FFCP PHASE1:Hg19::chr7:55640141..55640161,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81552 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=34518 | |||
|TSSclassifier=strong | |||
|UniProt=C9JQ18,F8WDC2 | |||
|association_with_transcript=0bp_to_ENST00000452832,ENST00000453112_5end | |||
|cluster_id=chr7:55640141..55640161,- | |||
|description=CAGE_peak_2_at_VOPP1_5end | |||
|id=chr7:55640141..55640161,- | |||
|ontology_enrichment_celltype=CL:0000115!3.20e-13!35;CL:0002078!9.92e-11!44;CL:0002087!2.25e-10!119;CL:0000738!2.86e-10!140;CL:0002139!1.08e-09!24;CL:0000213!4.76e-08!57;CL:0000215!4.76e-08!57;CL:0000071!6.30e-08!18;CL:0002546!6.30e-08!18;CL:0002031!1.05e-07!124;CL:0000222!1.22e-07!119;CL:0002371!3.23e-07!591;CL:0000945!5.75e-07!24;CL:0000826!5.75e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000115;6.17e-12;36!CL:0002139;1.13e-09;24!CL:0000071;5.14e-08;18!CL:0002078;1.84e-07;45!CL:0000945;5.34e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,8.10e-14,36;CL:0002087,2.89e-11,115;CL:0002078,3.14e-11,45;CL:0000738,4.21e-11,136;CL:0002139,1.06e-09,24;CL:0000213,1.85e-08,58;CL:0000215,1.85e-08,58;CL:0002031,2.03e-08,120;CL:0000071,6.23e-08,18;CL:0002546,6.23e-08,18;CL:0000222,1.44e-07,121;CL:0000945,5.70e-07,24;CL:0000826,5.70e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002546;5.14e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!1.52e-14!69;UBERON:0003081!1.54e-14!216;UBERON:0004535!1.22e-12!110;UBERON:0001981!1.91e-12!60;UBERON:0007500!1.91e-12!60;UBERON:0004537!1.91e-12!60;UBERON:0006965!1.91e-12!60;UBERON:0002049!4.39e-12!79;UBERON:0007798!4.39e-12!79;UBERON:0001009!1.75e-11!113;UBERON:0004872!5.14e-10!84;UBERON:0001637!2.02e-09!42;UBERON:0003509!2.02e-09!42;UBERON:0004572!2.02e-09!42;UBERON:0002193!1.30e-08!112;UBERON:0001986!6.30e-08!18;UBERON:0004638!6.30e-08!18;UBERON:0004852!6.30e-08!18;UBERON:0003914!1.22e-07!118;UBERON:0004573!3.46e-07!33;UBERON:0004571!3.46e-07!33;UBERON:0000487!6.47e-07!22;UBERON:0002390!8.26e-07!102;UBERON:0003061!8.26e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;5.14e-08;18!UBERON:0001986;5.14e-08;18!UBERON:0004852;5.14e-08;18!UBERON:0000055;5.52e-08;65!UBERON:0007500;1.17e-07;56!UBERON:0001981;1.17e-07;56!UBERON:0004537;1.17e-07;56!UBERON:0001637;5.03e-07;42!UBERON:0003509;5.03e-07;42!UBERON:0004572;5.03e-07;42!UBERON:0000487;5.18e-07;22!UBERON:0003914;6.77e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,2.77e-15,203;UBERON:0000055,4.46e-14,68;UBERON:0000926,7.15e-13,315;UBERON:0004120,7.15e-13,315;UBERON:0006603,7.15e-13,315;UBERON:0004535,2.73e-12,109;UBERON:0007500,5.49e-12,59;UBERON:0001981,5.49e-12,59;UBERON:0004537,5.49e-12,59;UBERON:0006965,5.49e-12,59;UBERON:0002049,1.16e-11,78;UBERON:0007798,1.16e-11,78;UBERON:0001009,3.77e-11,112;UBERON:0004872,1.13e-09,83;UBERON:0002193,1.56e-09,108;UBERON:0001637,2.00e-09,42;UBERON:0003509,2.00e-09,42;UBERON:0004572,2.00e-09,42;UBERON:0003914,4.74e-08,117;UBERON:0004638,6.23e-08,18;UBERON:0001986,6.23e-08,18;UBERON:0004852,6.23e-08,18;UBERON:0002405,1.05e-07,93;UBERON:0002390,1.25e-07,98;UBERON:0003061,1.25e-07,98;UBERON:0004573,3.43e-07,33;UBERON:0004571,3.43e-07,33;UBERON:0000487,6.41e-07,22 | |||
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| |||
|short_description=p2@VOPP1 | |||
}} |
Latest revision as of 01:49, 19 September 2015
Short description: | p2@VOPP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VOPP1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000452832, ENST00000453112_5end |
EntrezGene: | VOPP1 |
HGNC: | 34518 |
UniProt: | C9JQ18F8WDC2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 8.10e-14 | 36 |
nongranular leukocyte | 2.89e-11 | 115 |
meso-epithelial cell | 3.14e-11 | 45 |
leukocyte | 4.21e-11 | 136 |
endothelial cell of vascular tree | 1.06e-09 | 24 |
lining cell | 1.85e-08 | 58 |
barrier cell | 1.85e-08 | 58 |
hematopoietic lineage restricted progenitor cell | 2.03e-08 | 120 |
blood vessel endothelial cell | 6.23e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.23e-08 | 18 |
mesodermal cell | 1.44e-07 | 121 |
lymphocyte of B lineage | 5.70e-07 | 24 |
pro-B cell | 5.70e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 2.77e-15 | 203 |
vessel | 4.46e-14 | 68 |
mesoderm | 7.15e-13 | 315 |
mesoderm-derived structure | 7.15e-13 | 315 |
presumptive mesoderm | 7.15e-13 | 315 |
cardiovascular system | 2.73e-12 | 109 |
epithelial tube open at both ends | 5.49e-12 | 59 |
blood vessel | 5.49e-12 | 59 |
blood vasculature | 5.49e-12 | 59 |
vascular cord | 5.49e-12 | 59 |
vasculature | 1.16e-11 | 78 |
vascular system | 1.16e-11 | 78 |
circulatory system | 3.77e-11 | 112 |
splanchnic layer of lateral plate mesoderm | 1.13e-09 | 83 |
hemolymphoid system | 1.56e-09 | 108 |
artery | 2.00e-09 | 42 |
arterial blood vessel | 2.00e-09 | 42 |
arterial system | 2.00e-09 | 42 |
epithelial tube | 4.74e-08 | 117 |
blood vessel endothelium | 6.23e-08 | 18 |
endothelium | 6.23e-08 | 18 |
cardiovascular system endothelium | 6.23e-08 | 18 |
immune system | 1.05e-07 | 93 |
hematopoietic system | 1.25e-07 | 98 |
blood island | 1.25e-07 | 98 |
systemic artery | 3.43e-07 | 33 |
systemic arterial system | 3.43e-07 | 33 |
simple squamous epithelium | 6.41e-07 | 22 |