FFCP PHASE1:Hg19::chr11:6411636..6411656,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:6411636..6411656,+ to FFCP PHASE1:Hg19::chr11:6411636..6411656,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6609 | |EntrezGene=6609 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11120 | |HGNC=11120 | ||
|TSSclassifier=strong | |||
|UniProt=G3XAB5,E7EWE2,P17405,Q59EN6,E9PKS3 | |UniProt=G3XAB5,E7EWE2,P17405,Q59EN6,E9PKS3 | ||
|association_with_transcript=0bp_to_ENST00000299397,ENST00000356761,NM_000543,NM_001007593,uc001mcv.1,uc001mcw.2,uc001mcx.2,uc009yew.2,uc009yex.2_5end | |||
|cluster_id=chr11:6411636..6411656,+ | |||
|description=CAGE_peak_2_at_SMPD1_5end | |||
|id=chr11:6411636..6411656,+ | |||
|ontology_enrichment_celltype=CL:0000055!6.22e-13!180;CL:0000192!3.78e-10!42;CL:0000514!3.78e-10!42;CL:0000359!2.91e-09!32;CL:0000680!9.48e-08!57;CL:0000056!9.48e-08!57;CL:0000355!9.48e-08!57;CL:0000183!1.45e-07!59;CL:0000057!2.01e-07!75;CL:0000187!6.95e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.94e-09;32!CL:0000192;1.88e-08;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,7.53e-11,43;CL:0000514,7.53e-11,43;CL:0000359,7.99e-10,32;CL:0000057,8.87e-08,76;CL:0000680,1.06e-07,58;CL:0000056,1.06e-07,58;CL:0000355,1.06e-07,58;CL:0000187,8.39e-07,55 | |||
|ontology_enrichment_development_v019=CL:0000514;1.88e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!9.38e-14!57;UBERON:0005068!9.38e-14!57;UBERON:0006241!9.38e-14!57;UBERON:0007135!9.38e-14!57;UBERON:0002616!2.41e-13!59;UBERON:0000955!1.29e-12!69;UBERON:0006238!1.29e-12!69;UBERON:0001017!5.51e-12!82;UBERON:0005743!6.56e-11!86;UBERON:0000073!3.24e-10!94;UBERON:0001016!3.24e-10!94;UBERON:0002346!4.63e-10!90;UBERON:0001637!5.96e-10!42;UBERON:0003509!5.96e-10!42;UBERON:0004572!5.96e-10!42;UBERON:0003075!2.47e-09!86;UBERON:0007284!2.47e-09!86;UBERON:0002780!3.09e-09!41;UBERON:0001890!3.09e-09!41;UBERON:0006240!3.09e-09!41;UBERON:0000477!4.66e-09!286;UBERON:0000914!6.71e-09!83;UBERON:0002329!6.71e-09!83;UBERON:0003077!6.71e-09!83;UBERON:0003059!6.71e-09!83;UBERON:0007282!6.71e-09!83;UBERON:0009618!6.71e-09!83;UBERON:0007285!6.71e-09!83;UBERON:0004573!1.09e-08!33;UBERON:0004571!1.09e-08!33;UBERON:0003080!1.83e-08!42;UBERON:0002385!2.62e-08!63;UBERON:0001015!2.62e-08!63;UBERON:0000383!2.62e-08!63;UBERON:0001134!3.08e-08!61;UBERON:0002036!3.08e-08!61;UBERON:0003082!3.08e-08!61;UBERON:0001893!4.19e-08!34;UBERON:0000033!4.78e-08!123;UBERON:0007023!5.62e-08!115;UBERON:0002020!6.02e-08!34;UBERON:0003528!6.02e-08!34;UBERON:0000153!6.52e-08!129;UBERON:0007811!6.52e-08!129;UBERON:0002791!1.19e-07!33;UBERON:0004290!1.63e-07!70;UBERON:0002204!1.77e-07!167;UBERON:0000025!1.91e-07!194;UBERON:0003076!4.02e-07!15;UBERON:0003057!4.02e-07!15;UBERON:0001869!4.39e-07!32;UBERON:0000924!6.20e-07!173;UBERON:0006601!6.20e-07!173;UBERON:0000475!7.79e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;4.67e-08;53!UBERON:0002616;4.67e-08;53!UBERON:0004573;6.37e-08;33!UBERON:0004571;6.37e-08;33!UBERON:0001637;1.20e-07;42!UBERON:0003509;1.20e-07;42!UBERON:0004572;1.20e-07;42!UBERON:0001017;4.48e-07;75!UBERON:0002780;5.63e-07;41!UBERON:0001890;5.63e-07;41!UBERON:0001893;6.16e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,7.99e-15,56;UBERON:0005068,7.99e-15,56;UBERON:0006241,7.99e-15,56;UBERON:0007135,7.99e-15,56;UBERON:0000955,1.50e-13,68;UBERON:0006238,1.50e-13,68;UBERON:0000073,1.80e-13,53;UBERON:0002616,1.80e-13,53;UBERON:0001017,4.63e-13,81;UBERON:0001016,3.45e-12,89;UBERON:0002346,6.29e-12,86;UBERON:0003075,2.48e-11,82;UBERON:0007284,2.48e-11,82;UBERON:0001637,3.91e-10,42;UBERON:0003509,3.91e-10,42;UBERON:0004572,3.91e-10,42;UBERON:0002780,4.17e-09,41;UBERON:0001890,4.17e-09,41;UBERON:0003080,4.17e-09,41;UBERON:0006240,4.17e-09,41;UBERON:0004573,9.11e-09,33;UBERON:0004571,9.11e-09,33;UBERON:0002385,2.64e-08,64;UBERON:0001015,2.64e-08,64;UBERON:0000383,2.64e-08,64;UBERON:0001134,3.18e-08,62;UBERON:0002036,3.18e-08,62;UBERON:0003082,3.18e-08,62;UBERON:0002204,3.55e-08,167;UBERON:0010314,4.03e-08,132;UBERON:0007524,5.02e-08,73;UBERON:0001893,6.87e-08,34;UBERON:0004121,7.92e-08,171;UBERON:0000924,7.92e-08,171;UBERON:0006601,7.92e-08,171;UBERON:0003528,9.95e-08,34;UBERON:0002020,9.95e-08,34;UBERON:0003077,1.27e-07,72;UBERON:0007285,1.27e-07,72;UBERON:0003076,1.57e-07,15;UBERON:0003057,1.57e-07,15;UBERON:0000025,1.61e-07,192;UBERON:0002329,2.79e-07,71;UBERON:0003059,2.79e-07,71;UBERON:0007282,2.79e-07,71;UBERON:0004290,2.79e-07,71;UBERON:0009618,2.79e-07,71;UBERON:0010371,4.52e-07,104;UBERON:0007503,4.78e-07,78;UBERON:0002791,6.98e-07,32;UBERON:0001869,7.83e-07,32;UBERON:0004732,8.72e-07,13;UBERON:0007023,9.62e-07,114 | |||
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| ||
|short_description=p2@SMPD1 | |||
}} | }} |
Latest revision as of 03:13, 19 September 2015
Short description: | p2@SMPD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SMPD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000299397, ENST00000356761, NM_000543, NM_001007593, uc001mcv.1, uc001mcw.2, uc001mcx.2, uc009yew.2, uc009yex.2_5end |
EntrezGene: | SMPD1 |
HGNC: | 11120 |
UniProt: | G3XAB5E7EWE2P17405Q59EN6E9PKS3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 7.53e-11 | 43 |
smooth muscle myoblast | 7.53e-11 | 43 |
vascular associated smooth muscle cell | 7.99e-10 | 32 |
fibroblast | 8.87e-08 | 76 |
muscle precursor cell | 1.06e-07 | 58 |
myoblast | 1.06e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.06e-07 | 58 |
muscle cell | 8.39e-07 | 55 |