!79;UBERON:0007798!1.05e-09!79;UBERON:0002100!1.37e-09!216;UBERON:0000055!1.68e-09!69;UBERON:0000914!3.83e-09!83;UBERON:0002329!3.83e-09!83;UBERON:0003077!3.83e-09!83;UBERON:0003059!3.83e-09!83;UBERON:0007282!3.83e-09!83;UBERON:0009618!3.83e-09!83;UBERON:0007285!3.83e-09!83;UBERON:0005256!4.91e-09!143;UBERON:0004872!5.50e-09!84;UBERON:0004119!9.82e-09!169;UBERON:0000925!9.82e-09!169;UBERON:0006595!9.82e-09!169;UBERON:0000119!1.04e-08!312;UBERON:0000490!1.21e-08!138;UBERON:0001134!1.35e-08!61;UBERON:0002036!1.35e-08!61;UBERON:0003082!1.35e-08!61;UBERON:0000483!1.82e-08!309;UBERON:0000475!2.29e-08!365;UBERON:0002385!2.39e-08!63;UBERON:0001015!2.39e-08!63;UBERON:0000383!2.39e-08!63;UBERON:0000072!8.03e-08!46;UBERON:0000467!8.87e-08!625;UBERON:0000065!1.13e-07!53;UBERON:0001007!1.16e-07!155;UBERON:0001555!1.16e-07!155;UBERON:0007026!1.16e-07!155;UBERON:0000480!1.30e-07!626;UBERON:0001004!1.70e-07!72;UBERON:0004290!1.96e-07!70;UBERON:0001048!2.55e-07!168;UBERON:0000926!3.59e-07!448;UBERON:0004120!3.59e-07!448;UBERON:0006603!3.59e-07!448;UBERON:0008947!7.63e-07!38;UBERON:0003258!7.63e-07!38;UBERON:0000468!9.16e-07!659;UBERON:0004535!9.97e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.08e-10;33!UBERON:0004571;1.08e-10;33!UBERON:0001637;4.87e-10;42!UBERON:0003509;4.87e-10;42!UBERON:0004572;4.87e-10;42!UBERON:0000072;4.39e-08;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,3.38e-14,42;UBERON:0003509,3.38e-14,42;UBERON:0004572,3.38e-14,42;UBERON:0004573,5.77e-12,33;UBERON:0004571,5.77e-12,33;UBERON:0002049,4.92e-10,78;UBERON:0007798,4.92e-10,78;UBERON:0007500,7.37e-10,59;UBERON:0001981,7.37e-10,59;UBERON:0004537,7.37e-10,59;UBERON:0006965,7.37e-10,59;UBERON:0000055,1.14e-09,68;UBERON:0003914,2.95e-09,117;UBERON:0004872,7.22e-09,83;UBERON:0008947,1.10e-08,38;UBERON:0003258,1.10e-08,38;UBERON:0000486,1.55e-08,83;UBERON:0000072,2.30e-08,47;UBERON:0001048,2.62e-08,160;UBERON:0002100,3.57e-08,199;UBERON:0001134,4.55e-08,62;UBERON:0002036,4.55e-08,62;UBERON:0003082,4.55e-08,62;UBERON:0004535,7.05e-08,109;UBERON:0004119,1.04e-07,160;UBERON:0000925,1.04e-07,160;UBERON:0006595,1.04e-07,160;UBERON:0002385,1.66e-07,64;UBERON:0001015,1.66e-07,64;UBERON:0000383,1.66e-07,64;UBERON:0001009,2.67e-07,112;UBERON:0001007,3.01e-07,145;UBERON:0001555,3.01e-07,145;UBERON:0007026,3.01e-07,145;UBERON:0000065,5.22e-07,54;UBERON:0001737,5.87e-07,9;UBERON:0000483,8.06e-07,306;UBERON:0000119,8.91e-07,309 | |||
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| ||
|short_description=p4@SMAD3 | |||
}} | }} |
Latest revision as of 17:15, 18 September 2015
Short description: | p4@SMAD3 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SMAD3_5end |
Coexpression cluster: | C2343_squamous_malignant_meningioma_embryonic_mesothelioma_bile_papillotubular |
Association with transcript: | 0bp_to_ENST00000540846, NM_001145102, uc010ujr.1_5end |
EntrezGene: | SMAD3 |
HGNC: | 6769 |
UniProt: | B7Z9Q2P84022 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.38e-21 | 253 |
embryonic cell | 8.43e-14 | 250 |
vascular associated smooth muscle cell | 5.88e-13 | 32 |
mesodermal cell | 6.08e-13 | 121 |
smooth muscle cell | 1.81e-12 | 43 |
smooth muscle myoblast | 1.81e-12 | 43 |
squamous epithelial cell | 1.34e-10 | 63 |
mesothelial cell | 2.96e-09 | 19 |
muscle cell | 3.96e-09 | 55 |
muscle precursor cell | 9.78e-09 | 58 |
myoblast | 9.78e-09 | 58 |
multi-potent skeletal muscle stem cell | 9.78e-09 | 58 |
electrically responsive cell | 2.83e-07 | 61 |
electrically active cell | 2.83e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.25e-14 | 106 |
cell type cancer | 1.44e-10 | 143 |
squamous cell carcinoma | 4.59e-09 | 14 |
cancer | 5.40e-08 | 235 |
disease of cellular proliferation | 1.23e-07 | 239 |