FFCP PHASE1:Hg19::chr12:56351171..56351183,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6490 | |EntrezGene=6490 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10880 | |HGNC=10880 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-45bp_to_ENST00000549564_5end | |association_with_transcript=-45bp_to_ENST00000549564_5end | ||
|cluster_id=chr12:56351171..56351183,- | |||
|coexpression_cluster_id=C88 | |coexpression_cluster_id=C88 | ||
|description=CAGE_peak_8_at_PMEL_5end | |description=CAGE_peak_8_at_PMEL_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000147!1.46e-75!14;CL:0000148!5.12e-74!10;CL:0000541!5.12e-74!10;CL:0002322!2.24e-36!5;CL:0000710!3.03e-36!20;CL:0000075!1.96e-26!27;CL:0000325!8.60e-26!39;CL:0002567!7.29e-24!3;CL:0002077!2.48e-21!33;CL:0000149!7.89e-18!4;CL:0000333!5.48e-16!41;CL:0000133!1.29e-15!59;CL:0000221!1.08e-12!71;CL:0002586!4.66e-11!3;CL:0002566!5.70e-09!1;CL:0002598!1.05e-08!1 | |ontology_enrichment_celltype=CL:0000147!1.46e-75!14;CL:0000148!5.12e-74!10;CL:0000541!5.12e-74!10;CL:0002322!2.24e-36!5;CL:0000710!3.03e-36!20;CL:0000075!1.96e-26!27;CL:0000325!8.60e-26!39;CL:0002567!7.29e-24!3;CL:0002077!2.48e-21!33;CL:0000149!7.89e-18!4;CL:0000333!5.48e-16!41;CL:0000133!1.29e-15!59;CL:0000221!1.08e-12!71;CL:0002586!4.66e-11!3;CL:0002566!5.70e-09!1;CL:0002598!1.05e-08!1 | ||
|ontology_enrichment_celltype_v019=CL:0000148;2.99e-96;10!CL:0000147;1.90e-89;14!CL:0002567;6.68e-60;3!CL:0000710;3.37e-48;20!CL:0000075;1.03e-35;27!CL:0002077;5.25e-25;34!CL:0002566;7.72e-21;1!CL:0000149;9.46e-21;4!CL:0002586;8.29e-08;3 | |ontology_enrichment_celltype_v019=CL:0000148;2.99e-96;10!CL:0000147;1.90e-89;14!CL:0002567;6.68e-60;3!CL:0000710;3.37e-48;20!CL:0000075;1.03e-35;27!CL:0002077;5.25e-25;34!CL:0002566;7.72e-21;1!CL:0000149;9.46e-21;4!CL:0002586;8.29e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000148,2.99e-96,10;CL:0000541,2.99e-96,10;CL:0000147,1.90e-89,14;CL:0002567,6.68e-60,3;CL:0000710,3.37e-48,20;CL:0000075,1.03e-35,27;CL:0002077,2.34e-28,34;CL:0000333,2.08e-22,41;CL:0002566,7.72e-21,1;CL:0000149,9.46e-21,4;CL:0000133,9.37e-16,59;CL:0000221,5.95e-13,72;CL:0002586,8.29e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000133;1.08e-08;59!CL:0000221;2.50e-07;72 | |ontology_enrichment_development_v019=CL:0000133;1.08e-08;59!CL:0000221;2.50e-07;72 | ||
|ontology_enrichment_disease=DOID:1909!1.87e-16!2 | |ontology_enrichment_disease=DOID:1909!1.87e-16!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;2.01e-40;2 | |ontology_enrichment_disease_v019=DOID:1909;2.01e-40;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,2.01e-40,2 | |||
|ontology_enrichment_uberon=UBERON:0000966!6.24e-14!5;UBERON:0005388!6.24e-14!5;UBERON:0001802!6.24e-14!5;UBERON:0001781!4.66e-11!3;UBERON:0001782!4.66e-11!3;UBERON:0005424!4.66e-11!3 | |ontology_enrichment_uberon=UBERON:0000966!6.24e-14!5;UBERON:0005388!6.24e-14!5;UBERON:0001802!6.24e-14!5;UBERON:0001781!4.66e-11!3;UBERON:0001782!4.66e-11!3;UBERON:0005424!4.66e-11!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0001781;8.29e-08;3!UBERON:0001782;8.29e-08;3 | |ontology_enrichment_uberon_v019=UBERON:0001781;8.29e-08;3!UBERON:0001782;8.29e-08;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,8.29e-08,3;UBERON:0005424,8.29e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.397589304964456,0.116193942869518,0.725627385107593,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,3.55588208036147,8.40374536228211,45.7148044119183,6.84289784090821,10.2827492703324,20.4233279333864,14.8629744967901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769350375349168,0,2.60302715731442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269272933229316,0.217294743844016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0.412618309791701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.09452617362449,16.8424546791531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.397589304964456,0.116193942869518,0.725627385107593,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,3.55588208036147,8.40374536228211,45.7148044119183,6.84289784090821,10.2827492703324,20.4233279333864,14.8629744967901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769350375349168,0,2.60302715731442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269272933229316,0.217294743844016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0.412618309791701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.09452617362449,16.8424546791531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p8@PMEL | |short_description=p8@PMEL | ||
}} | }} |
Latest revision as of 09:08, 19 September 2015
Short description: | p8@PMEL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_PMEL_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | -45bp_to_ENST00000549564_5end |
EntrezGene: | PMEL |
HGNC: | 10880 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 2.99e-96 | 10 |
melanoblast | 2.99e-96 | 10 |
pigment cell | 1.90e-89 | 14 |
light melanocyte | 6.68e-60 | 3 |
neurecto-epithelial cell | 3.37e-48 | 20 |
columnar/cuboidal epithelial cell | 1.03e-35 | 27 |
ecto-epithelial cell | 2.34e-28 | 34 |
migratory neural crest cell | 2.08e-22 | 41 |
dark melanocyte | 7.72e-21 | 1 |
visual pigment cell | 9.46e-21 | 4 |
neurectodermal cell | 9.37e-16 | 59 |
ectodermal cell | 5.95e-13 | 72 |
retinal pigment epithelial cell | 8.29e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 8.29e-08 | 3 |
presumptive retinal pigmented epithelium | 8.29e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.01e-40 | 2 |