FFCP PHASE1:Hg19::chr4:89080436..89080448,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9429 | |EntrezGene=9429 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=74 | |HGNC=74 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=10bp_to_uc003hrk.1_5end | |association_with_transcript=10bp_to_uc003hrk.1_5end | ||
|cluster_id=chr4:89080436..89080448,- | |||
|coexpression_cluster_id=C3849 | |||
|description=CAGE_peak_12_at_ABCG2_5end | |description=CAGE_peak_12_at_ABCG2_5end | ||
|id=chr4:89080436..89080448,- | |id=chr4:89080436..89080448,- | ||
|ontology_enrichment_celltype=CL:0000039!4.78e-17!7;CL:0000586!4.78e-17!7;CL:0002322!2.87e-11!5;CL:0000066!1.18e-09!254 | |ontology_enrichment_celltype=CL:0000039!4.78e-17!7;CL:0000586!4.78e-17!7;CL:0002322!2.87e-11!5;CL:0000066!1.18e-09!254 | ||
|ontology_enrichment_celltype_v019=CL:0000039;1.03e-32;7!CL:0000586;1.03e-32;7!CL:0000319;4.06e-26;1!CL:0000159;8.82e-14;2!CL:0000307;1.60e-09;3!CL:0000083;1.86e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.09e-32,7;CL:0000586,1.09e-32,7;CL:0000319,3.58e-26,1;CL:0000159,8.28e-14,2;CL:0000068,1.67e-09,3;CL:0000069,1.67e-09,3;CL:0000307,1.67e-09,3;CL:0000377,1.67e-09,3;CL:0000083,2.04e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0003124;8.64e-26;1!CL:0000377;1.60e-09;3 | |||
|ontology_enrichment_disease=DOID:305!8.98e-16!106;DOID:0050687!9.92e-16!143;DOID:162!3.09e-08!235;DOID:14566!7.75e-08!239 | |ontology_enrichment_disease=DOID:305!8.98e-16!106;DOID:0050687!9.92e-16!143;DOID:162!3.09e-08!235;DOID:14566!7.75e-08!239 | ||
|ontology_enrichment_disease_v019=DOID:3030;4.06e-26;1!DOID:1799;8.64e-26;1!DOID:10165;8.64e-26;1!DOID:1798;8.64e-26;1!DOID:3095;6.15e-11;22!DOID:2994;6.15e-11;22!DOID:1793;1.86e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,3.58e-26,1;DOID:1799,1.26e-25,1;DOID:10165,1.26e-25,1;DOID:1798,1.26e-25,1;DOID:3095,6.26e-11,22;DOID:2994,6.26e-11,22;DOID:1793,2.04e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0001737!8.96e-12!9;UBERON:0000473!2.22e-10!8;UBERON:0003135!5.90e-10!11;UBERON:0003101!1.45e-08!22;UBERON:0000079!1.45e-08!22 | |ontology_enrichment_uberon=UBERON:0001737!8.96e-12!9;UBERON:0000473!2.22e-10!8;UBERON:0003135!5.90e-10!11;UBERON:0003101!1.45e-08!22;UBERON:0000079!1.45e-08!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0001000;8.64e-26;1!UBERON:0005352;8.64e-26;1!UBERON:0003135;5.17e-10;11!UBERON:0006947;1.60e-09;3!UBERON:0004054;1.60e-09;3!UBERON:0001987;1.86e-07;4!UBERON:0005904;1.86e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001000,5.93e-26,1;UBERON:0005352,5.93e-26,1;UBERON:0003135,4.83e-10,11;UBERON:0006947,1.41e-09,3;UBERON:0004054,1.41e-09,3;UBERON:0005904,1.69e-07,4;UBERON:0001987,1.80e-07,4;UBERON:0004340,1.80e-07,4 | |||
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| ||
|short_description=p12@ABCG2 | |short_description=p12@ABCG2 | ||
}} | }} |
Latest revision as of 07:13, 19 September 2015
Short description: | p12@ABCG2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_ABCG2_5end |
Coexpression cluster: | C3849_choriocarcinoma_testicular_H9_iPS_pancreatic_mucinous_HES3GFP |
Association with transcript: | 10bp_to_uc003hrk.1_5end |
EntrezGene: | ABCG2 |
HGNC: | 74 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.09e-32 | 7 |
germ cell | 1.09e-32 | 7 |
mucus secreting cell | 3.58e-26 | 1 |
seromucus secreting cell | 8.28e-14 | 2 |
duct epithelial cell | 1.67e-09 | 3 |
branched duct epithelial cell | 1.67e-09 | 3 |
tracheal epithelial cell | 1.67e-09 | 3 |
tracheoblast | 1.67e-09 | 3 |
epithelial cell of pancreas | 2.04e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
vas deferens | 5.93e-26 | 1 |
spermatic cord | 5.93e-26 | 1 |
male reproductive organ | 4.83e-10 | 11 |
male genital duct | 1.41e-09 | 3 |
internal male genitalia | 1.41e-09 | 3 |
duct of male reproductive system | 1.69e-07 | 4 |
placenta | 1.80e-07 | 4 |
allantois | 1.80e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 3.58e-26 | 1 |
islet cell tumor | 1.26e-25 | 1 |
endocrine pancreas cancer | 1.26e-25 | 1 |
pancreatic endocrine carcinoma | 1.26e-25 | 1 |
germ cell and embryonal cancer | 6.26e-11 | 22 |
germ cell cancer | 6.26e-11 | 22 |
pancreatic cancer | 2.04e-07 | 4 |